View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13064_low_8 (Length: 437)
Name: NF13064_low_8
Description: NF13064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13064_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 52 - 419
Target Start/End: Original strand, 42511597 - 42511971
Alignment:
| Q |
52 |
gggatagttttaatggcgccattttacatcggaagtgtcttatatgcaaagttgatgtggccaagtagcatatatttaattgattaaggggtctattaat |
151 |
Q |
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| T |
42511597 |
gggatagatttaatggcgccattttacatcggaagtgtcttatatgcaaagttgatgtggccaagtagcatatatttaattgattaaggggtctattaat |
42511696 |
T |
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| Q |
152 |
tggttgtttgtgacatgtggataactacgtacaaattccacaaaatgaataaaagtaatgtttgatatagagacagtatctttctatggcctactcctaa |
251 |
Q |
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| T |
42511697 |
tggttgtttgtgacatgtggataactacgtacaaattccacaaaatgaataaaagtaatgtttgatatagagacagtatctttctatggcctactcctaa |
42511796 |
T |
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| Q |
252 |
gaccagaagacaaatagtactgtctagtcaaactgttgagttgtggtgtgaggggtaggggatatgctcatatatgcatcctcagtgttttctttttcat |
351 |
Q |
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| T |
42511797 |
gaccagaagacaaatagtattgtctagtcaaactgttgagttgtggtgtgaggggtaggggatatgctc--atatgcatcctcagtgttttctttttcat |
42511894 |
T |
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| Q |
352 |
g---------nnnnnnnnataatgtttggctgcacatgccgtttcttctgctgtcaaaatgttaatttgatcatgtt |
419 |
Q |
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| T |
42511895 |
gtttttttttttttttttataatgtttggctgcacatgccgtttcttctgctgtcaaaatgttaatttgatcatgtt |
42511971 |
T |
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