View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13066_high_3 (Length: 243)
Name: NF13066_high_3
Description: NF13066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13066_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 166; Significance: 6e-89; HSPs: 12)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 11 - 224
Target Start/End: Complemental strand, 4785382 - 4785169
Alignment:
| Q |
11 |
catcatcagtaaaatgtgccaattctatcctttgcttactcttttccttttccttggtaccaacaagcttactatcctcctcactcatctccaactgcaa |
110 |
Q |
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|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
4785382 |
catcatcagtaaaatgtgacaattctatcctttgctcactcttttccttttccttggtaccaacaagcttactatcctcctcactcatctctaactgcaa |
4785283 |
T |
|
| Q |
111 |
tgcaaactctaaagctccaacaacatcactcattgacattcgttgatttccatcgtcatgcaaacaacttaaaaccatttgacaataacatttcaaacac |
210 |
Q |
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|||||||||||| | |||| ||||||||||| |||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||| |
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| T |
4785282 |
tgcaaactctaatgtcgcaaccacatcactcatcgacattcgttgatttccatcatcatgcaaacaatttaacaccatttgacaataacatttcaaacac |
4785183 |
T |
|
| Q |
211 |
tcacttgttataga |
224 |
Q |
| |
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|||||||||||||| |
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| T |
4785182 |
tcacttgttataga |
4785169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 11 - 224
Target Start/End: Complemental strand, 4817811 - 4817598
Alignment:
| Q |
11 |
catcatcagtaaaatgtgccaattctatcctttgcttactcttttccttttccttggtaccaacaagcttactatcctcctcactcatctccaactgcaa |
110 |
Q |
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|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
4817811 |
catcatcagtaaaatgtgacaattctatcctttgctcactcttttccttttccttggtaccaacaagcttactatcctcctcactcatctctaactgcaa |
4817712 |
T |
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| Q |
111 |
tgcaaactctaaagctccaacaacatcactcattgacattcgttgatttccatcgtcatgcaaacaacttaaaaccatttgacaataacatttcaaacac |
210 |
Q |
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| T |
4817711 |
tgcaaactctaatgtcgcaaccacatcactcatcgacattcgttgatttccatcatcatgcaaacaatttaacaccatttgacaataacatttcaaacac |
4817612 |
T |
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| Q |
211 |
tcacttgttataga |
224 |
Q |
| |
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|||||||||||||| |
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| T |
4817611 |
tcacttgttataga |
4817598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 78 - 224
Target Start/End: Original strand, 4862525 - 4862671
Alignment:
| Q |
78 |
cttactatcctcctcactcatctccaactgcaatgcaaactctaaagctccaacaacatcactcattgacattcgttgatttccatcgtcatgcaaacaa |
177 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4862525 |
cttagtatcttcctcactcatctccaactgcaatgcaaactctaaagctccaacaacatcactcattgacattcgttgatttccatcgtcatgcaaacaa |
4862624 |
T |
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| Q |
178 |
cttaaaaccatttgacaataacatttcaaacactcacttgttataga |
224 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4862625 |
cttaaaaccatttgacaataacatttcaaacactcacttgttataga |
4862671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 78 - 199
Target Start/End: Complemental strand, 4698670 - 4698549
Alignment:
| Q |
78 |
cttactatcctcctcactcatctccaactgcaatgcaaactctaaagctccaacaacatcactcattgacattcgttgatttccatcgtcatgcaaacaa |
177 |
Q |
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|
|||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||| |
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| T |
4698670 |
cttagtatcctcctcacttatctccaactgcaatgcaaactctaaagctccaacaacatcactcatcgacatccgttgatttccatcatcatgcaaacaa |
4698571 |
T |
|
| Q |
178 |
cttaaaaccatttgacaataac |
199 |
Q |
| |
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|| || |||||||| ||||||| |
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| T |
4698570 |
ctcaacaccatttggcaataac |
4698549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 78 - 224
Target Start/End: Complemental strand, 4713546 - 4713400
Alignment:
| Q |
78 |
cttactatcctcctcactcatctccaactgcaatgcaaactctaaagctccaacaacatcactcattgacattcgttgatttccatcgtcatgcaaacaa |
177 |
Q |
| |
|
||||| ||||||| ||||||| |||| | ||| |||| |||||||| ||||| ||||||||||| |||||||||||||||||||| ||||||||||| |
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| T |
4713546 |
cttaccatcctccccactcataaccaatttcaacgcaagctctaaagtcccaaccacatcactcatagacattcgttgatttccatcaccatgcaaacaa |
4713447 |
T |
|
| Q |
178 |
cttaaaaccatttgacaataacatttcaaacactcacttgttataga |
224 |
Q |
| |
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|| || ||||||| ||||||||||||||||||||||||||||||||| |
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| T |
4713446 |
ctcaacaccatttcacaataacatttcaaacactcacttgttataga |
4713400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 78 - 224
Target Start/End: Complemental strand, 4854916 - 4854770
Alignment:
| Q |
78 |
cttactatcctcctcactcatctccaactgcaatgcaaactctaaagctccaacaacatcactcattgacattcgttgatttccatcgtcatgcaaacaa |
177 |
Q |
| |
|
|||||||| |||| ||||||| |||| | ||| |||| |||||||| |||||| ||||||||||| ||||| |||||||||||||| ||||||||||| |
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| T |
4854916 |
cttactattctccccactcataaccaatttcaacgcaagctctaaagttccaaccacatcactcatagacatccgttgatttccatcaccatgcaaacaa |
4854817 |
T |
|
| Q |
178 |
cttaaaaccatttgacaataacatttcaaacactcacttgttataga |
224 |
Q |
| |
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|| || ||||||||||||||| ||||||||||||||||||||||||| |
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| T |
4854816 |
ctcaacaccatttgacaataaaatttcaaacactcacttgttataga |
4854770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 88 - 182
Target Start/End: Original strand, 4642350 - 4642444
Alignment:
| Q |
88 |
tcctcactcatctccaactgcaatgcaaactctaaagctccaacaacatcactcattgacattcgttgatttccatcgtcatgcaaacaacttaa |
182 |
Q |
| |
|
|||||||||| | |||| ||||| |||||||||||| | ||||| || | ||||||||| ||||||| ||||||| ||||||||||||||||| |
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| T |
4642350 |
tcctcactcaccaccaattgcaacgcaaactctaaacccccaaccacttgactcattgagggtcgttgaattccatcatcatgcaaacaacttaa |
4642444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 88 - 182
Target Start/End: Original strand, 4635503 - 4635597
Alignment:
| Q |
88 |
tcctcactcatctccaactgcaatgcaaactctaaagctccaacaacatcactcattgacattcgttgatttccatcgtcatgcaaacaacttaa |
182 |
Q |
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|
|||||||||| | | || ||||| |||||||||||| | ||||| || | ||||||||| ||||||| ||||||| ||||||||||||||||| |
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| T |
4635503 |
tcctcactcaccactaattgcaacgcaaactctaaacccccaaccacttgactcattgagggtcgttgaattccatcatcatgcaaacaacttaa |
4635597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 182
Target Start/End: Original strand, 4629568 - 4629649
Alignment:
| Q |
101 |
ccaactgcaatgcaaactctaaagctccaacaacatcactcattgacattcgttgatttccatcgtcatgcaaacaacttaa |
182 |
Q |
| |
|
|||| |||||||||||||||||| | ||||| || | ||||||||| ||||||| | ||||| |||||||| |||||||| |
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| T |
4629568 |
ccaattgcaatgcaaactctaaacccccaaccacttgactcattgagggtcgttgagtcccatcatcatgcaagcaacttaa |
4629649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 182
Target Start/End: Original strand, 4660448 - 4660541
Alignment:
| Q |
89 |
cctcactcatctccaactgcaatgcaaactctaaagctccaacaacatcactcattgacattcgttgatttccatcgtcatgcaaacaacttaa |
182 |
Q |
| |
|
||||||||| | |||| ||||| ||||||||||| | ||||| || | ||||||||| ||||||| | ||||| ||||||||||||||||| |
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| T |
4660448 |
cctcactcaccaccaattgcaacacaaactctaaacccccaaccacttgactcattgaaggtcgttgagtcccatcatcatgcaaacaacttaa |
4660541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 182
Target Start/End: Original strand, 4665594 - 4665675
Alignment:
| Q |
101 |
ccaactgcaatgcaaactctaaagctccaacaacatcactcattgacattcgttgatttccatcgtcatgcaaacaacttaa |
182 |
Q |
| |
|
|||| |||||||||||||||||| | ||||| || | ||||||||| ||||||| | ||||| |||||||| |||||||| |
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| T |
4665594 |
ccaattgcaatgcaaactctaaacccccaaccacttgactcattgagggtcgttgagtcccatcatcatgcaagcaacttaa |
4665675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 179
Target Start/End: Original strand, 4671280 - 4671377
Alignment:
| Q |
82 |
ctatcctcctcactcatctccaactgcaatgcaaactctaaagctccaacaacatcactcattgacattcgttgatttccatcgtcatgcaaacaact |
179 |
Q |
| |
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||||| |||||||||| | |||| ||||| ||||||||||| | ||||| || | ||||||||| ||||||| ||||||| |||||||| ||||| |
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| T |
4671280 |
ctatcttcctcactcaccaccaattgcaacacaaactctaaacccccaaccacttgactcattgagggtcgttgagttccatcatcatgcaagcaact |
4671377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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