View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13067_high_23 (Length: 270)

Name: NF13067_high_23
Description: NF13067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13067_high_23
NF13067_high_23
[»] chr8 (3 HSPs)
chr8 (14-270)||(27565621-27565877)
chr8 (121-172)||(44132903-44132954)
chr8 (119-172)||(20896217-20896270)
[»] chr6 (3 HSPs)
chr6 (132-198)||(28067333-28067399)
chr6 (113-172)||(24226058-24226119)
chr6 (114-175)||(6793495-6793558)
[»] chr5 (2 HSPs)
chr5 (112-177)||(3622227-3622294)
chr5 (132-175)||(9956628-9956671)
[»] chr2 (1 HSPs)
chr2 (114-175)||(1208617-1208680)
[»] chr4 (4 HSPs)
chr4 (121-172)||(50041844-50041895)
chr4 (121-172)||(50049066-50049117)
chr4 (112-175)||(36498626-36498691)
chr4 (132-170)||(53363704-53363742)
[»] chr1 (2 HSPs)
chr1 (87-175)||(49315761-49315851)
chr1 (116-172)||(19431420-19431476)
[»] chr3 (1 HSPs)
chr3 (148-206)||(40902292-40902350)
[»] chr7 (1 HSPs)
chr7 (140-200)||(40639206-40639267)


Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 14 - 270
Target Start/End: Complemental strand, 27565877 - 27565621
Alignment:
Q  14 agatttatagagggaaactatatatgtagtcttttttaaaatttgtagctaatgacgagagaattaaagattccacttgggtgctttcgagtttagttac 113  Q
    ||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||    
T  27565877 agatttatagaaggaaactatatatatagtcttttttataatttgtagctaatgacaagagaattaaagatttcacttgggtgccttcgagtttagttac 27565778  T
Q  114 tttgtctctatttctctcaaccaattattctatctcatcaatataatttattttaatcactcgttgatcaattaaatacactaaaatcatcaaagtcaca 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27565777 tttgtctctatttctctcaaccaattattctatctcatcaatataatttattttaatcactcgttgatcaattaaatacactaaaatcatcaaagtcaca 27565678  T
Q  214 aattcaaaatcaccaaagtattttcaaagaattagagagtatcatttttctcatcat 270  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  27565677 aattcaaaatcaccaaagtattttcaaagaattagagagtataatttttctcatcat 27565621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 121 - 172
Target Start/End: Complemental strand, 44132954 - 44132903
Alignment:
Q  121 ctatttctctcaaccaattattctatctcatcaatataatttattttaatca 172  Q
    |||| ||||| ||||||| ||||| ||||||||| |||||||||||||||||    
T  44132954 ctatctctcttaaccaataattctctctcatcaaaataatttattttaatca 44132903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 119 - 172
Target Start/End: Complemental strand, 20896270 - 20896217
Alignment:
Q  119 ctctatttctctcaaccaattattctatctcatcaatataatttattttaatca 172  Q
    |||||||||||| || |||| ||||| ||||||| | |||||||||||||||||    
T  20896270 ctctatttctcttaatcaatcattctctctcatctaaataatttattttaatca 20896217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 198
Target Start/End: Original strand, 28067333 - 28067399
Alignment:
Q  132 aaccaattattctatctcatcaatataatttattttaatcactcgttgatcaattaaatacactaaa 198  Q
    ||||||| ||||| ||||||||| ||||||||||||||||| || |   ||||||||||||||||||    
T  28067333 aaccaatcattctctctcatcaaaataatttattttaatcattcatctgtcaattaaatacactaaa 28067399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 172
Target Start/End: Original strand, 24226058 - 24226119
Alignment:
Q  113 ctttgtctctatttctctc--aaccaattattctatctcatcaatataatttattttaatca 172  Q
    |||||||| ||||||||||  ||||||| ||||| | ||||||| |||||||||||||||||    
T  24226058 ctttgtctttatttctctcctaaccaataattctctgtcatcaaaataatttattttaatca 24226119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 175
Target Start/End: Original strand, 6793495 - 6793558
Alignment:
Q  114 tttgtctctatttctctc--aaccaattattctatctcatcaatataatttattttaatcactc 175  Q
    ||||||||||| ||| ||  ||||||| ||| | ||||||||| ||||||||||||||||||||    
T  6793495 tttgtctctatctctatcctaaccaataattatctctcatcaaaataatttattttaatcactc 6793558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 177
Target Start/End: Complemental strand, 3622294 - 3622227
Alignment:
Q  112 actttgtctctatttctctc--aaccaattattctatctcatcaatataatttattttaatcactcgt 177  Q
    ||||||||||||| |||||   ||||||| ||| | ||||||||| ||||||||||||||||||||||    
T  3622294 actttgtctctatctctcttctaaccaataattttctctcatcaaaataatttattttaatcactcgt 3622227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 132 - 175
Target Start/End: Original strand, 9956628 - 9956671
Alignment:
Q  132 aaccaattattctatctcatcaatataatttattttaatcactc 175  Q
    ||||||| ||||| ||||||||| ||||||||||||||||||||    
T  9956628 aaccaataattctctctcatcaaaataatttattttaatcactc 9956671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 175
Target Start/End: Original strand, 1208617 - 1208680
Alignment:
Q  114 tttgtctctatttctctc--aaccaattattctatctcatcaatataatttattttaatcactc 175  Q
    ||||||||||| ||||||  ||||||| ||||| |||||| || ||||||||||||||||||||    
T  1208617 tttgtctctatctctctcttaaccaataattctctctcattaaaataatttattttaatcactc 1208680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 121 - 172
Target Start/End: Complemental strand, 50041895 - 50041844
Alignment:
Q  121 ctatttctctcaaccaattattctatctcatcaatataatttattttaatca 172  Q
    |||| ||||| ||||||| ||||| ||||||||| |||||||||||||||||    
T  50041895 ctatctctcttaaccaataattctctctcatcaaaataatttattttaatca 50041844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 121 - 172
Target Start/End: Complemental strand, 50049117 - 50049066
Alignment:
Q  121 ctatttctctcaaccaattattctatctcatcaatataatttattttaatca 172  Q
    |||| ||||| ||||||| ||||| ||||||||| |||||||||||||||||    
T  50049117 ctatctctcttaaccaataattctctctcatcaaaataatttattttaatca 50049066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 175
Target Start/End: Complemental strand, 36498691 - 36498626
Alignment:
Q  112 actttgtctctatttctctc--aaccaattattctatctcatcaatataatttattttaatcactc 175  Q
    ||||||||||||| |||||   ||||||| ||||| || |||||| ||||||||||||||||||||    
T  36498691 actttgtctctatctctcttctaaccaataattctctcacatcaaaataatttattttaatcactc 36498626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 170
Target Start/End: Complemental strand, 53363742 - 53363704
Alignment:
Q  132 aaccaattattctatctcatcaatataatttattttaat 170  Q
    ||||||||||||| ||||||||| |||||||||||||||    
T  53363742 aaccaattattctttctcatcaaaataatttattttaat 53363704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 87 - 175
Target Start/End: Complemental strand, 49315851 - 49315761
Alignment:
Q  87 cacttgggtgctttcgagtttagttactttgtctctatttctctca--accaattattctatctcatcaatataatttattttaatcactc 175  Q
    |||||| ||| ||| |||||  || ||||||||||||| |||||||  | |||| ||| ||| ||||||| ||||||||||||||||||||    
T  49315851 cacttgagtgattttgagttcggtgactttgtctctatctctctcataatcaataattatatttcatcaaaataatttattttaatcactc 49315761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 172
Target Start/End: Complemental strand, 19431476 - 19431420
Alignment:
Q  116 tgtctctatttctctcaaccaattattctatctcatcaatataatttattttaatca 172  Q
    ||||| ||| ||||| ||||||| ||||| ||||||| | |||||||||||||||||    
T  19431476 tgtctatatctctcttaaccaatcattctctctcatctaaataatttattttaatca 19431420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 206
Target Start/End: Complemental strand, 40902350 - 40902292
Alignment:
Q  148 tcatcaatataatttattttaatcactcgttgatcaattaaatacactaaaatcatcaa 206  Q
    ||||||||||||||||||||||||| || |  ||| |||||||||| |||| |||||||    
T  40902350 tcatcaatataatttattttaatcattcatctatcgattaaatacattaaagtcatcaa 40902292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 140 - 200
Target Start/End: Complemental strand, 40639267 - 40639206
Alignment:
Q  140 attctatctcatcaatataa-tttattttaatcactcgttgatcaattaaatacactaaaat 200  Q
    ||||||||| ||||| |||| ||||||||||| | || || |||||||||||||||||||||    
T  40639267 attctatcttatcaaaataaatttattttaatgattctttaatcaattaaatacactaaaat 40639206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University