View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13064_low_7 (Length: 466)
Name: NF13064_low_7
Description: NF13064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13064_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 348; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 15 - 450
Target Start/End: Original strand, 1959411 - 1959845
Alignment:
| Q |
15 |
ttttctctatctctaggtataaccatcacttcatcttcattacggttcatcatctctattgctatccttcagattttgattttaaacatagaaatgatct |
114 |
Q |
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| T |
1959411 |
ttttctctgtctctaggtataaccatcacttcatcttctttaccgttcatcatctctattgctatccttcagattttgattttagacatagaaatggtct |
1959510 |
T |
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| Q |
115 |
accattttgactttgaagggaagaataaggtgtcctatgcaaacaagtagtcaaaactatactagatcggtcaagttgggaatcggtctgccctataatc |
214 |
Q |
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| T |
1959511 |
atcattttgactttgaaga-aagaataaggcgtcctatgtaaacaagtagtcaaaactatactagattggtcgaattgggaatcggtcttacctataatc |
1959609 |
T |
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| Q |
215 |
gggcaaaacatgctgttcacaaggttcttgtagtcctcaagaaaataggtttgtatccctataatcttaatcactgctgtcctcttacttgatggaatgc |
314 |
Q |
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| T |
1959610 |
aggcaaaacatgaggttcacaaggttctcgtagtccacaagaaaataggtttgtatccctataatcttaatcactgctgtcctcttacttgatggaatgc |
1959709 |
T |
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| Q |
315 |
tacaaagttattttaattatattgtatacatgttaaaccacctttgttgtgtgtatcagaaatttccaatcttgaaatatggcaaaagagaagttccatc |
414 |
Q |
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| T |
1959710 |
tacaaagttatttgaattatattgtatacatgttaaaccacctttgttgtgtgtatcagaaatttccaatcttgaaatatggcaaaagagaagttccatc |
1959809 |
T |
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| Q |
415 |
aaggcctcttgccatggagaaagaaacataatcatg |
450 |
Q |
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| T |
1959810 |
aaggcctcttgccatggagaaagaaacataatcatg |
1959845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 14 - 312
Target Start/End: Complemental strand, 2024102 - 2023807
Alignment:
| Q |
14 |
attttctctatctctaggtataaccatcacttcatcttcattacggttcatcatctctattgctatccttcagattttgattttaaacatagaaatgatc |
113 |
Q |
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| T |
2024102 |
attttctctatctctaggtataaccatcacttcatcttctttacggttcatcatctctattgctatccttcagattttgattttaaacatagaaatgatc |
2024003 |
T |
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| Q |
114 |
taccattttgactttgaagggaagaataaggtgtcctatgcaaacaagtagtcaaaactatactagatcggtcaagttgggaatcggtctgccctataat |
213 |
Q |
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| T |
2024002 |
taccattttgattttgaagggaagaataaggtgtcctatgcaaacaagtagtcaaaactatactagatcagtcaagttgggaatcagtctgccctataat |
2023903 |
T |
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| Q |
214 |
cgggcaaaacatgctgttcacaaggttcttgtagtcctcaagaaaataggtttgtatccctataatcttaatcactgctgtcctcttacttgatggaat |
312 |
Q |
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| T |
2023902 |
cggg---tacatgatgttcacaaggttcttgtagtcctcaagaaaataggtttgtatccctataatcttaattgttgctgtcctctgacttgatggaat |
2023807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 318 - 450
Target Start/End: Complemental strand, 2023612 - 2023480
Alignment:
| Q |
318 |
aaagttattttaattatattgtatacatgttaaaccacctttgttgtgtgtatcagaaatttccaatcttgaaatatggcaaaagagaagttccatcaag |
417 |
Q |
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||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
2023612 |
aaagttattttaattatattgcatacatgttaaaccacctttattgtgtgtatcagaaatttccaatcttgaaatatggcaaaggagaagttccatcaag |
2023513 |
T |
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| Q |
418 |
gcctcttgccatggagaaagaaacataatcatg |
450 |
Q |
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| T |
2023512 |
gcctcttgccatggagaaagaaacataatcatg |
2023480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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