View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13064_high_2 (Length: 542)
Name: NF13064_high_2
Description: NF13064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13064_high_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-101; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 289 - 522
Target Start/End: Complemental strand, 50573177 - 50572940
Alignment:
| Q |
289 |
ggcttagttttccagtgtaattaacttcaagtggaggacatcgataatatagatacatagtaggaatgtgataaaccnnnnnnngaacaagaacacacct |
388 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
50573177 |
ggcttagttttccagtgtaattaacttcgagtggaggacatcaataatatagatacatagtaggaatgtgataaaccaaaaaaagaacaagaacacacct |
50573078 |
T |
|
| Q |
389 |
ttcttgctgccaatttagattgttgctca----tagctcaaatacaaatctaggtaaattagaacagcataagaaacagaattccttcaaagtactatgc |
484 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50573077 |
ttcttgctgccaatttagattgttgctcacttttagctcaaatacaaatctaggtaaattagaacagcataagaaacagaattccttcaaagtactatgc |
50572978 |
T |
|
| Q |
485 |
caaattatttggttttgcaaaaggaacaatgattaggg |
522 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
50572977 |
caaattatttggttttgcaaaaggaacactgattaggg |
50572940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 11 - 231
Target Start/End: Complemental strand, 50573472 - 50573252
Alignment:
| Q |
11 |
cataggaacacgcaagaccatccaaccatctgcggaagttgacattcatatggcttcgaatcttgaaatcctaaagcataaataaaggctaaggaatcaa |
110 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
50573472 |
cataggaacgcgcaagaccatccaaccatttgcggaagttgacattcatctggctgcgaatcttgaaatcctaaagcataaataaaggcaaaggaatcaa |
50573373 |
T |
|
| Q |
111 |
gtattacgagnnnnnnncacaaattgttgatgaaacaattccagtgaagtggataatctgaaagagaagaagttgtacctcaaatttagccggaaaacca |
210 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50573372 |
gtattacgagaaaaaaacacaaattgttgatgaaacaattccagtgaagtggataatctgaaagagaagaagttgtacctcaaatttagccggaaaacca |
50573273 |
T |
|
| Q |
211 |
agcttttgcatgataccggtc |
231 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
50573272 |
agcttttgcatgataccggtc |
50573252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 303 - 511
Target Start/End: Complemental strand, 50567334 - 50567120
Alignment:
| Q |
303 |
gtgtaattaacttcaagtggaggacatcgataatatagatacatagtaggaatgtgataaaccnnnnnnngaacaagaacacacctttcttgctgccaat |
402 |
Q |
| |
|
|||| |||||| || ||||||| ||||||||||||| |||||||| | ||||| ||||||| ||||||||||||||||| ||||| |||||| |
|
|
| T |
50567334 |
gtgtgattaacctcgagtggagaacatcgataatatgcatacatagcatgaatgagataaacagataaaagaacaagaacacaccttccttgcagccaat |
50567235 |
T |
|
| Q |
403 |
ttagattgttgctcatag-ctcaaatacaaatctaggtaaattagaacagcataagaaacagaatt----ccttc-aaagtactatgccaaattatttgg |
496 |
Q |
| |
|
||||| |||| ||||| | ||| | ||||||||||| ||||||| |||| ||||||||| |||| | ||||| ||||||| ||| ||||||||||| |
|
|
| T |
50567234 |
ttagactgtttctcattgcctccagtacaaatctagttaaattacaacatcataagaaagagaaattaacccttcaaaagtacaatgtgaaattatttgg |
50567135 |
T |
|
| Q |
497 |
ttttgcaaaaggaac |
511 |
Q |
| |
|
|||||||||| |||| |
|
|
| T |
50567134 |
ttttgcaaaacgaac |
50567120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 373 - 417
Target Start/End: Original strand, 9986620 - 9986664
Alignment:
| Q |
373 |
gaacaagaacacacctttcttgctgccaatttagattgttgctca |
417 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
9986620 |
gaacaagaacacaccttccttgctgccaatttagactgttgctca |
9986664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 69 - 113
Target Start/End: Complemental strand, 50562138 - 50562094
Alignment:
| Q |
69 |
aatcttgaaatcctaaagcataaataaaggctaaggaatcaagta |
113 |
Q |
| |
|
||||| ||||||||||||||||| ||||| | ||||||||||||| |
|
|
| T |
50562138 |
aatctggaaatcctaaagcataagtaaagccgaaggaatcaagta |
50562094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 136 - 226
Target Start/End: Complemental strand, 50567514 - 50567427
Alignment:
| Q |
136 |
gttgatgaaacaattccagtgaagtggataatctgaaagagaagaagttgtacctcaaatttagccggaaaaccaagcttttgcatgatac |
226 |
Q |
| |
|
||||||||||||||| ||| ||| |||||| |||||||| ||| ||||||||| |||||| | ||||||||| |||||| ||||||| |
|
|
| T |
50567514 |
gttgatgaaacaatttcagcgaa---gataatatgaaagagtagatgttgtaccttaaatttgacgggaaaaccacacttttgtatgatac |
50567427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University