View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13067_high_13 (Length: 347)
Name: NF13067_high_13
Description: NF13067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13067_high_13 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 10 - 328
Target Start/End: Original strand, 43220231 - 43220549
Alignment:
| Q |
10 |
aagaatatgatcttttatgcactggtttcatctgtttgtcttcttcaagggaaatcatccccaagtgtgagggatcctccagcatcattttagaaaccag |
109 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |
|
|
| T |
43220231 |
aagaagatgatcttttatgcactggtttcatctgtttgtcttcttcaagggaaatcatccccaggtgtgagggatcctccagcatcatcttagaaaccag |
43220330 |
T |
|
| Q |
110 |
ataacctgcaatagaccatgtttggtattttcttgcttttctaccaacatatcttccaagcttaccatcataatattcaggccatccatcctccagcaaa |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43220331 |
ataacctgcaatagaccatgtttggtattttcttgcttttctaccaacatatcttccaagcttaccatcataatattcaggccatccatcctccagcaaa |
43220430 |
T |
|
| Q |
210 |
cgactctcagcaagttcgattgcacgtcttgctatttgcggacgtcctgtcttgatgcaagcagctgttactagccacatgagcactgcactcaagagca |
309 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43220431 |
cgactctcagcaagttcaattgcacgtcttgctatttgcggacgtcctgtcttgatgcaagcagctgttactagccacatgagcactgcactcaagagca |
43220530 |
T |
|
| Q |
310 |
agaaacaaaatgagaagta |
328 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
43220531 |
agaaacaaaatgagaagta |
43220549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 10 - 327
Target Start/End: Original strand, 43229305 - 43229622
Alignment:
| Q |
10 |
aagaatatgatcttttatgcactggtttcatctgtttgtcttcttcaagggaaatcatccccaagtgtgagggatcctccagcatcattttagaaaccag |
109 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| || | |||| |
|
|
| T |
43229305 |
aagaagatgatcttttaatcactggtttcatctgcttgtcttcttcaagggaaatcatccccaagtgtgaggggtcctccagcatcatctttgccaccaa |
43229404 |
T |
|
| Q |
110 |
ataacctgcaatagaccatgtttggtattttcttgcttttctaccaacatatcttccaagcttaccatcataatattcaggccatccatcctccagcaaa |
209 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| | | | ||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||| |
|
|
| T |
43229405 |
ataacccgcaatagaccatgtttggtattttcttgcctgtttcccaacatatcttccaagtttaccatcataatattcaggccatccatccttcagtaaa |
43229504 |
T |
|
| Q |
210 |
cgactctcagcaagttcgattgcacgtcttgctatttgcggacgtcctgtcttgatgcaagcagctgttactagccacatgagcactgcactcaagagca |
309 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||| || || |||||||||||||||||||||||||| ||||||| ||| ||||| |||||||||| |
|
|
| T |
43229505 |
cgactctcggcaagttcaattgcacgtcttgctatttgtggtcgccctgtcttgatgcaagcagctgttacaagccacaggagtactgcgctcaagagca |
43229604 |
T |
|
| Q |
310 |
agaaacaaaatgagaagt |
327 |
Q |
| |
|
|||||||||||| |||| |
|
|
| T |
43229605 |
tgaaacaaaatgaaaagt |
43229622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University