View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13064_low_23 (Length: 222)
Name: NF13064_low_23
Description: NF13064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13064_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 15 - 204
Target Start/End: Original strand, 38095032 - 38095221
Alignment:
| Q |
15 |
aatatatgtagctaatgggttcagattttcaatcgatttgtttctatttctttgattcctgcatttaatattattcttcatcctcttgaatttggtttat |
114 |
Q |
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| T |
38095032 |
aatatatgtagctaatgggttcagattttcaatcgatttgtttctatttctttgattcctgcatttaatattattcttcatcctcttgaatttggtttat |
38095131 |
T |
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| Q |
115 |
ccaatttttcaacctaaaattttcagtttctatccatccacttccttctctaattgtccaaaagcaacattaagcaattcatccaacttt |
204 |
Q |
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| T |
38095132 |
ccaatttttcaacctaaaattttcagtttctatccatccacttccttctctaattgtccaaaagcaacattaagcaattcatccaacttt |
38095221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 33 - 200
Target Start/End: Original strand, 47955509 - 47955673
Alignment:
| Q |
33 |
gttcagattttcaatcgatttgtttctatttctttgattcctgcatttaatattattcttcatcctcttgaatttggtttatccaatttttcaacctaaa |
132 |
Q |
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| T |
47955509 |
gttcagattttcaatcggtttgtttagatttctttgattgatgcacttaat--tattcttcatcctcttgaatttggtttatctattttttcaacctaga |
47955606 |
T |
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| Q |
133 |
attttcagtttctatccatccacttccttctctaattgtccaaaagcaacattaagcaattcatccaa |
200 |
Q |
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| T |
47955607 |
a-tttcagtttcaatctatctaattccttctccaattctgcaaaagccacgttaagcaattcatccaa |
47955673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 85 - 204
Target Start/End: Complemental strand, 2758080 - 2757962
Alignment:
| Q |
85 |
ttattcttcatcctcttgaatttggtttatccaatttttcaacctaaaattttcagtttctatccatccacttccttctctaattgtccaaaagcaacat |
184 |
Q |
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| T |
2758080 |
ttattcttcatcctcttgaatttggtttatctagtttttcaacttagaattt-cagtttctatcaattcacttccttctccaattctacaaaagcaacat |
2757982 |
T |
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| Q |
185 |
taagcaattcatccaacttt |
204 |
Q |
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| T |
2757981 |
taagcaattcatccaacttt |
2757962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 25 - 204
Target Start/End: Original strand, 32019298 - 32019475
Alignment:
| Q |
25 |
gctaatgggttcagattttcaatcgatttgtttctatttctttgattcctgcatttaatattattcttcatcctcttgaatttggtttatccaatttttc |
124 |
Q |
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||||||| ||||| ||||||||| |||||||||||||||||||||| || | ||||| |||||||||||||||| ||||||||||||| | |||||| |
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| T |
32019298 |
gctaatgagttcatattttcaattcatttgtttctatttctttgatttatggacttaat--tattcttcatcctcttcaatttggtttatctagtttttc |
32019395 |
T |
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| Q |
125 |
aacctaaaattttcagtttctatccatccacttccttctctaatt-gtccaaaagcaacattaagcaattcatccaacttt |
204 |
Q |
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| T |
32019396 |
aa-caaagaatttcagtttctatcaattcacttccttctccaattccgcaaaaagcaacattaagcaattcatccaacttt |
32019475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 40642213 - 40642253
Alignment:
| Q |
26 |
ctaatgggttcagattttcaatcgatttgtttctatttctt |
66 |
Q |
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| T |
40642213 |
ctaatgagttcaaatttgcaatcgatttgtttctatttctt |
40642253 |
T |
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