View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13063_low_2 (Length: 227)

Name: NF13063_low_2
Description: NF13063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13063_low_2
NF13063_low_2
[»] chr5 (9 HSPs)
chr5 (37-227)||(29999610-29999800)
chr5 (61-227)||(29990906-29991072)
chr5 (61-227)||(29963301-29963467)
chr5 (61-227)||(30011331-30011497)
chr5 (60-224)||(30006051-30006215)
chr5 (61-224)||(30044940-30045103)
chr5 (61-224)||(29952199-29952362)
chr5 (82-222)||(30070791-30070931)
chr5 (61-223)||(29944079-29944241)


Alignment Details
Target: chr5 (Bit Score: 167; Significance: 1e-89; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 37 - 227
Target Start/End: Complemental strand, 29999800 - 29999610
Alignment:
Q  37 tagtagtaataaagagtacaaatgtacctgaaggtcaaaaatgcctagccaaggaacataatccgccagattaaaagctcccatcaaagttaatccatct 136  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  29999800 tagtagtaataaatagtacaaatgtacctgaaggtcaaaaatgcctagccaaggaacataatcagccagattaaaagctcccatcaaagttaatccatct 29999701  T
Q  137 ttaatcatcttcttcaagtcaaattgctcatacttacccctacccaatatcatcttatgcacaatatcatcaataagattctctacaatct 227  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||| |||||||    
T  29999700 ttaatcatcttcttcaagtcaaattgctcatacttacctctacccaatatcatcttatacacaatatcctcaataagattctcgacaatct 29999610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 61 - 227
Target Start/End: Complemental strand, 29991072 - 29990906
Alignment:
Q  61 tacctgaaggtcaaaaatgcctagccaaggaacataatccgccagattaaaagctcccatcaaagttaatccatctttaatcatcttcttcaagtcaaat 160  Q
    |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||  ||||| |||| || || ||||||||| ||||||    
T  29991072 tacctgaaggtcaaaaattcctagccaaggaacataatcagccagattaaaagctccaatcaaagccaatccttcttgaaccaacttcttcaaatcaaat 29990973  T
Q  161 tgctcatacttacccctacccaatatcatcttatgcacaatatcatcaataagattctctacaatct 227  Q
    |||||||||||||| ||||||||||||||||||| ||||||||| ||||||| ||||||||||||||    
T  29990972 tgctcatacttacctctacccaatatcatcttatacacaatatcttcaataacattctctacaatct 29990906  T

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Target: chr5; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 61 - 227
Target Start/End: Complemental strand, 29963467 - 29963301
Alignment:
Q  61 tacctgaaggtcaaaaatgcctagccaaggaacataatccgccagattaaaagctcccatcaaagttaatccatctttaatcatcttcttcaagtcaaat 160  Q
    ||||||||| ||||||   |||| ||||| ||||||||| ||||||||||||||||| | || ||  | ||| |||| || || |||||| || ||||||    
T  29963467 tacctgaagatcaaaaggacctaaccaagaaacataatcagccagattaaaagctccaagcatagccattccttcttgaaccaacttctttaaatcaaat 29963368  T
Q  161 tgctcatacttacccctacccaatatcatcttatgcacaatatcatcaataagattctctacaatct 227  Q
    |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  29963367 tgctcatacttacccctacccaatatcatcttatacacaatatcttcaataagattctctacaatct 29963301  T

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Target: chr5; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 61 - 227
Target Start/End: Original strand, 30011331 - 30011497
Alignment:
Q  61 tacctgaaggtcaaaaatgcctagccaaggaacataatccgccagattaaaagctcccatcaaagttaatccatctttaatcatcttcttcaagtcaaat 160  Q
    ||||||||| ||||||   |||| ||||| ||||||||| ||||||||||||||||| | || ||  | ||| |||| || || |||||| || ||||||    
T  30011331 tacctgaagatcaaaaggacctaaccaagaaacataatcagccagattaaaagctccaagcatagccattccttcttgaaccaacttctttaaatcaaat 30011430  T
Q  161 tgctcatacttacccctacccaatatcatcttatgcacaatatcatcaataagattctctacaatct 227  Q
    |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  30011431 tgctcatacttacccctacccaatatcatcttatacacaatatcttcaataagattctctacaatct 30011497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 60 - 224
Target Start/End: Complemental strand, 30006215 - 30006051
Alignment:
Q  60 gtacctgaaggtcaaaaatgcctagccaaggaacataatccgccagattaaaagctcccatcaaagttaatccatctttaatcatcttcttcaagtcaaa 159  Q
    |||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||  | | | |||  ||  | ||| |||| ||||||    
T  30006215 gtacctgaaggtcaaaaacgcctagccaaggtacataatcagccagattaaaagctcccatcaaagccattgcttctagaactaacttattcatgtcaaa 30006116  T
Q  160 ttgctcatacttacccctacccaatatcatcttatgcacaatatcatcaataagattctctacaa 224  Q
    |||||||||||||| || ||| || |||||||||| ||||||||| |||||||||||||||||||    
T  30006115 ttgctcatacttactccgaccaaacatcatcttatacacaatatcctcaataagattctctacaa 30006051  T

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Target: chr5; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 61 - 224
Target Start/End: Original strand, 30044940 - 30045103
Alignment:
Q  61 tacctgaaggtcaaaaatgcctagccaaggaacataatccgccagattaaaagctcccatcaaagttaatccatctttaatcatcttcttcaagtcaaat 160  Q
    ||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||| |||||||  ||||| |||| || ||   ||||||||||||||    
T  30044940 tacctgaagatcaaaaattcctagccaaggaacataatcagccagattaaaagctccaatcaaagccaatccttcttgaaccaaactcttcaagtcaaat 30045039  T
Q  161 tgctcatacttacccctacccaatatcatcttatgcacaatatcatcaataagattctctacaa 224  Q
    ||||||||||||| || ||| || |||| ||||| ||||||||| || || |||||||||||||    
T  30045040 tgctcatacttactccgaccaaacatcaacttatacacaatatcttctattagattctctacaa 30045103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 61 - 224
Target Start/End: Complemental strand, 29952362 - 29952199
Alignment:
Q  61 tacctgaaggtcaaaaatgcctagccaaggaacataatccgccagattaaaagctcccatcaaagttaatccatctttaatcatcttcttcaagtcaaat 160  Q
    ||||||||| ||||| |  |||||||||||||||||||| ||||||||||||||||| | |||||  ||| | |||| || || | |||| |||||||||    
T  29952362 tacctgaagatcaaatacacctagccaaggaacataatcagccagattaaaagctccaaccaaagccaatacgtcttgaaccaccctctttaagtcaaat 29952263  T
Q  161 tgctcatacttacccctacccaatatcatcttatgcacaatatcatcaataagattctctacaa 224  Q
    || |||||||| | || ||||||||||||||||| ||||||||| |||||||||||||||||||    
T  29952262 tgatcatacttgctccgacccaatatcatcttatacacaatatcctcaataagattctctacaa 29952199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 82 - 222
Target Start/End: Original strand, 30070791 - 30070931
Alignment:
Q  82 tagccaaggaacataatccgccagattaaaagctcccatcaaagttaatccatctttaatcatcttcttcaagtcaaattgctcatacttacccctaccc 181  Q
    |||||||||||||||||| ||||||||||||||||| ||||||   ||| | | || || ||  || ||||||||||||||||||||||||| ||  ||     
T  30070791 tagccaaggaacataatcagccagattaaaagctccaatcaaaaccaattcttgttgaaccaaatttttcaagtcaaattgctcatacttactccgtcca 30070890  T
Q  182 aatatcatcttatgcacaatatcatcaataagattctctac 222  Q
    || |||| ||||| ||||||||| || || |||||||||||    
T  30070891 aacatcaacttatacacaatatcttctattagattctctac 30070931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 61 - 223
Target Start/End: Complemental strand, 29944241 - 29944079
Alignment:
Q  61 tacctgaaggtcaaaaatgcctagccaaggaacataatccgccagattaaaagctcccatcaaagttaatccatctttaatcatcttcttcaagtcaaat 160  Q
    ||||||||| |||||  |||||| ||||||||||||||| |||| |||||||||||| |||||||  | | | |||| || || | |||| | |||||      
T  29944241 tacctgaagatcaaatgtgcctaaccaaggaacataatcagccatattaaaagctccaatcaaagccattacgtcttgaaccaacctctttaggtcaata 29944142  T
Q  161 tgctcatacttacccctacccaatatcatcttatgcacaatatcatcaataagattctctaca 223  Q
    || |||||||||| || |||||| | |||||||| ||||||||| || |||| ||||||||||    
T  29944141 tgatcatacttactccgacccaacaccatcttatacacaatatcctctataacattctctaca 29944079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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