View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13063_low_1 (Length: 363)
Name: NF13063_low_1
Description: NF13063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13063_low_1 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 363
Target Start/End: Original strand, 38285034 - 38285396
Alignment:
| Q |
1 |
aattctcgttgtcgtttactcttcttccttcatctacattgcaagtaaacgacaacaatatgggaaacgctaacggaagagaagacggagctattcccga |
100 |
Q |
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| T |
38285034 |
aattctcgttgtcgtttactcttcttccttcatctacattgcaagtaaacgacaacaatatgggaaacgctaacggaagagaagacggagctattcccga |
38285133 |
T |
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| Q |
101 |
cgccggcgatccttccggtcgtgaacctcacgcgccacctcctattcgtgctttttcttccgattcaatggcaaatagtccgcctcaaagtcctcgtcgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38285134 |
cgccggcgatccttccggtcgtgaacctcacgcgccacctcctattcgtgctttttcttccgattcaatggcaaatagtccgcctcaaagtcctcgtcgt |
38285233 |
T |
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| Q |
201 |
tccagatcgccgatcctcttcggtcctcaggttcgctttctatttcgttctttcattttacgcttttctgaattttttgttatacaataatgttagttgt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38285234 |
tccagatcgccgatcctcttcggtcctcaggttcgctttctatttcgttctttcattttacgcttttctgaattttttgttatacaataatgttagttgt |
38285333 |
T |
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| Q |
301 |
tattttcgttcgttaatcgttactgttgaattgaattttgattttgtgtgttcgttgatgatg |
363 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
38285334 |
tattttcgttcgttaatcgttactgttgaattgaatttcgattttgtgtgttcgttgatgatg |
38285396 |
T |
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