View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13064_low_18 (Length: 292)
Name: NF13064_low_18
Description: NF13064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13064_low_18 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 10 - 280
Target Start/End: Original strand, 34740496 - 34740761
Alignment:
| Q |
10 |
aagaatatccaaaaatgcactaaaattcttccaaatctagtaatcatatgatagtatattatgtttatataatttgatctataagtaagggtagtctcaa |
109 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
34740496 |
aagaaaatccaaaaatgcactaaaattcttccaaatctagtaatcatatgatagtatattatgtttatataatttgatctatatgtaagggtagtctcaa |
34740595 |
T |
|
| Q |
110 |
atctgaatagataaaagtaagaggcactcacatgaaagaatttcgaaatcaaatgatcttgaatggcaacatagtttctacaattaaagcaagtgtacaa |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34740596 |
atctgaatagataaaagtaagaggcactcacatgaaagaatttcgaaatcaaatcatcatgagtggcaacatagtttctacaattaaagcaagtgtacaa |
34740695 |
T |
|
| Q |
210 |
tatgggttcaatcaaattctccattttcaaagcctttctcaactcaaccaacccttcagaaaagtgattat |
280 |
Q |
| |
|
|||||| |||| |||||||| || ||||||||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
34740696 |
tatgggctcaaccaaattctgca-tttcaaagcttttctcaact----caacccttcagaaaagtgattat |
34740761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 235
Target Start/End: Original strand, 34731612 - 34731678
Alignment:
| Q |
169 |
tgaatggcaacatagtttctacaattaaagcaagtgtacaatatgggttcaatcaaattctccattt |
235 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||| |||||| | | | |||||||||||||||||| |
|
|
| T |
34731612 |
tgaacggcaacatggtttctacaattaaagcaaaaatacaatcttgttccaatcaaattctccattt |
34731678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University