View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13064_low_20 (Length: 248)
Name: NF13064_low_20
Description: NF13064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13064_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 20428813 - 20429051
Alignment:
| Q |
1 |
attactcaggagattaacattaaaaggggtcttagatgacaaggagattcatctctcttttaattgcatatttataggagaaatattgcttaaattttat |
100 |
Q |
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| T |
20428813 |
attactcgggagattaacattaaaaggggccttagatgacaatgagattcatctctcttt-aattgcatatttataggagaaatattgcttaagttttat |
20428911 |
T |
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| Q |
101 |
tttcctataaccaaccaaataaatcatttttaatgatttttaaaatgggtgcttgtcgtgcaggttcatcatcaaaatgaaggttgattcagctttgaat |
200 |
Q |
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| T |
20428912 |
tttcctataaccaatcaaataaatcatttttaatgatttttaaaatgggtgcttgtcgtgcaggttcatcatcaaaatgaaggttgattcagctttgaat |
20429011 |
T |
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| Q |
201 |
gttgagaatattatatgtgttgaaccaatatttatattct |
240 |
Q |
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| T |
20429012 |
gttgagaattttatatgtgttgaaccaatatttatattct |
20429051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 131 - 197
Target Start/End: Complemental strand, 20296757 - 20296691
Alignment:
| Q |
131 |
taatgatttttaaaatgggtgcttgtcgtgcaggttcatcatcaaaatgaaggttgattcagctttg |
197 |
Q |
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| T |
20296757 |
taatgatttttaaaatgggtgtatgtggtgcaggttcgtcattaaaataaaggttgattcaactttg |
20296691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 131 - 197
Target Start/End: Complemental strand, 20322204 - 20322138
Alignment:
| Q |
131 |
taatgatttttaaaatgggtgcttgtcgtgcaggttcatcatcaaaatgaaggttgattcagctttg |
197 |
Q |
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| T |
20322204 |
taatgatttttaaaatgggtgtatgtggtgcaggttcgtcgttaaaataaaggttgattcaactttg |
20322138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 107
Target Start/End: Complemental strand, 20296844 - 20296795
Alignment:
| Q |
58 |
ttttaattgcatatttataggagaaatattgcttaaattttattttccta |
107 |
Q |
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| T |
20296844 |
ttttatttacatatttataggtgaaatattgcataagttttattttccta |
20296795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 107
Target Start/End: Complemental strand, 20322291 - 20322242
Alignment:
| Q |
58 |
ttttaattgcatatttataggagaaatattgcttaaattttattttccta |
107 |
Q |
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||||| || |||||||||||| |||||||||| ||| ||||||||||||| |
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| T |
20322291 |
ttttatttacatatttataggtgaaatattgcataagttttattttccta |
20322242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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