View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13066_low_1 (Length: 964)

Name: NF13066_low_1
Description: NF13066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13066_low_1
NF13066_low_1
[»] chr4 (3 HSPs)
chr4 (1-964)||(53561568-53562539)
chr4 (107-409)||(38185268-38185570)
chr4 (107-423)||(34821223-34821540)
[»] chr8 (4 HSPs)
chr8 (107-421)||(4903679-4903993)
chr8 (129-409)||(1557167-1557447)
chr8 (865-913)||(4903175-4903223)
chr8 (654-713)||(4903376-4903435)
[»] chr7 (4 HSPs)
chr7 (107-421)||(22153564-22153878)
chr7 (107-421)||(22209479-22209793)
chr7 (864-962)||(22154312-22154410)
chr7 (864-962)||(22210227-22210325)


Alignment Details
Target: chr4 (Bit Score: 848; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 848; E-Value: 0
Query Start/End: Original strand, 1 - 964
Target Start/End: Complemental strand, 53562539 - 53561568
Alignment:
Q  1 agagctgctgcaaacagaaaaaccagcagcaccacaacagaactgcacaacctcaatgaacacagccagacaccacgcagcagcagctctcccaaacaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||     
T  53562539 agagctgctgcaaacagaaaaaccagcagcaccacaacagaactgcacagcctcaatgaacacagccagacaccacgcagcagcagctctcccaaacaaa 53562440  T
Q  101 acaacctcaccgcatcaaacagtccttgggattccacgtccactcgtagaacaaaaacgccggcaactttaatcttcccaaactccacctccaagacaaa 200  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53562439 acaacctcaccgcatcaaacagtccttgggattccacttccactcgtagaacaaaaacgccggcaactttaatcttcccaaactccacctccaagacaaa 53562340  T
Q  201 accttgacagattccaacagatcctcaacctcaataacagcattattgaaaattctgtcgttcctcgctttccatatactccaaataacagcatgccaaa 300  Q
    |||||||| |    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53562339 accttgactg----caacagatcctcaacctcaataacagcattattgaaaattctgtcgttcctcgctttccatatactccaaataacagcatgccaaa 53562244  T
Q  301 taattccaacacctttacggatcttattatttaaaacagctccattccaacattcccacaaaataaaaagattcggtggaattataaaattaaagtccaa 400  Q
    |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53562243 taattctaacacctttacgggtcttattatttaaaacagctccattccaacattcccacaaaataaaaagattcggtggaattataaaattaaagtccaa 53562144  T
Q  401 ccattccatgatcttacaccaaaccaccttcaccccttcacaatgaagaaataaatgagtagcatcttcagccgcgttatt----------cactcataa 490  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||          |||||||||    
T  53562143 ccattccatgatcttacaccaaaccaccttcaccccttcacaatgaagaaataaatgagtagcatcttcagccgtgttattacaccacacacactcataa 53562044  T
Q  491 gatgtatccggcgggaaacaattcctaatagctagattaatctttgtaggaattctatcatagaggagtttccacgagaagacaacgaccttggtcg-cg 589  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| || ||    
T  53562043 gatgtatccggtgggaaacaattcctaatagctagattaatcttcgtaggaattctatcatggaggagtttccacgagaagacaacgaccttggacggcg 53561944  T
Q  590 ccggactcttccaaatatgcttaaacaccctcctctctagttcatgaaggctctcttccctcaccatcaatgtttccaatttggaatacatagatttaac 689  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53561943 ccggactcttccaaatatgcttaaacaccctcctctctagttcatcaaggctctcttccctcaccatcaatgtttccaatttggaatacatagatttaac 53561844  T
Q  690 cgaaaaagtaccgtcctcttccaaacaccaacgccattcgtcttcaacatccgaaaacacaaaaccattcaaatcctccaacattgcatcaacaagatcc 789  Q
    |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53561843 cgaaaaagtaccgtcctcttccaaactccaacgccaatcgtcttcaacatccgaaaacacaaaaccattcaaatcctccaacattgcatcaacaagatcc 53561744  T
Q  790 tcctcccacac-aaaagatcccttctccaactaaaatcccaattacctcccaccctgccactcacccgacagtccccaataaaaccctctttttggttag 888  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  53561743 tcctcccacacaaaaagatcccttctccaactaaaatcccaattacctcccaccccgccactcacccgacagtccccaataaaaccctctttttggttag 53561644  T
Q  889 acaaggagaacaatcttggatatttagccggaaaagaactattacccctccacacgtcattccaaaacctcgtaac 964  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53561643 acaaggagaacaatcttggatatttagccggaaaagaactattacccctccacacgtcattccaaaacctcgtaac 53561568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 107 - 409
Target Start/End: Original strand, 38185268 - 38185570
Alignment:
Q  107 tcaccgcatcaaacagtccttgggattccacgtccactcgtagaacaaaaacgccggcaactttaatcttcccaaactccacctccaagacaaaaccttg 206  Q
    |||||||| ||| || ||||| ||||||||  |||||||||| |||||| | |||||||| |||| ||| || |||| ||||||||| | ||| |||||     
T  38185268 tcaccgcaacaagcattccttcggattccaattccactcgtaaaacaaacatgccggcaagtttattctaccaaaacaccacctccaggccaacacctta 38185367  T
Q  207 acagattccaacagatcctcaacctcaataacagcattattgaaaattctgtcgttcctcgctttccatatactccaaataacagcatgccaaataattc 306  Q
    | |||||||| ||   |||||   || |  || |||||||| ||| || | || ||||| ||||||||||| ||||||||  | |||||||||||||  |    
T  38185368 atagattccagcaatgcctcacaatccaacactgcattattaaaagttatatcattcctagctttccatatgctccaaatggcggcatgccaaataagcc 38185467  T
Q  307 caacacctttacggatcttattatttaaaacagctccattccaacattcccacaaaataaaaagattcggtggaattataaaattaaagtccaaccattc 406  Q
      || || ||||  ||||| |||||  |||| |||| ||||||||||||||||   ||||| ||||||||||||||||||||||| || |||| ||| ||    
T  38185468 tcactcccttacaaatctttttattataaaccgctcaattccaacattcccacgtgataaacagattcggtggaattataaaattgaattccagccactc 38185567  T
Q  407 cat 409  Q
    |||    
T  38185568 cat 38185570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 107 - 423
Target Start/End: Original strand, 34821223 - 34821540
Alignment:
Q  107 tcaccgcatcaaacag-tccttgggattccacgtccactcgtagaacaaaaacgccggcaactttaatcttcccaaactccacctccaagacaaaacctt 205  Q
    |||||||||||||||  ||||| ||||||||  |||| ||||| |||||| | | |||||  |  ||||  || |||| |||||||||  ||||||||||    
T  34821223 tcaccgcatcaaacaaatcctttggattccagctccattcgtaaaacaaacaagacggcacatccaatcgacctaaacaccacctccaccacaaaacctt 34821322  T
Q  206 gacagattccaacagatcctcaacctcaataacagcattattgaaaattctgtcgttcctcgctttccatatactccaaataacagcatgccaaataatt 305  Q
     |  |||||||||||  ||||||  || | ||||||||| || |||||  | || ||||||||||||||||| ||||||||  | || ||||||||||      
T  34821323 tattgattccaacagtgcctcaaaatctaaaacagcattgttaaaaataatatcattcctcgctttccatatgctccaaatcgcggcgtgccaaataagc 34821422  T
Q  306 ccaacacctttacggatcttattatttaaaacagctccattccaacattcccacaaaataaaaagattcggtggaattataaaattaaagtccaaccatt 405  Q
    |  || || ||||| ||||| |||||   ||| || ||||||||||| | |||||  ||||| | |||||| || ||||||| ||||| ||| ||||| |    
T  34821423 ctcactcccttacgaatctttttattgtgaaccgcaccattccaacaattccacatgataaacaaattcggagggattataatattaatgtctaaccact 34821522  T
Q  406 ccatgatcttacaccaaa 423  Q
    |||||| ||||| |||||    
T  34821523 ccatgagcttactccaaa 34821540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 2e-36; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 107 - 421
Target Start/End: Complemental strand, 4903993 - 4903679
Alignment:
Q  107 tcaccgcatcaaacagtccttgggattccacgtccactcgtagaacaaaaacgccggcaactttaatcttcccaaactccacctccaagacaaaaccttg 206  Q
    |||||||| |||||| |||||  |||||||  ||||||| || |||||||||||   | | || || || ||||||  ||| ||||||||||| |||||     
T  4903993 tcaccgcaacaaacaatccttcagattccaattccactcataaaacaaaaacgcgtacgaattcaacctacccaaaaaccatctccaagacaacacctta 4903894  T
Q  207 acagattccaacagatcctcaacctcaataacagcattattgaaaattctgtcgttcctcgctttccatatactccaaataacagcatgccaaataattc 306  Q
    |||||||||||||| ||||| || ||  | ||| |||| |||||||||||||| |||||||||||||| |||||||||||  ||||||||||||| | ||    
T  4903893 acagattccaacagctcctccacatctgtcacaacattgttgaaaattctgtcattcctcgctttccaaatactccaaattgcagcatgccaaattaatc 4903794  T
Q  307 caacacctttacggatcttattatttaaaacagctccattccaacattcccacaaaataaaaagattcggtggaattataaaattaaagtccaaccattc 406  Q
     | ||||  | || | ||| || || ||||   | ||||||||||||| ||||| |||||| ||||| || ||||||| ||||||||| |||||||| ||    
T  4903793 taccacccctgcgcagctttttgttcaaaaactcaccattccaacattgccacataataaacagattaggaggaattaaaaaattaaattccaaccactc 4903694  T
Q  407 catgatcttacacca 421  Q
    ||| | |||||||||    
T  4903693 cataagcttacacca 4903679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 129 - 409
Target Start/End: Complemental strand, 1557447 - 1557167
Alignment:
Q  129 ggattccacgtccactcgtagaacaaaaacgccggcaactttaatcttcccaaactccacctccaagacaaaaccttgacagattccaacagatcctcaa 228  Q
    ||||||||  |||| ||||| |||||| | || |||||  | ||||| ||||||| ||||||||| ||||| ||||| |  |||||||| ||| | ||||    
T  1557447 ggattccaattccattcgtaaaacaaacaagctggcaagctcaatctacccaaacaccacctccacgacaataccttaattgattccaagagagcttcaa 1557348  T
Q  229 cctcaataacagcattattgaaaattctgtcgttcctcgctttccatatactccaaataacagcatgccaaataattccaacacctttacggatcttatt 328  Q
      || | |   ||||||||||| |   |||| ||||| |||||||| ||  |||||||    |||||||||||||  |  ||||| || || ||||| ||    
T  1557347 ggtctaaagtcgcattattgaacacaatgtcattccttgctttccaaatgttccaaatggtggcatgccaaataagcctcacacccttccgaatcttttt 1557248  T
Q  329 atttaaaacagctccattccaacattcccacaaaataaaaagattcggtggaattataaaattaaagtccaaccattccat 409  Q
    ||| | |||||||||| ||||||||||||||| |||||| ||||| || || |||| |||||||||||||| ||| |||||    
T  1557247 attgacaacagctccaatccaacattcccacataataaacagatttggggggattaaaaaattaaagtccagccagtccat 1557167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 865 - 913
Target Start/End: Complemental strand, 4903223 - 4903175
Alignment:
Q  865 caataaaaccctctttttggttagacaaggagaacaatcttggatattt 913  Q
    |||||||| ||||||| || |||||||||||||||||||||||||||||    
T  4903223 caataaaagcctctttctgattagacaaggagaacaatcttggatattt 4903175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 654 - 713
Target Start/End: Complemental strand, 4903435 - 4903376
Alignment:
Q  654 catcaatgtttccaatttggaatacatagatttaaccgaaaaagtaccgtcctcttccaa 713  Q
    |||||||||||||||||| |||||||| ||||| |||||||||| ||| ||||| |||||    
T  4903435 catcaatgtttccaatttagaatacattgattttaccgaaaaagcaccttcctcatccaa 4903376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 2e-17; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 107 - 421
Target Start/End: Original strand, 22153564 - 22153878
Alignment:
Q  107 tcaccgcatcaaacagtccttgggattccacgtccactcgtagaacaaaaacgccggcaactttaatcttcccaaactccacctccaagacaaaaccttg 206  Q
    |||||||| ||||||  |||| ||||||||  ||||||| || |||||| ||||  || | || || || ||||||   |||||||||||||| |||||     
T  22153564 tcaccgcaacaaacaaaccttcggattccaattccactcataaaacaaacacgcgtgcgaattcaacctacccaaaaatcacctccaagacaacacctta 22153663  T
Q  207 acagattccaacagatcctcaacctcaataacagcattattgaaaattctgtcgttcctcgctttccatatactccaaataacagcatgccaaataattc 306  Q
    | |||||||||||| | ||| || ||  | |||  ||| ||||||||| |||| |||||||||||||| |||||||||||  | ||||||||||| | ||    
T  22153664 aaagattccaacagcttctccacatctgtcacaatattgttgaaaattatgtcattcctcgctttccaaatactccaaattgcggcatgccaaattaatc 22153763  T
Q  307 caacacctttacggatcttattatttaaaacagctccattccaacattcccacaaaataaaaagattcggtggaattataaaattaaagtccaaccattc 406  Q
     | ||||    || | ||| || || ||||   | |||||||||||||||| || |||||| |||||  | || |||| ||||||||| |||||||| ||    
T  22153764 taccaccccagcgcagctttttgttcaaaaactcaccattccaacattcccgcataataaacagattaagagggattaaaaaattaaattccaaccactc 22153863  T
Q  407 catgatcttacacca 421  Q
    ||| | |||||||||    
T  22153864 cataagcttacacca 22153878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 107 - 421
Target Start/End: Original strand, 22209479 - 22209793
Alignment:
Q  107 tcaccgcatcaaacagtccttgggattccacgtccactcgtagaacaaaaacgccggcaactttaatcttcccaaactccacctccaagacaaaaccttg 206  Q
    |||||||| ||||||  |||| ||||||||  ||||||| || |||||| ||||  || | || || || ||||||   |||||||||||||| |||||     
T  22209479 tcaccgcaacaaacaaaccttcggattccaattccactcataaaacaaacacgcgtgcgaattcaacctacccaaaaatcacctccaagacaacacctta 22209578  T
Q  207 acagattccaacagatcctcaacctcaataacagcattattgaaaattctgtcgttcctcgctttccatatactccaaataacagcatgccaaataattc 306  Q
    | |||||||||||| | ||| || ||  | |||  ||| ||||||||| |||| |||||||||||||| |||||||||||  | ||||||||||| | ||    
T  22209579 aaagattccaacagcttctccacatctgtcacaatattgttgaaaattatgtcattcctcgctttccaaatactccaaattgcggcatgccaaattaatc 22209678  T
Q  307 caacacctttacggatcttattatttaaaacagctccattccaacattcccacaaaataaaaagattcggtggaattataaaattaaagtccaaccattc 406  Q
     | ||||    || | ||| || || ||||   | |||||||||||||||| || |||||| |||||  | || |||| ||||||||| |||||||| ||    
T  22209679 taccaccccagcgcagctttttgttcaaaaactcaccattccaacattcccgcataataaacagattaagagggattaaaaaattaaattccaaccactc 22209778  T
Q  407 catgatcttacacca 421  Q
    ||| | |||||||||    
T  22209779 cataagcttacacca 22209793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 864 - 962
Target Start/End: Original strand, 22154312 - 22154410
Alignment:
Q  864 ccaataaaaccctctttttggttagacaaggagaacaatcttggatatttagccggaaaagaactattacccctccacacgtcattccaaaacctcgta 962  Q
    ||||||||| ||||||| || |||||||||||||||||||||||||||||  ||  ||| |||||||||| | |||| || ||||| ||||| ||||||    
T  22154312 ccaataaaagcctctttctgattagacaaggagaacaatcttggatatttcaccctaaaggaactattacacatccaaacctcatttcaaaagctcgta 22154410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 864 - 962
Target Start/End: Original strand, 22210227 - 22210325
Alignment:
Q  864 ccaataaaaccctctttttggttagacaaggagaacaatcttggatatttagccggaaaagaactattacccctccacacgtcattccaaaacctcgta 962  Q
    ||||||||| ||||||| || |||||||||||||||||||||||||||||  ||  ||| |||||||||| | |||| || ||||| ||||| ||||||    
T  22210227 ccaataaaagcctctttctgattagacaaggagaacaatcttggatatttcaccctaaaggaactattacacatccaaacctcatttcaaaagctcgta 22210325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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