View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13064_low_13 (Length: 346)
Name: NF13064_low_13
Description: NF13064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13064_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 8 - 339
Target Start/End: Original strand, 30856524 - 30856847
Alignment:
| Q |
8 |
cgaagaatatcgtaatcatgttctacaactatgcaaagatgtaaaccctctaacctctaggtatgtctctattctctttgcccaaaacatcattgttttc |
107 |
Q |
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| T |
30856524 |
cgaaaaatatcgtaattatgttctacaactatgcaaagatgtaaagcatctagcctctaggtatgtctctattctctttgcccaaaacatcattgttttc |
30856623 |
T |
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| Q |
108 |
tccatctataaatgatccatggaggaatttgtgaatgactttattcggccgcaagttcgtatgaaccttgactctgacatcacttcataaccgatgcatc |
207 |
Q |
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| T |
30856624 |
tccatctataaacgatcgatggaggaatttgtgaatgactttattcggccgcaagttcgtatgaaccttgactctgacatcacttcataaccgatgc--- |
30856720 |
T |
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| Q |
208 |
cgtgatccgacttcataatcatgtttagaatagagtattagaatagaaaatcctacttcatccctnnnnnnnnnnnntcctacttcagaatcaaatacat |
307 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
30856721 |
----atccgacttcataatcatgtttagaatagaatattagaatagaaaatcctacttcatccct-aaaaaaaaaaatcctacttcagaatcaaatacac |
30856815 |
T |
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| Q |
308 |
ctctagtcgtttgttcttcaagattcatagtc |
339 |
Q |
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||| ||||||||||||| |||||||||||||| |
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| T |
30856816 |
ctcaagtcgtttgttctccaagattcatagtc |
30856847 |
T |
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