View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13066_low_2 (Length: 410)
Name: NF13066_low_2
Description: NF13066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13066_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 90 - 394
Target Start/End: Original strand, 40517983 - 40518287
Alignment:
| Q |
90 |
taattgccttgcctttatcatccgcagccaatgaattaattcctccttaatactataatttacgaaataggatatgctctcctgcatctataaatactaa |
189 |
Q |
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| T |
40517983 |
taattgccttgcctttatcatccgcagccaatgaattaattcctccttaatactataatttacgaaataggatatgctctcttgcatctataaatactaa |
40518082 |
T |
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| Q |
190 |
tatctcgagttggatagagttataatataccatgaaaaattcctctcacgactagtagttaaatctggttccataactagttaaaatagatgagacccga |
289 |
Q |
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| T |
40518083 |
tatctcgagttggatagagttataatatacgatgaaaaattcctctcacgactagtagttaaatctggttccataactagttaaaatagatgagacccga |
40518182 |
T |
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| Q |
290 |
actatcttatacaattgaaaattaaataatctaacgtgcgcatatatattgatgataatatgccaggatcatcccatgtccgtaatttctcccttgctag |
389 |
Q |
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| T |
40518183 |
actatcttatacaattgaaaattaaataatctaatgtgcgcatatatattgatgataatatgccaggatcatcccatgtccgtaatttttcccttgctag |
40518282 |
T |
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| Q |
390 |
tttga |
394 |
Q |
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||||| |
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| T |
40518283 |
tttga |
40518287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 17 - 99
Target Start/End: Original strand, 40517343 - 40517425
Alignment:
| Q |
17 |
catcatgggtgtaattgcgagagcatatatgtaattaattccgagagcatatcataaacgttgacaccatatataattgcctt |
99 |
Q |
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|||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40517343 |
catcatgggtgtaattgcgagatcatatatttaattaattccgagagcatatcataaacgttgacaccatatataattgcctt |
40517425 |
T |
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