View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13064_low_11 (Length: 403)
Name: NF13064_low_11
Description: NF13064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13064_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 381
Target Start/End: Complemental strand, 13634902 - 13634543
Alignment:
| Q |
1 |
ccatgaaaatgttctttgagattaggaagcaaaagtatcttgaagccttggacaggtagtgctccttatttttatctttatctttatcatggcatcatta |
100 |
Q |
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| T |
13634902 |
ccatgaaaatgttctttgagattaggaagcaaaagtatcttgaagccttggacaggtagtgctccttatttttatctttatctttatcatggcatcatta |
13634803 |
T |
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| Q |
101 |
tcattagggttttaaaaggtagacgtggttaagattgaggtcgctgtgatccttgatattgtgaagaatcacagtcaaatgtgacatcaatcgaagattc |
200 |
Q |
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| T |
13634802 |
tcattagggttttaaaagg---------------------tcactgtgatccttgatattgtgaagaatcacagtcaaatgcgacatcaatcgaagattc |
13634724 |
T |
|
| Q |
201 |
ttagtggtttcgataacataaaaaactgttgtgttgtggtctagatcgcactcacaaaactctatttaaaatcctaattataatcagggttttatctcta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
13634723 |
ttagtggtttcgataacataaaaaactgttgtgttgtggtctagatcgcactcacaaaactctatttaaaatcctaattataatcagggttttatcacta |
13634624 |
T |
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| Q |
301 |
acaattgccatcacaattctttatattgttgagaatcaatgtcaaacgtagattcaatcaatatcatgttgtgcaaaaacc |
381 |
Q |
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| T |
13634623 |
acaattgccatcacaattctttatattgttgagaatcaaagtcgaacgtagattcaatcaatatcatgttgtgcaaaaacc |
13634543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 27532177 - 27532565
Alignment:
| Q |
1 |
ccatgaaaatgttctttgagattaggaagcaaaagtatcttgaagccttggacaggtagtgctccttatttttatctttatctttatcatg--------- |
91 |
Q |
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| T |
27532177 |
ccatgaaaatgttttttcagattaggaagcagaagtatttggaagccttggacaggtagtgctcctt-tttttatctttatctttatcatgacatcatta |
27532275 |
T |
|
| Q |
92 |
-----------gcatcattatcattagggttttaaaaggtagacgtggttaagattgaggtcgctgtgatccttgatattgtgaagaatcacagtcaaat |
180 |
Q |
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|||||||||||||||||||||||||| |||||| | ||||||||||| ||| | |||||||||||||||||||||||||||| |||||| |
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| T |
27532276 |
tcatctgcatggcatcattatcattagggttttaaaaagtagacttcgttaagattgatgtcaccgtgatccttgatattgtgaagaatcacaatcaaat |
27532375 |
T |
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| Q |
181 |
gtgacatcaatcgaagattcttagtggtttcgataacataaaaaactgttgtgttgtggtctagatcgcactcacaaaactctatttaaaatcctaatta |
280 |
Q |
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| ||| |||||||||||||| |||||||||||| ||||||||||| |||||||| ||||| | |||| ||||||||||||||||||||||||||| |||| |
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| T |
27532376 |
gcgacctcaatcgaagattcatagtggtttcgacaacataaaaaattgttgtgtcgtggttttgatcacactcacaaaactctatttaaaatcct-atta |
27532474 |
T |
|
| Q |
281 |
taatcagggttttatctctaacaattgccatcacaattctttatattgttgagaatcaatgtcaaacgtagattcaatcaatatcatgttg |
371 |
Q |
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||||| | |||||||| ||||| |||||||||||||||||| |||||||| ||||| ||||| ||||||||||||||| |||||||| |
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| T |
27532475 |
taatcggagttttatcactaacgattgccatcacaattcttgatattgttaggaatcgtaatcaaatgtagattcaatcaatgtcatgttg |
27532565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 9 - 60
Target Start/End: Complemental strand, 13644341 - 13644290
Alignment:
| Q |
9 |
atgttctttgagattaggaagcaaaagtatcttgaagccttggacaggtagt |
60 |
Q |
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| T |
13644341 |
atgttctttgagattaggaagcagaagtattttgaagccttggacaggtagt |
13644290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 13689850 - 13689792
Alignment:
| Q |
1 |
ccatgaaaatgttctttgagattaggaagcaaaagtatcttgaagccttggacaggtag |
59 |
Q |
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||||||||||| |||||||||||||||||||||| ||| ||||| |||||| |||||| |
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| T |
13689850 |
ccatgaaaatgctctttgagattaggaagcaaaaatattatgaagtcttggagaggtag |
13689792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 47414882 - 47414833
Alignment:
| Q |
3 |
atgaaaatgttctttgagattaggaagcaaaagtatcttgaagccttgga |
52 |
Q |
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||||| || ||||| |||||||||||||| |||||||||||||| ||||| |
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| T |
47414882 |
atgaagattttcttcgagattaggaagcagaagtatcttgaagcgttgga |
47414833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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