View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13064_high_10 (Length: 338)
Name: NF13064_high_10
Description: NF13064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13064_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 10 - 320
Target Start/End: Complemental strand, 29110420 - 29110110
Alignment:
| Q |
10 |
aagaatataccacataactaggcaattgaggtgttttcctgcaagttacccaaaaagttcttcaccaaatgatcatgatgatttctatgagaccgccaca |
109 |
Q |
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| T |
29110420 |
aagaaaataccacataactaggcaattgaggtgttttcctgcaagttacccaaaaagttcttcaccaaatgatcatgatgatttctatgagaccgccaca |
29110321 |
T |
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| Q |
110 |
agttgcatcgccatgaatgtatgagtgagttatttgtgttaactttaaagaactcaggaggaaactttatccaatgagtatttcatctaaatgcattctc |
209 |
Q |
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| T |
29110320 |
agttgcatcgccatgaatgtatgaatgagttatttgtgttaactttaaagaactcaggaggaaactttatccaatgagtatttcatctaaatgcattctc |
29110221 |
T |
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| Q |
210 |
atgatattgagatgcaagagggcaaattatctttttctctatctggtaaaccatgttaactaccttagaagcaatttgcttaccaagttttgtctctttg |
309 |
Q |
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| T |
29110220 |
atgatattgagatgcaagagggcaaattatctttttctctatttggtaaaccatgttaactaccttagaagtaatgtgcttaccaagttttgtctctata |
29110121 |
T |
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| Q |
310 |
gcgaagacaag |
320 |
Q |
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| T |
29110120 |
gcgaagacaag |
29110110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 198
Target Start/End: Complemental strand, 42439352 - 42439295
Alignment:
| Q |
141 |
atttgtgttaactttaaagaactcaggaggaaactttatccaatgagtatttcatcta |
198 |
Q |
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||||||||||||||| | || ||||||||| |||||||| |||| |||||||||||| |
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| T |
42439352 |
atttgtgttaacttttacaaagtcaggaggagactttatctaatgtgtatttcatcta |
42439295 |
T |
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