View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13064_high_17 (Length: 227)
Name: NF13064_high_17
Description: NF13064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13064_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 19 - 198
Target Start/End: Complemental strand, 19795752 - 19795573
Alignment:
| Q |
19 |
ctaatcaatggggtttgattccttacaatagggttgcttctgtggcgatgaagttttataaggagaagtttttgaagcatgataaggagaggtttgagaa |
118 |
Q |
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| T |
19795752 |
ctaatcaatggggtttgattccatacaatagggttgcttctgtggcgatgaagttttataaggagaagtttttgaagcatgataaggagaggtttgagaa |
19795653 |
T |
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| Q |
119 |
gtacttggaggatgtgaaggcagggaagactactattgctgctggtgctttgcttcctcacgagattatagagtctttgg |
198 |
Q |
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| T |
19795652 |
gtacttggaggatgtgaaggcagggaagactactattgctgctggtgctttgcttcctcacgagattatagagtctttgg |
19795573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 19 - 210
Target Start/End: Original strand, 19785835 - 19786026
Alignment:
| Q |
19 |
ctaatcaatggggtttgattccttacaatagggttgcttctgtggcgatgaagttttataaggagaagtttttgaagcatgataaggagaggtttgagaa |
118 |
Q |
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| T |
19785835 |
ctaatcaatggggtttgattccttacaatagagttgcttctgtggcgatgaagttttataaggaaaagtttttgaagcatgataaggagaggtttgagaa |
19785934 |
T |
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| Q |
119 |
gtacttggaggatgtgaaggcagggaagactactattgctgctggtgctttgcttcctcacgagattatagagtctttgggggatggagatg |
210 |
Q |
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| T |
19785935 |
gtacttgaaggatgtgaaggcaggaaagactactattgctgctggtgctttgcttcctcaccagattatagagtctttgggggatggagatg |
19786026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 19 - 196
Target Start/End: Complemental strand, 15835059 - 15834882
Alignment:
| Q |
19 |
ctaatcaatggggtttgattccttacaatagggttgcttctgtggcgatgaagttttataaggagaagtttttgaagcatgataaggagaggtttgagaa |
118 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
15835059 |
ctaatcaatggggtttgattccttataatagggttgcttctgtggccatggagttttataaggagaagtttttgaagcatgatgaggagaggtttgagaa |
15834960 |
T |
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| Q |
119 |
gtacttggaggatgtgaaggcagggaagactactattgctgctggtgctttgcttcctcacgagattatagagtcttt |
196 |
Q |
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| T |
15834959 |
gtacttgcaggatgtgaaggcagggaagactactatggctgctggtgctttgcttcctcataagattataaagtcttt |
15834882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 106; Significance: 3e-53; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 33 - 210
Target Start/End: Complemental strand, 47712637 - 47712460
Alignment:
| Q |
33 |
ttgattccttacaatagggttgcttctgtggcgatgaagttttataaggagaagtttttgaagcatgataaggagaggtttgagaagtacttggaggatg |
132 |
Q |
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|||||||||||||| |||||||| |||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||| |
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| T |
47712637 |
ttgattccttacaacagggttgcgtctgtggcgatggagttttataaagagaagtttttgaagcatgataaaaagaggtttgagaagtatttggaggatg |
47712538 |
T |
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| Q |
133 |
tgaaggcagggaagactactattgctgctggtgctttgcttcctcacgagattatagagtctttgggggatggagatg |
210 |
Q |
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|||| | ||||||||||| || ||||||||||||||||||||||| || ||||| ||| |||||||||||||||| |
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| T |
47712537 |
tgaaagtggggaagactacgatcgctgctggtgctttgcttcctcatgatattattcggtcgttgggggatggagatg |
47712460 |
T |
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