View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13064_low_12 (Length: 365)
Name: NF13064_low_12
Description: NF13064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13064_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 326; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 349
Target Start/End: Original strand, 40150193 - 40150542
Alignment:
| Q |
1 |
accaccaaattcacaatcaaatttaataatacattaacttaatagctcaaatttcactcctcctaa-cacccaaattcacaattattcaccactactctc |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
40150193 |
accaccaaattcacaatcaaatttaataatacattaacttaatagttcaaatttcactcctcctaaacacccaaattcacaattattcaccactactctc |
40150292 |
T |
|
| Q |
100 |
caaattcacgaacacagtttactaatacagtaccttaatagttcaattctattcagcataaacaaccaaactcacagatatttaccactagcttcccaat |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |
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| T |
40150293 |
caaattcacgaacacagtttactaatacagtaccttaatagttcaattctattcagcataaacaaccaaactcacaaatatttaccaatagcttcccaat |
40150392 |
T |
|
| Q |
200 |
tcaaaatcaaatttacaaatacagtaacttaatagtttgagttcatttctcataaacacaccaattcacgattattctccagtaacctccaaattcacaa |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
40150393 |
tcaaaatcaaatttacaaatacagtaacttaatagtttgagttcatttctcataaacacactaattcacgattattctccagtaacctccaaattcacaa |
40150492 |
T |
|
| Q |
300 |
tcaaattaactaacacagtttcttaacagttcaatttcattcctcattaa |
349 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40150493 |
tcaaattaactaacacagtttcttaacagttcaatttcattcctcattaa |
40150542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 40150099 - 40150143
Alignment:
| Q |
1 |
accaccaaattcacaatcaaatttaataatacattaacttaatag |
45 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
40150099 |
accaccaaattcacaatcaaatttaataatacattagcttaatag |
40150143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 303
Target Start/End: Original strand, 40150484 - 40150590
Alignment:
| Q |
197 |
aattcaaaatcaaatttacaaatacagtaacttaatagtttgagttcatttctcataaacacaccaattcacgattattctccagtaacctccaaattca |
296 |
Q |
| |
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|||||| ||||||||| || || ||||| ||||| |||| | |||||| ||||| ||||||| ||||||| | ||||| ||| || |||||||||||| |
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| T |
40150484 |
aattcacaatcaaattaactaacacagtttcttaacagttcaatttcattcctcattaacacacaaattcacaaatattcaccactagcctccaaattca |
40150583 |
T |
|
| Q |
297 |
caatcaa |
303 |
Q |
| |
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||||||| |
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| T |
40150584 |
caatcaa |
40150590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 253 - 346
Target Start/End: Original strand, 40149975 - 40150068
Alignment:
| Q |
253 |
aaacacaccaattcacgattattctccagtaacctccaaattcacaatcaaattaactaacacagtttcttaacagttcaatttcattcctcat |
346 |
Q |
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|||||||| |||||| ||||||| ||| |||||||||||||||||| |||| | | ||| |||| ||||| ||||||||||||| |||||| |
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| T |
40149975 |
aaacacacaaattcataattattcaccactaacctccaaattcacaaccaaaattaataatacagcagcttaatagttcaatttcatccctcat |
40150068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 197 - 306
Target Start/End: Original strand, 40150106 - 40150215
Alignment:
| Q |
197 |
aattcaaaatcaaatttacaaatacagtaacttaatagtttgagttcatttctcataaacacaccaattcacgattattctccagtaacctccaaattca |
296 |
Q |
| |
|
|||||| ||||||||||| |||||| || |||||||||| | ||||| ||||||||| ||| |||| || ||||||| | ||||| ||||||||| |
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| T |
40150106 |
aattcacaatcaaatttaataatacattagcttaatagttccatttcatacctcataaacgcacaaatttacaattattcaaaattaaccaccaaattca |
40150205 |
T |
|
| Q |
297 |
caatcaaatt |
306 |
Q |
| |
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|||||||||| |
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|
| T |
40150206 |
caatcaaatt |
40150215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 108
Target Start/End: Original strand, 40150481 - 40150584
Alignment:
| Q |
5 |
ccaaattcacaatcaaatttaataatacattaacttaatagctcaaatttcactcctcct-aacacccaaattcacaattattcaccactactctccaaa |
103 |
Q |
| |
|
||||||||||||||||||| | ||| ||| | ||||| || |||| ||||| ||||| | ||||| ||||||||||| |||||||||||| ||||||| |
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|
| T |
40150481 |
ccaaattcacaatcaaattaactaacacagtttcttaacagttcaa-tttcattcctcattaacacacaaattcacaaatattcaccactagcctccaaa |
40150579 |
T |
|
| Q |
104 |
ttcac |
108 |
Q |
| |
|
||||| |
|
|
| T |
40150580 |
ttcac |
40150584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 147
Target Start/End: Original strand, 40149976 - 40150057
Alignment:
| Q |
65 |
aacacccaaattcacaattattcaccactactctccaaattcacgaacacagtttactaatacagtaccttaatagttcaatt |
147 |
Q |
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||||| |||||||| ||||||||||||||| |||||||||||| ||| | ||| |||||||| | ||||||||||||||| |
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| T |
40149976 |
aacacacaaattcataattattcaccactaacctccaaattcac-aaccaaaattaataatacagcagcttaatagttcaatt |
40150057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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