View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13064_low_1 (Length: 778)
Name: NF13064_low_1
Description: NF13064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13064_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 568; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 568; E-Value: 0
Query Start/End: Original strand, 17 - 673
Target Start/End: Original strand, 42899235 - 42899912
Alignment:
| Q |
17 |
ctaccaaccatcatctgcagcttcacctcacatgtcagctacagcattgttacagaaagcagctcagatgggtgcaaccagctcatgctcatcacagtcc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42899235 |
ctaccaaccatcatctgcagcttcacctcacatgtcagctacagcattgttacagaaagcagctcagatgggtgcaaccagctcatgctcatcacagtcc |
42899334 |
T |
|
| Q |
117 |
atgatgagtgggacccaccaacagggtcacgtgtctattgttgactctgccaccaacaacatgataaactcaaatggtaattttagtttgaatttgtcct |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42899335 |
atgatgagtgggacccaccaacagggtcacgtgtctattgttgactctgccaccaacaacatgataaactcaaatggtaattttagtttgaatttgtcct |
42899434 |
T |
|
| Q |
217 |
catgtgaagaccaaatgataaacaactctttctcttcttctggatttcatggaacttcttttgaggatacttttgctggaaatattcttcattcaaatca |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42899435 |
catgtgaagaccaaatgataaacaactctttctcttcttctggatttcatggaacttcttttgaggatacttttgctggaaatattcttcattcaaatca |
42899534 |
T |
|
| Q |
317 |
agatcataatatcaatcatgatggtgataatgatattacaaaaacaaccaccaatgatgacga---------tggaggaaacaatgcatttacaagagat |
407 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
42899535 |
agatcataatatcaatcatgatggtgataatgatattccaaaaacaaccaccaatgatgacgatgttgccgctggaggaaacaatgcatttacaagagat |
42899634 |
T |
|
| Q |
408 |
ttcttaggtcttaaaccactctctgatagtgatatcctcaccattgctggtatgggaagttgcatgaactcttccaactccaatcatcaagaaaaccatt |
507 |
Q |
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| T |
42899635 |
ttcttaggtcttaaaccactctctgatagtgatatcctcaccattgctggtatgggaagttgcatgaacccttccaactccaatcatcaagaaaaccatt |
42899734 |
T |
|
| Q |
508 |
cccaaaaaccatgggaaggtaattagtttggtgtatatatctttc------------nnnnnnngtcttcataatttaaactttattttatcctttttgt |
595 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |
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| T |
42899735 |
cccaaaaaccatgggaaggtaattagtttggtgtatatatctttctttttttgcccttttttttgtcttcataatttaaaatttattttatcctttttgt |
42899834 |
T |
|
| Q |
596 |
atgtgaaatactgtcactattcttcccaaagggaagggaccattcggaatcaaatatttttcttttcatttcttatat |
673 |
Q |
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| T |
42899835 |
acgtgaaatactgtcactattcttcccaaagggaagggaccattcggaatcaaatatttttcttttcatttcttatat |
42899912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 665 - 772
Target Start/End: Original strand, 42900836 - 42900943
Alignment:
| Q |
665 |
ttcttatatatatcttgttattttacaaaacatgcatgaccataatatttctaaggtgtgtgtgatgtaatacaaatatgcaagtaagagtaattaatgt |
764 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42900836 |
ttcttatatatatcttgttattttacaaaacatgcatgaccataatatttctaaggtgtgtgtgatgtaatacaaatatgcaagtaagagtaattaatgt |
42900935 |
T |
|
| Q |
765 |
gtacatag |
772 |
Q |
| |
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|||||||| |
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|
| T |
42900936 |
gtacatag |
42900943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 45 - 94
Target Start/End: Complemental strand, 5787666 - 5787617
Alignment:
| Q |
45 |
cacatgtcagctacagcattgttacagaaagcagctcagatgggtgcaac |
94 |
Q |
| |
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|||||||||||||| |||||||| |||||||||||||| ||||||||||| |
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| T |
5787666 |
cacatgtcagctactgcattgttgcagaaagcagctcaaatgggtgcaac |
5787617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 31 - 94
Target Start/End: Original strand, 36990837 - 36990900
Alignment:
| Q |
31 |
ctgcagcttcacctcacatgtcagctacagcattgttacagaaagcagctcagatgggtgcaac |
94 |
Q |
| |
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||||| ||||||||||||||||||| || |||||| |||| ||||| ||||| ||||||||||| |
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| T |
36990837 |
ctgcaacttcacctcacatgtcagccactgcattgctacaaaaagctgctcaaatgggtgcaac |
36990900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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