View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13064_low_3 (Length: 619)
Name: NF13064_low_3
Description: NF13064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13064_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 539; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 539; E-Value: 0
Query Start/End: Original strand, 12 - 598
Target Start/End: Original strand, 44489687 - 44490268
Alignment:
| Q |
12 |
atcatcaacttgggaggtgtagagagtttcattagtatttttgagtgcaacataattggattttgataagtattgggaggtgagttgggagagaaataaa |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
44489687 |
atcatcaacttgggaggtgtagagagtttcattagtatttttgagtgcaacataattggattttgataagtattgtgaggtgagttgggagagaaataaa |
44489786 |
T |
|
| Q |
112 |
caatctttgagagcatttattgcctctttggtaaaagtagactcaagatagaagttcaatgagttcaaaaacttttgggactgaaacatggatttttgaa |
211 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
44489787 |
caatctttgagagcatttattgtctctttggtaaaagtagactcaagatagaagttcaatgagttcaaaaatttttgggactgaaacatggatttttgaa |
44489886 |
T |
|
| Q |
212 |
ttgagaatctagcaaagtcatggactttggcattttgttttggaagtagatttgtgcaataagatggatattgggatgatttacaaatggtttctggagg |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44489887 |
ttgagaatctagcaaagtcatggactttggcattttgttttggaagtagatttgtgcaataagatggatattgggatgatttacaaatggtttctggagg |
44489986 |
T |
|
| Q |
312 |
tacaagagtgtcatttgcggtagctagaaatgcaaagaatggaaggagaaagaaaattgagaatgtagtagcaatagagaaggctttccaacccattgtt |
411 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44489987 |
tacaagggtgtcatttgcggtagctagaaatgcaaagaatggaaggagaaagaaaattgagaatgtagtagcaatagagaaggctttccaacccattgtt |
44490086 |
T |
|
| Q |
412 |
ataaaggacatgcaatattgcaatatagaaagagagctagctagatttcaaaatttatatatgtagtggttggttggggtttgtgttggatttgagttca |
511 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44490087 |
ataaaggacatgcaatattgcaatatagaaagagagctatctagatttcaaattttatatatgtagtggttggttggggtttgtgttggatttgagttca |
44490186 |
T |
|
| Q |
512 |
attcgtgcaacacatgactatagtataggtgattctattatggtgaatatttttggttgtgtcatcacgtcgactagccagcagtta |
598 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44490187 |
attcgtgcaacacatgac-----tataggtgattctattatggtgaatttttttggttgtgtcatcacgtcgactagccagcagtta |
44490268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University