View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13064_low_2 (Length: 766)
Name: NF13064_low_2
Description: NF13064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13064_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 352; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 317 - 760
Target Start/End: Original strand, 36458064 - 36458489
Alignment:
| Q |
317 |
ttattttgaattagagcttgctataaattatttctatcacctaggaggagtatgccattggttggataataggctttcactttatgtggctctctatttc |
416 |
Q |
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| T |
36458064 |
ttatttcgacttagagctt-ctacaaattacttgtatcacctaggaggagcatgccattggttggataataggctttcactttatgtggctctctatttc |
36458162 |
T |
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| Q |
417 |
attcaagtttctaattcatgataagctttagagaaactaaagtagtaatatagacattaaagtaataacgttgattccaaaacaaagaataccaatatat |
516 |
Q |
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| T |
36458163 |
a-----------------tgataagctttagagaaactaaagtagtaatatagacattaaagtaataacgttgattccaaaacaaagaataccaatatat |
36458245 |
T |
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| Q |
517 |
ttttacaattttctttttctaatcctaaactgtcacttctaaaccaaataacacccctgcgtgcatagtgattccattgttgacaaaataaatgtccttc |
616 |
Q |
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| T |
36458246 |
ttttacaattttctttttctaatcctaaactgtcacttctaacccaaataacacccctgcgtgcatagtgattccattgttgacaaaataaatgtccttc |
36458345 |
T |
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| Q |
617 |
atcttcttaaaagcttgccatgtcaacaaactatctgacgcggcttgatgagagtttccgaccgcccggctgaccttgagtttagtggcaacacgttcca |
716 |
Q |
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| T |
36458346 |
atcttcttaaaagcttgccatgtcaacaaactatctgacgcggcttgatgagagtttccgaccgcccggctgaccttgagtttagtggcaacacgttcca |
36458445 |
T |
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| Q |
717 |
gaccaccatataagttgcagaatttgatcatatacttcatatca |
760 |
Q |
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| T |
36458446 |
gaccaccatataagttgcagaatttgatcatatacttcatatca |
36458489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 15 - 316
Target Start/End: Original strand, 36457623 - 36457924
Alignment:
| Q |
15 |
cctgtggttcatctgctgcagcataatgtgtctttatggggagtgaaaaacaaaaggctcgctcggtctgttgttgtggtgagcggttgtttgatctcta |
114 |
Q |
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| T |
36457623 |
cctgtggttcatctgctgcagcataatgtgtctttatggggagtgaaaaacaaaaggctcgctcggtctgttgttgtggtgagcggttgtttggtctcta |
36457722 |
T |
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| Q |
115 |
tggattgctagaaataatataatttttatggacagtattcctaatgtgttcaatctcttagttggaaatggatgtcatcgaaaataggtagcagaccgaa |
214 |
Q |
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| T |
36457723 |
tggattgctagaaataatataatttttatggacagtattcctaatgtgttcaatctcttagttggaaatgaatgtcgtcgaaaataggtagcagaccgaa |
36457822 |
T |
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| Q |
215 |
aatgacattctgcggctggagtttatgctatttagaatgttatagaagttgaacattgtgtattggggttgagtacctcatgtactcatttgcatcttat |
314 |
Q |
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| T |
36457823 |
aatgacattctctggctggagtttatgctatttagaatgttataaaagttgaacattgtgtattggggttgagtaccttatgtactcatatgcatcttat |
36457922 |
T |
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| Q |
315 |
tt |
316 |
Q |
| |
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|| |
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| T |
36457923 |
tt |
36457924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 83 - 162
Target Start/End: Complemental strand, 11628456 - 11628377
Alignment:
| Q |
83 |
tgttgttgtggtgagcggttgtttgatctctatggattgctagaaataatataatttttatggacagtattcctaatgtg |
162 |
Q |
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| T |
11628456 |
tgttgttgttgggagaggttgtttggtctctatatattgctagaaataatataatttttatggacaatatttctaatgtg |
11628377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 601 - 675
Target Start/End: Original strand, 40874742 - 40874816
Alignment:
| Q |
601 |
aaaataaatgtccttcatcttcttaaaagcttgccatgtcaacaaactatctgacgcggcttgatgagagtttcc |
675 |
Q |
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| T |
40874742 |
aaaataagtatccatcattttcttaaatgcatgccacgtcaacaaactatctgatccagcttgatgagactttcc |
40874816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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