View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13064_low_9 (Length: 423)
Name: NF13064_low_9
Description: NF13064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13064_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 124 - 405
Target Start/End: Original strand, 31913474 - 31913750
Alignment:
| Q |
124 |
tcttaatgccacttctgccccctcctcggaatataaaacatcttcaatgtctagatgttaccataagacacaatctctcggattccaacacactaataaa |
223 |
Q |
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| T |
31913474 |
tcttaatcccactactgccccctccccggaaaatacaacatcttcaacgtc---atgttaccgtaagacacaatctctcggattccaacacactcataaa |
31913570 |
T |
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| Q |
224 |
aaagacattaaacaatcttcaagcgactcagactccaattccatgacacaactttaatatcatataattgaaaacaagcgagnnnnnnncttatttgata |
323 |
Q |
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| T |
31913571 |
aaagacatgaaacaatcttcaagcgacttagactccaattccacgacacaactttaatatcatataattgaaaacaagcta--aaaaaacttatttgata |
31913668 |
T |
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| Q |
324 |
aacacatttaataacacaaatttcagatttttccttcttccaatatcacatcaaagttcacaaatttaatatcataccccca |
405 |
Q |
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| T |
31913669 |
aacacatttaataacataaatttcagatttttccttcttccaatatcacatcaaagttcacaaatttaatatcataccccca |
31913750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 11 - 66
Target Start/End: Original strand, 31913361 - 31913416
Alignment:
| Q |
11 |
caaaggcactaactactaaccaaaaactaaaagaatccaattcaatcatatatggc |
66 |
Q |
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| T |
31913361 |
caaaggcactaactcttaaccaaaaactaaaagactcaaattcaatcatatatggc |
31913416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 313 - 408
Target Start/End: Complemental strand, 4315404 - 4315311
Alignment:
| Q |
313 |
cttatttgataaacacatttaataacacaaatttcagatttttccttcttccaatatcacatcaaagttcacaaatttaatatcatacccccaatt |
408 |
Q |
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| T |
4315404 |
cttatttgataaacacatttaataacaga--tttcagatttttccttcttcaaagatcacatcaaagttcagtactttattaccatacccccaatt |
4315311 |
T |
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