View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13064_high_12 (Length: 303)

Name: NF13064_high_12
Description: NF13064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13064_high_12
NF13064_high_12
[»] chr7 (6 HSPs)
chr7 (23-303)||(40149912-40150192)
chr7 (86-297)||(40150069-40150281)
chr7 (86-235)||(40150446-40150596)
chr7 (23-80)||(40156285-40156342)
chr7 (86-168)||(40150257-40150340)
chr7 (214-297)||(40150481-40150564)


Alignment Details
Target: chr7 (Bit Score: 281; Significance: 1e-157; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 23 - 303
Target Start/End: Original strand, 40149912 - 40150192
Alignment:
Q  23 tgtaaaagacagatatagtatcccaagcgatgtagtacccaaatcttcctcctgaaaaattccaaacacacaaattcataattattcaccactaacctcc 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40149912 tgtaaaagacagatatagtatcccaagcgatgtagtacccaaatcttcctcctgaaaaattccaaacacacaaattcataattattcaccactaacctcc 40150011  T
Q  123 aaattcacaaccaaaattaataatacagcagcttaatagttcaatttcatccctcataaacacacaaatttataattattcaaaactaccaccaaattca 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40150012 aaattcacaaccaaaattaataatacagcagcttaatagttcaatttcatccctcataaacacacaaatttataattattcaaaactaccaccaaattca 40150111  T
Q  223 caatcaaatttaataatacattagcttaatagttccatttcatacctcataaacgcacaaatttacaattattcaaaatta 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40150112 caatcaaatttaataatacattagcttaatagttccatttcatacctcataaacgcacaaatttacaattattcaaaatta 40150192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 86 - 297
Target Start/End: Original strand, 40150069 - 40150281
Alignment:
Q  86 aaacacacaaattcataattattcaccactaacctccaaattcacaaccaaaattaataatacagcagcttaatagttcaatttcatccctcataaacac 185  Q
    ||||||||||||| |||||||||||  |||| || |||||||||||| |||| |||||||||||  ||||||||||||| ||||||| |||||||||| |    
T  40150069 aaacacacaaatttataattattcaaaacta-ccaccaaattcacaatcaaatttaataatacattagcttaatagttccatttcatacctcataaacgc 40150167  T
Q  186 acaaatttataattattcaaaacta-ccaccaaattcacaatcaaatttaataatacattagcttaatagttc-catttcatacctcataaacgcacaaa 283  Q
    ||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||  ||||||  |||| ||||| | ||||    
T  40150168 acaaatttacaattattcaaaattaaccaccaaattcacaatcaaatttaataatacattaacttaatagttcaaatttcactcctcctaaacacccaaa 40150267  T
Q  284 tttacaattattca 297  Q
    || |||||||||||    
T  40150268 ttcacaattattca 40150281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 86 - 235
Target Start/End: Original strand, 40150446 - 40150596
Alignment:
Q  86 aaacacacaaattcataattattcaccactaacctccaaattcacaaccaaaattaataatacagcagcttaatagttcaatttcatccctcataaacac 185  Q
    |||||||| ||||||  ||||||| ||| |||||||||||||||||| |||| | | ||| ||||   ||||| ||||||||||||| |||||| |||||    
T  40150446 aaacacactaattcacgattattctccagtaacctccaaattcacaatcaaattaactaacacagtttcttaacagttcaatttcattcctcattaacac 40150545  T
Q  186 acaaatttataattattcaaaacta-ccaccaaattcacaatcaaatttaa 235  Q
    ||||||| | || ||||||  |||| || |||||||||||||||| |||||    
T  40150546 acaaattcacaaatattcaccactagcctccaaattcacaatcaattttaa 40150596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 80
Target Start/End: Original strand, 40156285 - 40156342
Alignment:
Q  23 tgtaaaagacagatatagtatcccaagcgatgtagtacccaaatcttcctcctgaaaa 80  Q
    ||||||||||| ||||| |||||||||||| || ||||||||||| ||||||||||||    
T  40156285 tgtaaaagacaaatataatatcccaagcgaagtcgtacccaaatcctcctcctgaaaa 40156342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 86 - 168
Target Start/End: Original strand, 40150257 - 40150340
Alignment:
Q  86 aaacacacaaattcataattattcaccactaacctccaaattcac-aaccaaaattaataatacagcagcttaatagttcaatt 168  Q
    |||||| |||||||| |||||||||||||||  |||||||||||| |||  |  ||| |||||||| | |||||||||||||||    
T  40150257 aaacacccaaattcacaattattcaccactactctccaaattcacgaacacagtttactaatacagtaccttaatagttcaatt 40150340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 214 - 297
Target Start/End: Original strand, 40150481 - 40150564
Alignment:
Q  214 ccaaattcacaatcaaatttaataatacattagcttaatagttccatttcatacctcataaacgcacaaatttacaattattca 297  Q
    ||||||||||||||||||| | ||| ||| |  ||||| ||||| ||||||| |||||| ||| |||||||| |||| ||||||    
T  40150481 ccaaattcacaatcaaattaactaacacagtttcttaacagttcaatttcattcctcattaacacacaaattcacaaatattca 40150564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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