View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13064_low_10 (Length: 410)
Name: NF13064_low_10
Description: NF13064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13064_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 118 - 345
Target Start/End: Complemental strand, 22683120 - 22682892
Alignment:
| Q |
118 |
ttaacatataattgattacttcatcttgatttttaacctagaatacaatgcattaatctcaccaatatcttgtcaattttagttcctttgatctcatcga |
217 |
Q |
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| T |
22683120 |
ttaacatataattgattacttcagcttgatttttaacctagaatacaatgcattaatctcaccaatatcttgtcaattttagttcctttgatctcatcca |
22683021 |
T |
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| Q |
218 |
tctccccctcacttattcatgcaatagccaaaagtttctccatgatctaacaagatttatgtagcaaaact-aactactaatcgactccaaatgttgaaa |
316 |
Q |
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| T |
22683020 |
tctccccctcacttattcatgacatagccaaaagtttctccatgatctaacaagatttatgtagcaaaactaaactactaatcgactccaaatgttgaaa |
22682921 |
T |
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| Q |
317 |
caagaaaattaattcggtagtcgagtttg |
345 |
Q |
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||| |||||||||||||||||| |||||| |
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| T |
22682920 |
caacaaaattaattcggtagtccagtttg |
22682892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 107 - 170
Target Start/End: Complemental strand, 43615831 - 43615767
Alignment:
| Q |
107 |
atatttctagattaaca-tataattgattacttcatcttgatttttaacctagaatacaatgcat |
170 |
Q |
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| T |
43615831 |
atatttctagactaacaatctaattaattacttcatcttaacttttaacttaaaatacaatgcat |
43615767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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