View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13067_high_6 (Length: 480)

Name: NF13067_high_6
Description: NF13067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13067_high_6
NF13067_high_6
[»] chr2 (16 HSPs)
chr2 (8-461)||(40879466-40879911)
chr2 (39-220)||(7586400-7586581)
chr2 (31-221)||(31205799-31205990)
chr2 (39-220)||(8854088-8854269)
chr2 (39-220)||(9073783-9073964)
chr2 (39-220)||(30820480-30820661)
chr2 (39-220)||(12856968-12857149)
chr2 (48-221)||(31186083-31186255)
chr2 (134-221)||(4278258-4278343)
chr2 (39-90)||(8853926-8853977)
chr2 (39-90)||(12856888-12856939)
chr2 (107-148)||(6333067-6333108)
chr2 (41-90)||(9073993-9074042)
chr2 (36-90)||(7586569-7586625)
chr2 (36-90)||(9073952-9074008)
chr2 (36-90)||(30820649-30820705)
[»] chr8 (7 HSPs)
chr8 (1-220)||(30530474-30530693)
chr8 (31-220)||(27359156-27359345)
chr8 (31-220)||(27368513-27368702)
chr8 (31-220)||(17743675-17743864)
chr8 (39-220)||(15055638-15055819)
chr8 (39-220)||(1956150-1956331)
chr8 (58-90)||(15055452-15055484)
[»] chr4 (23 HSPs)
chr4 (1-195)||(34435401-34435595)
chr4 (40-218)||(33606095-33606273)
chr4 (39-220)||(16172718-16172899)
chr4 (39-220)||(8993777-8993958)
chr4 (39-220)||(13112555-13112736)
chr4 (39-220)||(3616115-3616296)
chr4 (1-220)||(53182276-53182480)
chr4 (39-220)||(46915340-46915521)
chr4 (39-201)||(3531145-3531307)
chr4 (39-220)||(2213146-2213326)
chr4 (72-221)||(36657582-36657730)
chr4 (97-220)||(28446348-28446471)
chr4 (16-90)||(33606032-33606106)
chr4 (8-60)||(36657557-36657609)
chr4 (39-90)||(2213437-2213488)
chr4 (39-90)||(46915632-46915683)
chr4 (39-90)||(3531336-3531387)
chr4 (39-90)||(16173055-16173106)
chr4 (39-90)||(16173094-16173145)
chr4 (36-90)||(3531295-3531351)
chr4 (36-90)||(3531457-3531513)
chr4 (36-90)||(8993733-8993789)
chr4 (36-90)||(13112511-13112567)
[»] scaffold1240 (1 HSPs)
scaffold1240 (1-221)||(557-777)
[»] chr3 (39 HSPs)
chr3 (1-220)||(33750634-33750855)
chr3 (1-221)||(50019070-50019290)
chr3 (1-221)||(26157948-26158168)
chr3 (39-220)||(30416327-30416508)
chr3 (39-220)||(42563001-42563182)
chr3 (39-220)||(10425523-10425704)
chr3 (39-220)||(17468505-17468686)
chr3 (39-220)||(25788571-25788752)
chr3 (39-220)||(42599226-42599407)
chr3 (39-220)||(47146362-47146543)
chr3 (39-220)||(25830528-25830709)
chr3 (1-141)||(33188901-33189041)
chr3 (39-201)||(6046218-6046380)
chr3 (53-196)||(21227202-21227345)
chr3 (39-119)||(51429021-51429100)
chr3 (39-90)||(25788781-25788832)
chr3 (39-90)||(25788928-25788979)
chr3 (39-90)||(25830738-25830789)
chr3 (39-90)||(25830885-25830936)
chr3 (39-90)||(47146036-47146087)
chr3 (39-90)||(47146202-47146253)
chr3 (39-99)||(42599585-42599645)
chr3 (39-90)||(42562769-42562820)
chr3 (39-90)||(42599436-42599487)
chr3 (39-90)||(42599475-42599526)
chr3 (39-90)||(47146323-47146374)
chr3 (40-220)||(21230393-21230574)
chr3 (36-88)||(42562805-42562857)
chr3 (39-90)||(6046450-6046501)
chr3 (39-90)||(6046612-6046663)
chr3 (39-90)||(6046733-6046784)
chr3 (39-90)||(42599555-42599606)
chr3 (36-90)||(17468461-17468517)
chr3 (36-90)||(30416496-30416552)
chr3 (293-410)||(32240660-32240779)
chr3 (36-90)||(42599395-42599451)
chr3 (36-90)||(42599514-42599570)
chr3 (107-148)||(53722743-53722784)
chr3 (36-89)||(10425816-10425871)
[»] chr1 (25 HSPs)
chr1 (8-221)||(47298395-47298608)
chr1 (1-221)||(33166258-33166478)
chr1 (1-221)||(38837535-38837752)
chr1 (1-221)||(17785317-17785537)
chr1 (1-221)||(17677157-17677378)
chr1 (48-220)||(51522343-51522515)
chr1 (33-220)||(8470333-8470520)
chr1 (39-220)||(48406419-48406600)
chr1 (39-220)||(48386046-48386227)
chr1 (50-221)||(18318635-18318805)
chr1 (39-220)||(2475990-2476171)
chr1 (39-220)||(31470277-31470458)
chr1 (39-220)||(45241129-45241310)
chr1 (39-90)||(8470261-8470312)
chr1 (33-90)||(8470294-8470351)
chr1 (39-90)||(31469996-31470047)
chr1 (39-90)||(31470158-31470209)
chr1 (39-90)||(31470197-31470248)
chr1 (384-431)||(40037027-40037074)
chr1 (31-76)||(51522304-51522349)
chr1 (36-90)||(31470114-31470170)
chr1 (36-90)||(31470233-31470289)
chr1 (36-90)||(45241085-45241141)
chr1 (36-90)||(48386215-48386271)
chr1 (36-90)||(48386256-48386312)
[»] chr7 (15 HSPs)
chr7 (39-220)||(22658938-22659119)
chr7 (36-221)||(32128091-32128276)
chr7 (40-221)||(26814175-26814356)
chr7 (39-220)||(36520521-36520702)
chr7 (39-220)||(22193305-22193486)
chr7 (1-90)||(26814097-26814186)
chr7 (1-90)||(32128300-32128389)
chr7 (39-90)||(22193078-22193129)
chr7 (39-90)||(22193225-22193276)
chr7 (46-90)||(22658622-22658666)
chr7 (39-90)||(22658573-22658624)
chr7 (39-90)||(22658654-22658705)
chr7 (39-90)||(22658693-22658744)
chr7 (38-90)||(22658731-22658783)
chr7 (39-99)||(32128252-32128312)
[»] chr6 (21 HSPs)
chr6 (40-220)||(18641297-18641477)
chr6 (71-220)||(8221233-8221382)
chr6 (39-220)||(34840500-34840681)
chr6 (39-221)||(24917448-24917630)
chr6 (39-220)||(17959161-17959342)
chr6 (39-220)||(633759-633940)
chr6 (39-220)||(6378293-6378474)
chr6 (118-214)||(24114211-24114307)
chr6 (1-90)||(24917618-24917707)
chr6 (39-99)||(8220864-8220924)
chr6 (16-99)||(18641234-18641317)
chr6 (33-90)||(8220897-8220954)
chr6 (33-90)||(8220936-8220993)
chr6 (39-90)||(633385-633436)
chr6 (39-90)||(633532-633583)
chr6 (39-90)||(633679-633730)
chr6 (39-90)||(6378503-6378554)
chr6 (39-90)||(6378650-6378701)
chr6 (39-90)||(8221148-8221199)
chr6 (40-99)||(24114148-24114207)
chr6 (36-90)||(17959330-17959386)
[»] chr5 (14 HSPs)
chr5 (39-220)||(29617392-29617573)
chr5 (39-220)||(30646727-30646908)
chr5 (39-220)||(4579098-4579279)
chr5 (39-220)||(32974221-32974402)
chr5 (39-220)||(40890816-40890997)
chr5 (39-220)||(27944645-27944826)
chr5 (39-90)||(27406303-27406354)
chr5 (39-88)||(4578977-4579026)
chr5 (107-148)||(34918157-34918198)
chr5 (39-90)||(27944483-27944534)
chr5 (39-79)||(27406275-27406315)
chr5 (43-90)||(29617728-29617775)
chr5 (36-90)||(4579054-4579110)
chr5 (37-90)||(4578934-4578989)
[»] scaffold0004 (3 HSPs)
scaffold0004 (43-221)||(104888-105066)
scaffold0004 (1-90)||(104768-104857)
scaffold0004 (39-99)||(104845-104905)
[»] scaffold0658 (1 HSPs)
scaffold0658 (31-149)||(7019-7136)
[»] scaffold0007 (1 HSPs)
scaffold0007 (40-196)||(167228-167384)


Alignment Details
Target: chr2 (Bit Score: 322; Significance: 0; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 8 - 461
Target Start/End: Complemental strand, 40879911 - 40879466
Alignment:
Q  8 gggactagacaacactagggactatcactgaggactagacaacactgacaattgttaaagcaaacactggggactagacaacatcgacaattttgactga 107  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||  |||||||||||| ||    
T  40879911 gggactagacaacactaaggactatcaccgaggactagacaacactgacaattattaaagcaaacactggggactagacaacactgacaattttgaccga 40879812  T
Q  108 atacaaacaaatatttgattgaaattaatttcaaaacagctcacgctccaactttcccaacaactcttttttccgatcatcgagatgcttttcgaaactt 207  Q
    |  |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||| || | |||||    
T  40879811 a--caaacaaatatttgattgaaattaatttcaaaacagctcacgctccaacttttccaacagctcctttttccgatcatcgagatgctctttggaactt 40879714  T
Q  208 aactttacatacagattgaagaaacaaatctctttcttcaatatgttgtctagtcctttgctgttgtaatatgaannnnnnnnccaagaccaggctgctc 307  Q
    ||||||||||||||||||||||||||||| | |||||||||  |||||||| |||||||||||||||||||||||        |||||||||||||||||    
T  40879713 aactttacatacagattgaagaaacaaatatgtttcttcaaactgttgtcttgtcctttgctgttgtaatatgaa-tttttttccaagaccaggctgctc 40879615  T
Q  308 cacatatattgacatgttaaaagcacaactttttaattgagtataatatacttttcgacctgtttatttatctacctttgatttttcttcttctgttggt 407  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40879614 cacatatattgacatgttaaaagcacaactttttagttgagtataatatacttttcgacctgtttatttatctacctttgatttttcttcttctgttggt 40879515  T
Q  408 tcagcaaaacctttctctgaaatatctccataactaatagagtaactgcagttc 461  Q
    ||||||||||||||||||||||     |||||||||||||||||||||||||||    
T  40879514 tcagcaaaacctttctctgaaa-----ccataactaatagagtaactgcagttc 40879466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 39 - 220
Target Start/End: Complemental strand, 7586581 - 7586400
Alignment:
Q  39 ggactagacaacactgacaattgttaaagcaaacactggggactagacaacatcgacaattttgactgaatacaaacaaatatttgattgaaattaattt 138  Q
    |||||||||||||||||||| | |||||||||||| | ||||||||||||||  || ||| |||||||||||||||||||||||||||| ||||||||||    
T  7586581 ggactagacaacactgacaaatattaaagcaaacagtcgggactagacaacactgataatgttgactgaatacaaacaaatatttgattaaaattaattt 7586482  T
Q  139 caaaacagctcacgctccaactttcccaacaactcttttttccgatcatcgagatgcttttcgaaacttaactttacataca 220  Q
      ||||||||||||||||||||| ||||||| ||| || ||||| ||||||||||||| ||||   |||||||||| |||||    
T  7586481 tcaaacagctcacgctccaacttccccaacagctcattcttccggtcatcgagatgctcttcgtcccttaactttagataca 7586400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 31 - 221
Target Start/End: Complemental strand, 31205990 - 31205799
Alignment:
Q  31 atcactgaggactagacaacactgacaattgttaaagcaaacactggggactagacaa-catcgacaattttgactgaatacaaacaaatatttgattga 129  Q
    ||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||| ||  ||||||| | || ||||||||||||||||||||||||    
T  31205990 atcactgagaactagacaacactaacaattattaaagcaaacactggggactagacaaacactgacaattattaccgaatacaaacaaatatttgattga 31205891  T
Q  130 aattaatttcaaaacagctcacgctccaactttcccaacaactcttttttccgatcatcgagatgcttttcgaaacttaactttacatacag 221  Q
    |||||||||  |||||||||||  ||||| ||| |||||| |||||||||||| ||||||||||  | |||  |||||||| ||||||||||    
T  31205890 aattaattttcaaacagctcacattccaagttttccaacatctcttttttccggtcatcgagatattcttcagaacttaacattacatacag 31205799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 39 - 220
Target Start/End: Original strand, 8854088 - 8854269
Alignment:
Q  39 ggactagacaacactgacaattgttaaagcaaacactggggactagacaacatcgacaattttgactgaatacaaacaaatatttgattgaaattaattt 138  Q
    |||||||||||||||||||||  |||||||||||| | ||||||||||||||  || ||| |||||||||||||||||||||||||||| ||||||||||    
T  8854088 ggactagacaacactgacaatgattaaagcaaacagtcgggactagacaacactgataatgttgactgaatacaaacaaatatttgattaaaattaattt 8854187  T
Q  139 caaaacagctcacgctccaactttcccaacaactcttttttccgatcatcgagatgcttttcgaaacttaactttacataca 220  Q
      |||||||||||||||||||||  |||||| ||| || ||||| ||||||||||||| ||||   |||||||||| |||||    
T  8854188 tcaaacagctcacgctccaacttctccaacagctccttcttccggtcatcgagatgctcttcgtcccttaactttagataca 8854269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 39 - 220
Target Start/End: Complemental strand, 9073964 - 9073783
Alignment:
Q  39 ggactagacaacactgacaattgttaaagcaaacactggggactagacaacatcgacaattttgactgaatacaaacaaatatttgattgaaattaattt 138  Q
    |||||||||||||||||||| | |||||||||||| | ||||||||||||||  || ||| |||||||||||||||||||||||||||| ||||||||||    
T  9073964 ggactagacaacactgacaaatattaaagcaaacagtcgggactagacaacactgataatgttgactgaatacaaacaaatatttgattaaaattaattt 9073865  T
Q  139 caaaacagctcacgctccaactttcccaacaactcttttttccgatcatcgagatgcttttcgaaacttaactttacataca 220  Q
      |||||||||||||||||||||  |||||| ||| || ||||| ||||||||||||| ||||   |||||||||| |||||    
T  9073864 tcaaacagctcacgctccaacttctccaacagctccttcttccggtcatcgagatgctcttcgtcccttaactttagataca 9073783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 39 - 220
Target Start/End: Complemental strand, 30820661 - 30820480
Alignment:
Q  39 ggactagacaacactgacaattgttaaagcaaacactggggactagacaacatcgacaattttgactgaatacaaacaaatatttgattgaaattaattt 138  Q
    |||||||||||||||||||| | |||||||||||| | ||||||||||||||  || ||| |||||||||||||||||||||||||||| ||||||||||    
T  30820661 ggactagacaacactgacaaatattaaagcaaacagtcgggactagacaacactgataatgttgactgaatacaaacaaatatttgattaaaattaattt 30820562  T
Q  139 caaaacagctcacgctccaactttcccaacaactcttttttccgatcatcgagatgcttttcgaaacttaactttacataca 220  Q
      |||||||||||||||||||||  |||||| ||| || ||||| ||||||||||||| ||||   |||||||||| |||||    
T  30820561 tcaaacagctcacgctccaacttctccaacagctccttcttccggtcatcgagatgctcttcgtcccttaactttagataca 30820480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 39 - 220
Target Start/End: Original strand, 12856968 - 12857149
Alignment:
Q  39 ggactagacaacactgacaattgttaaagcaaacactggggactagacaacatcgacaattttgactgaatacaaacaaatatttgattgaaattaattt 138  Q
    |||||||||||||||||||| | |||||||||||| | ||||||||||||||  || ||| |||||||||||||||||||||||||||| ||||||||||    
T  12856968 ggactagacaacactgacaaatattaaagcaaacagtcgggactagacaacactgataatgttgactgaatacaaacaaatatttgattaaaattaattt 12857067  T
Q  139 caaaacagctcacgctccaactttcccaacaactcttttttccgatcatcgagatgcttttcgaaacttaactttacataca 220  Q
      |||||||||||||||||| ||  |||||| ||| || ||||| ||||||||||||| ||||   |||||||||| |||||    
T  12857068 tcaaacagctcacgctccaaattctccaacagctccttcttccggtcatcgagatgctcttcgtcccttaactttagataca 12857149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 48 - 221
Target Start/End: Complemental strand, 31186255 - 31186083
Alignment:
Q  48 aacactgacaattgttaaagcaaacactggggactagacaacatcgacaattttgactgaatacaaacaaatatttgattgaaattaatttcaaaacagc 147  Q
    ||||||||||||| |||||| |||||||||| |||||||||||  ||||||| | || |||||||||||||||||||||||||||||||||  |||||||    
T  31186255 aacactgacaattattaaagaaaacactggg-actagacaacactgacaattattaccgaatacaaacaaatatttgattgaaattaattttcaaacagc 31186157  T
Q  148 tcacgctccaactttcccaacaactcttttttccgatcatcgagatgcttttcgaaacttaactttacatacag 221  Q
    ||||| ||||| ||| |||||| |||||||||||| ||||||||||| | | || |||||||| ||||||||||    
T  31186156 tcacgttccaagttttccaacatctcttttttccggtcatcgagatgttctccggaacttaacattacatacag 31186083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 134 - 221
Target Start/End: Original strand, 4278258 - 4278343
Alignment:
Q  134 aatttcaaaacagctcacgctccaactttcccaacaactcttttttccgatcatcgagatgcttttcgaaacttaactttacatacag 221  Q
    |||||| |||||||||||||||||||| | |||||| || |||||  || ||||||||||||| ||||||||||||||||||||||||    
T  4278258 aatttccaaacagctcacgctccaactcttccaacagctattttt--cggtcatcgagatgctcttcgaaacttaactttacatacag 4278343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 39 - 90
Target Start/End: Original strand, 8853926 - 8853977
Alignment:
Q  39 ggactagacaacactgacaattgttaaagcaaacactggggactagacaaca 90  Q
    |||||||||||||||||||||| |||||| ||||| ||||||||||||||||    
T  8853926 ggactagacaacactgacaattattaaagtaaacattggggactagacaaca 8853977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 39 - 90
Target Start/End: Original strand, 12856888 - 12856939
Alignment:
Q  39 ggactagacaacactgacaattgttaaagcaaacactggggactagacaaca 90  Q
    |||||||||||||||||||||| |||||| ||||| ||||||||||||||||    
T  12856888 ggactagacaacactgacaattattaaagtaaacattggggactagacaaca 12856939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 107 - 148
Target Start/End: Complemental strand, 6333108 - 6333067
Alignment:
Q  107 aatacaaacaaatatttgattgaaattaatttcaaaacagct 148  Q
    |||||| |||||||||||||||||||||||||| ||||||||    
T  6333108 aatacagacaaatatttgattgaaattaatttccaaacagct 6333067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 41 - 90
Target Start/End: Complemental strand, 9074042 - 9073993
Alignment:
Q  41 actagacaacactgacaattgttaaagcaaacactggggactagacaaca 90  Q
    ||||||||||||||| |||| |||||||||||| || |||||||||||||    
T  9074042 actagacaacactgataattattaaagcaaacagtgaggactagacaaca 9073993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 90
Target Start/End: Complemental strand, 7586625 - 7586569
Alignment:
Q  36 tgaggactagacaacact--gacaattgttaaagcaaacactggggactagacaaca 90  Q
    ||||||||||||||||||  || |||| ||||||||||||||  |||||||||||||    
T  7586625 tgaggactagacaacactctgataattattaaagcaaacactacggactagacaaca 7586569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 90
Target Start/End: Complemental strand, 9074008 - 9073952
Alignment:
Q  36 tgaggactagacaacact--gacaattgttaaagcaaacactggggactagacaaca 90  Q
    ||||||||||||||||||  || |||| ||||||||||||||  |||||||||||||    
T  9074008 tgaggactagacaacactctgataattattaaagcaaacactacggactagacaaca 9073952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 90
Target Start/End: Complemental strand, 30820705 - 30820649
Alignment:
Q  36 tgaggactagacaacact--gacaattgttaaagcaaacactggggactagacaaca 90  Q
    ||||||||||||||||||  || |||| ||||||||||||||  |||||||||||||    
T  30820705 tgaggactagacaacactctgataattattaaagcaaacactacggactagacaaca 30820649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 160; Significance: 4e-85; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 30530693 - 30530474
Alignment:
Q  1 gtcacgagggactagacaacactagggactatcactgaggactagacaacactgacaattgttaaagcaaacactggggactagacaacatcgacaattt 100  Q
    |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| || ||||||||||||||  ||||||||    
T  30530693 gtcacggggtactagacaacactagggactatcactgaggactagacaacactgacaattattaaagtaaacgctcgggactagacaacactgacaattt 30530594  T
Q  101 tgactgaatacaaacaaatatttgattgaaattaatttcaaaacagctcacgctccaactttcccaacaactcttttttccgatcatcgagatgcttttc 200  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||||||||||| ||     
T  30530593 tgaccgaatacaaacaaatatttgattgaaattaatttcaaaacagctcacgctccaacttttccaacagctcttttttccggtcatcgagatgctcttt 30530494  T
Q  201 gaaacttaactttacataca 220  Q
    | ||||||||||||||||||    
T  30530493 ggaacttaactttacataca 30530474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 31 - 220
Target Start/End: Original strand, 27359156 - 27359345
Alignment:
Q  31 atcactgaggactagacaacactgacaattgttaaagcaaacactggggactagacaacatcgacaattttgactgaatacaaacaaatatttgattgaa 130  Q
    ||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||  ||||||||||| |||||||||||||||||||||||||    
T  27359156 atcactgaggactagacaacattgacaattattaaagcaaacactggggattagacaacatttacaattttgaccgaatacaaacaaatatttgattgaa 27359255  T
Q  131 attaatttcaaaacagctcacgctccaactttcccaacaactcttttttccgatcatcgagatgcttttcgaaacttaactttacataca 220  Q
    ||||||||| |||||||||||||||||||||| ||||||||||||| || ||  |||||||||||| |||| |||||||||||| |||||    
T  27359256 attaatttccaaacagctcacgctccaacttttccaacaactctttcttacggccatcgagatgctcttcggaacttaactttagataca 27359345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 31 - 220
Target Start/End: Original strand, 27368513 - 27368702
Alignment:
Q  31 atcactgaggactagacaacactgacaattgttaaagcaaacactggggactagacaacatcgacaattttgactgaatacaaacaaatatttgattgaa 130  Q
    ||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||  ||||||||||| |||||||||||||||||||||||||    
T  27368513 atcactgaggactagacaacattgacaattattaaagcaaacactggggattagacaacatttacaattttgaccgaatacaaacaaatatttgattgaa 27368612  T
Q  131 attaatttcaaaacagctcacgctccaactttcccaacaactcttttttccgatcatcgagatgcttttcgaaacttaactttacataca 220  Q
    ||||||||| |||||||||||||||||||||| ||||||||||||| || ||  |||||||||||| |||| |||||||||||| |||||    
T  27368613 attaatttccaaacagctcacgctccaacttttccaacaactctttcttacggccatcgagatgctcttcggaacttaactttagataca 27368702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 31 - 220
Target Start/End: Original strand, 17743675 - 17743864
Alignment:
Q  31 atcactgaggactagacaacactgacaattgttaaagcaaacactggggactagacaacatcgacaattttgactgaatacaaacaaatatttgattgaa 130  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||  ||||||| | || ||||||||||||||| |||||||||    
T  17743675 atcactgaggactagacaacattgacaattattaaagcaaacactggggactagacaacactgacaattattaccgaatacaaacaaatagttgattgaa 17743774  T
Q  131 attaatttcaaaacagctcacgctccaactttcccaacaactcttttttccgatcatcgagatgcttttcgaaacttaactttacataca 220  Q
    ||||||||  |||||||||||||||||| ||| |||||  |||||||||||| ||||||||||||| |||| ||||||||||||||||||    
T  17743775 attaatttgcaaacagctcacgctccaagttttccaacgtctcttttttccggtcatcgagatgctcttcggaacttaactttacataca 17743864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 39 - 220
Target Start/End: Original strand, 15055638 - 15055819
Alignment:
Q  39 ggactagacaacactgacaattgttaaagcaaacactggggactagacaacatcgacaattttgactgaatacaaacaaatatttgattgaaattaattt 138  Q
    |||||||||||||||||||| | |||||||||||| | ||||||||||||||  || |||||||||||||||||||||||||||||||| ||||||||||    
T  15055638 ggactagacaacactgacaaatattaaagcaaacagtcgggactagacaacactgataattttgactgaatacaaacaaatatttgattaaaattaattt 15055737  T
Q  139 caaaacagctcacgctccaactttcccaacaactcttttttccgatcatcgagatgcttttcgaaacttaactttacataca 220  Q
      ||||||||||||||||||||| ||||||| ||| || ||||| ||||||||||||| |||| |||||||||||| |||||    
T  15055738 tcaaacagctcacgctccaacttccccaacagctccttcttccggtcatcgagatgctcttcggaacttaactttagataca 15055819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 39 - 220
Target Start/End: Complemental strand, 1956331 - 1956150
Alignment:
Q  39 ggactagacaacactgacaattgttaaagcaaacactggggactagacaacatcgacaattttgactgaatacaaacaaatatttgattgaaattaattt 138  Q
    |||||||||||||||||||| | |||||||||||| | ||||||||||||||  || ||| |||||||||||||||||||||||||||| ||||||||||    
T  1956331 ggactagacaacactgacaaatattaaagcaaacagtcgggactagacaacactgataatgttgactgaatacaaacaaatatttgattaaaattaattt 1956232  T
Q  139 caaaacagctcacgctccaactttcccaacaactcttttttccgatcatcgagatgcttttcgaaacttaactttacataca 220  Q
      ||||||||||||||||||||| ||||||| ||| || ||||| ||||||||||||| ||||   |||||||||| |||||    
T  1956231 tcaaacagctcacgctccaacttccccaacagctcattcttccggtcatcgagatgctcttcgtcccttaactttagataca 1956150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 58 - 90
Target Start/End: Original strand, 15055452 - 15055484
Alignment:
Q  58 attgttaaagcaaacactggggactagacaaca 90  Q
    |||||||||||||||| ||||||||||||||||    
T  15055452 attgttaaagcaaacagtggggactagacaaca 15055484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 159; Significance: 2e-84; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 34435595 - 34435401
Alignment:
Q  1 gtcacgagggactagacaacactagggactatcactgaggactagacaacactgacaattgttaaagcaaacactggggactagacaacatcgacaattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||||| ||||||||    
T  34435595 gtcacgagggactagacaacactagggactatcactgaggactagacaacactaacaattattaaagcaaacactagggactagacaacattgacaattt 34435496  T
Q  101 tgactgaatacaaacaaatatttgattgaaattaatttcaaaacagctcacgctccaactttcccaacaactcttttttccgatcatcgagatgc 195  Q
    |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| || |||||||||    
T  34435495 tgaccgaatacaaacaaatatttgattgaaattaatttcaaaatagctcacgctccaacttttccaacaactcttttttccggtcgtcgagatgc 34435401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 40 - 218
Target Start/End: Original strand, 33606095 - 33606273
Alignment:
Q  40 gactagacaacactgacaattgttaaagcaaacactggggactagacaacatcgacaattttgactgaatacaaacaaatatttgattgaaattaatttc 139  Q
    |||||||||||||| |||||| |||||| ||||| |||| |||||||||||  |||||||||||| |||||| |||||||||||||||||||||||||||    
T  33606095 gactagacaacactaacaattattaaagtaaacattgggaactagacaacactgacaattttgaccgaataccaacaaatatttgattgaaattaatttc 33606194  T
Q  140 aaaacagctcacgctccaactttcccaacaactcttttttccgatcatcgagatgcttttcgaaacttaactttacata 218  Q
    ||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||| |||| ||||||||||||||||    
T  33606195 aaaacagctcacgctccaactcttccaacaactcttttttccggtcatcgagatgctcttcggaacttaactttacata 33606273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 39 - 220
Target Start/End: Complemental strand, 16172899 - 16172718
Alignment:
Q  39 ggactagacaacactgacaattgttaaagcaaacactggggactagacaacatcgacaattttgactgaatacaaacaaatatttgattgaaattaattt 138  Q
    ||||||| |||||||||||| | |||||||||||||| ||||||||| ||||  || |||||||||||||||||||||||||||||||| ||||||||||    
T  16172899 ggactaggcaacactgacaaatattaaagcaaacactcgggactagataacactgataattttgactgaatacaaacaaatatttgattaaaattaattt 16172800  T
Q  139 caaaacagctcacgctccaactttcccaacaactcttttttccgatcatcgagatgcttttcgaaacttaactttacataca 220  Q
    | ||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||| |||| |||||||||||| |||||    
T  16172799 ccaaacagctcacgctccaactttcccaacagctctttcttccggtcatcgagatgctcttcggaacttaactttagataca 16172718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 39 - 220
Target Start/End: Original strand, 8993777 - 8993958
Alignment:
Q  39 ggactagacaacactgacaattgttaaagcaaacactggggactagacaacatcgacaattttgactgaatacaaacaaatatttgattgaaattaattt 138  Q
    |||||||||||||||||||| | |||||||||||| | ||||||||||||||  || ||| |||||||||||||||||||||||||||| ||||||||||    
T  8993777 ggactagacaacactgacaaatattaaagcaaacagtcgggactagacaacactgataatgttgactgaatacaaacaaatatttgattaaaattaattt 8993876  T
Q  139 caaaacagctcacgctccaactttcccaacaactcttttttccgatcatcgagatgcttttcgaaacttaactttacataca 220  Q
      ||||||||||||||||||||| ||||||| ||| || ||||| ||||||||||||| ||||   |||||||||| |||||    
T  8993877 tcaaacagctcacgctccaacttccccaacagctcattcttccggtcatcgagatgctcttcgtcccttaactttagataca 8993958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 39 - 220
Target Start/End: Original strand, 13112555 - 13112736
Alignment:
Q  39 ggactagacaacactgacaattgttaaagcaaacactggggactagacaacatcgacaattttgactgaatacaaacaaatatttgattgaaattaattt 138  Q
    |||||||||||||||||||| | |||||||||||| | ||||||||||||||  || ||| |||||||||||||||||||||||||||| ||||||||||    
T  13112555 ggactagacaacactgacaaatattaaagcaaacagtcgggactagacaacactgataatgttgactgaatacaaacaaatatttgattaaaattaattt 13112654  T
Q  139 caaaacagctcacgctccaactttcccaacaactcttttttccgatcatcgagatgcttttcgaaacttaactttacataca 220  Q
      ||||||||||||||||||||| ||||||| ||| || ||||| ||||||||||||| ||||   |||||||||| |||||    
T  13112655 tcaaacagctcacgctccaacttccccaacagctcattcttccggtcatcgagatgctcttcgtcccttaactttagataca 13112736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 39 - 220
Target Start/End: Complemental strand, 3616296 - 3616115
Alignment:
Q  39 ggactagacaacactgacaattgttaaagcaaacactggggactagacaacatcgacaattttgactgaatacaaacaaatatttgattgaaattaattt 138  Q
    |||||||||||||||||||| | |||||||||||| | ||||||||||||||  || ||| |||||||||||||||||||||||||||| ||||||||||    
T  3616296 ggactagacaacactgacaaatattaaagcaaacagttgggactagacaacactgataatgttgactgaatacaaacaaatatttgattaaaattaattt 3616197  T
Q  139 caaaacagctcacgctccaactttcccaacaactcttttttccgatcatcgagatgcttttcgaaacttaactttacataca 220  Q
      ||||| ||||||||||||||| ||||||| ||| || ||||| ||||||||||||| ||||   |||||||||| |||||    
T  3616196 tcaaacaactcacgctccaacttccccaacagctcattcttccggtcatcgagatgctcttcgtcccttaactttagataca 3616115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 53182480 - 53182276
Alignment:
Q  1 gtcacgagggactagacaacactagggactatcactgaggactagacaacactgacaattgttaaagcaaacactggggactagacaacatcgacaattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||| ||||  ||||||||||  ||||||||    
T  53182480 gtcacgagggactagacaacactagggactatcactgaggactagacaatactgacaattattaaagtaaacattgggacctagacaacactgacaattt 53182381  T
Q  101 tgactgaatacaaacaaatatttgattgaaattaatttcaaaacagctcacgctccaactttcccaacaactcttttttccgatcatcgagatgcttttc 200  Q
    |||| ||||||||||||||               ||||||||||||||||||| |||| ||| |||||| |||||||||||| ||||| ||||||| |||    
T  53182380 tgaccgaatacaaacaaat---------------atttcaaaacagctcacgcaccaagttttccaacagctcttttttccggtcatcaagatgctcttc 53182296  T
Q  201 gaaacttaactttacataca 220  Q
      |||||||||||| |||||    
T  53182295 agaacttaactttagataca 53182276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 39 - 220
Target Start/End: Complemental strand, 46915521 - 46915340
Alignment:
Q  39 ggactagacaacactgacaattgttaaagcaaacactggggactagacaacatcgacaattttgactgaatacaaacaaatatttgattgaaattaattt 138  Q
    |||||||||||||||||||| | |||||||||||| | ||||||||||||||  || ||| |||||||||||||||||||||||||||| ||||||||||    
T  46915521 ggactagacaacactgacaaatattaaagcaaacagtcgggactagacaacactgataatgttgactgaatacaaacaaatatttgattaaaattaattt 46915422  T
Q  139 caaaacagctcacgctccaactttcccaacaactcttttttccgatcatcgagatgcttttcgaaacttaactttacataca 220  Q
      |||||||||||||||||||||  |||||| ||| || ||||| ||||||| ||||| ||||   |||||||||| |||||    
T  46915421 tcaaacagctcacgctccaacttctccaacagctccttcttccggtcatcgacatgctcttcgtcccttaactttagataca 46915340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 39 - 201
Target Start/End: Complemental strand, 3531307 - 3531145
Alignment:
Q  39 ggactagacaacactgacaattgttaaagcaaacactggggactagacaacatcgacaattttgactgaatacaaacaaatatttgattgaaattaattt 138  Q
    |||||||||||||||||||| | |||||||||||| | | ||||||||||||  || ||| |||||||||||||||||||||||||||| ||||||||||    
T  3531307 ggactagacaacactgacaaatattaaagcaaacagtcgagactagacaacactgataatgttgactgaatacaaacaaatatttgattaaaattaattt 3531208  T
Q  139 caaaacagctcacgctccaactttcccaacaactcttttttccgatcatcgagatgcttttcg 201  Q
      |||||||||| |||||||||| ||||||| ||| || ||||| ||||||||||||| ||||    
T  3531207 tcaaacagctcatgctccaacttccccaacagctcattcttccggtcatcgagatgctcttcg 3531145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 39 - 220
Target Start/End: Complemental strand, 2213326 - 2213146
Alignment:
Q  39 ggactagacaacactgacaattgttaaagcaaacactggggactagacaacatcgacaattttgactgaatacaaacaaatatttgattgaaattaattt 138  Q
    ||||||||||||| |||||| | |||||||||||| | ||||||||||||||  || ||| |||||||||||||||||||||||||||| ||||||||||    
T  2213326 ggactagacaaca-tgacaaatattaaagcaaacagtcgggactagacaacactgataatgttgactgaatacaaacaaatatttgattaaaattaattt 2213228  T
Q  139 caaaacagctcacgctccaactttcccaacaactcttttttccgatcatcgagatgcttttcgaaacttaactttacataca 220  Q
      |||||||||||||||||||||  |||||| ||| || ||||| ||||||||||||| ||||   |||||||||| |||||    
T  2213227 tcaaacagctcacgctccaacttctccaacagctccttcttccggtcatcgagatgctcttcgtcccttaactttagataca 2213146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 72 - 221
Target Start/End: Original strand, 36657582 - 36657730
Alignment:
Q  72 cactggggactagacaacatcgacaattttgactgaatacaaacaaatatttgattgaaattaatttcaaaacagctcacgctccaactttcccaacaac 171  Q
    ||||| |||||||||||||  ||||||||||||  ||||||||||||||||||||||||||||||||  |||||||||||||||||| ||| | |||| |    
T  36657582 cactgaggactagacaacactgacaattttgaccaaatacaaacaaatatttgattgaaattaattttcaaacagctcacgctccaagttttctaacagc 36657681  T
Q  172 tcttttttccgatcatcgagatgcttttcgaaacttaactttacatacag 221  Q
    | |||||| || |||| |||||||| |||| |||||||||||||||||||    
T  36657682 tatttttt-cggtcattgagatgctcttcggaacttaactttacatacag 36657730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 97 - 220
Target Start/End: Original strand, 28446348 - 28446471
Alignment:
Q  97 attttgactgaatacaaacaaatatttgattgaaattaatttcaaaacagctcacgctccaactttcccaacaactcttttttccgatcatcgagatgct 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||  | |||||||| |||||| |||||| ||||| |||| ||||||||    
T  28446348 attttgactgaatacaaacaaatatttgattgaaattaatttcaaaacaactcaaacaccaacttttccaacatctctttcttccggtcattgagatgct 28446447  T
Q  197 tttcgaaacttaactttacataca 220  Q
     ||||  |||||||||||||||||    
T  28446448 cttcgggacttaactttacataca 28446471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 16 - 90
Target Start/End: Original strand, 33606032 - 33606106
Alignment:
Q  16 acaacactagggactatcactgaggactagacaacactgacaattgttaaagcaaacactggggactagacaaca 90  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||| ||| ||||||||||||    
T  33606032 acaacactagggactatcactgaggactagacaacactgtcaattattaaagtaaacattggagactagacaaca 33606106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 36657557 - 36657609
Alignment:
Q  8 gggactagacaacactagggactatcactgaggactagacaacactgacaatt 60  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36657557 gggactagacaacactagggactatcactgaggactagacaacactgacaatt 36657609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 39 - 90
Target Start/End: Complemental strand, 2213488 - 2213437
Alignment:
Q  39 ggactagacaacactgacaattgttaaagcaaacactggggactagacaaca 90  Q
    |||||||||||||||||||||| |||||| ||||| ||||||||||||||||    
T  2213488 ggactagacaacactgacaattattaaagtaaacattggggactagacaaca 2213437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 39 - 90
Target Start/End: Complemental strand, 46915683 - 46915632
Alignment:
Q  39 ggactagacaacactgacaattgttaaagcaaacactggggactagacaaca 90  Q
    |||||||||||||||||||||| |||||| ||||| ||||||||||||||||    
T  46915683 ggactagacaacactgacaattattaaagtaaacattggggactagacaaca 46915632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 39 - 90
Target Start/End: Complemental strand, 3531387 - 3531336
Alignment:
Q  39 ggactagacaacactgacaattgttaaagcaaacactggggactagacaaca 90  Q
    |||||||||||||||||||| | |||||||||||| || |||||||||||||    
T  3531387 ggactagacaacactgacaaatattaaagcaaacagtgaggactagacaaca 3531336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 39 - 90
Target Start/End: Complemental strand, 16173106 - 16173055
Alignment:
Q  39 ggactagacaacactgacaattgttaaagcaaacactggggactagacaaca 90  Q
    ||||||||||||||||| |||| |||||||||||| | ||||||||||||||    
T  16173106 ggactagacaacactgataattattaaagcaaacagtcgggactagacaaca 16173055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 90
Target Start/End: Complemental strand, 16173145 - 16173094
Alignment:
Q  39 ggactagacaacactgacaattgttaaagcaaacactggggactagacaaca 90  Q
    ||||||||||||||||| | || |||||||||||| | ||||||||||||||    
T  16173145 ggactagacaacactgatatttattaaagcaaacagtcgggactagacaaca 16173094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 90
Target Start/End: Complemental strand, 3531351 - 3531295
Alignment:
Q  36 tgaggactagacaacact--gacaattgttaaagcaaacactggggactagacaaca 90  Q
    ||||||||||||||||||  || |||| ||||||||||||||  |||||||||||||    
T  3531351 tgaggactagacaacactctgataattattaaagcaaacactacggactagacaaca 3531295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 90
Target Start/End: Complemental strand, 3531513 - 3531457
Alignment:
Q  36 tgaggactagacaacact--gacaattgttaaagcaaacactggggactagacaaca 90  Q
    ||||||||||||||||||  || |||| |||||||||||| || |||||||||||||    
T  3531513 tgaggactagacaacactctgataattattaaagcaaacagtgaggactagacaaca 3531457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 90
Target Start/End: Original strand, 8993733 - 8993789
Alignment:
Q  36 tgaggactagacaacact--gacaattgttaaagcaaacactggggactagacaaca 90  Q
    ||||||||||||||||||  || |||| ||||||||||||||  |||||||||||||    
T  8993733 tgaggactagacaacactctgataattattaaagcaaacactacggactagacaaca 8993789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 90
Target Start/End: Original strand, 13112511 - 13112567
Alignment:
Q  36 tgaggactagacaacact--gacaattgttaaagcaaacactggggactagacaaca 90  Q
    ||||||||||||||||||  || |||| ||||||||||||||  |||||||||||||    
T  13112511 tgaggactagacaacactctgataattattaaagcaaacactacggactagacaaca 13112567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1240 (Bit Score: 157; Significance: 3e-83; HSPs: 1)
Name: scaffold1240
Description:

Target: scaffold1240; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 777 - 557
Alignment:
Q  1 gtcacgagggactagacaacactagggactatcactgaggactagacaacactgacaattgttaaagcaaacactggggactagacaacatcgacaattt 100  Q
    |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||  ||||||||    
T  777 gtcacgggggactagacaacactagggactatcattgaggactagacaacactgacaattattaaagcaaacactggggactatacaacactgacaattt 678  T
Q  101 tgactgaatacaaacaaatatttgattgaaattaatttcaaaacagctcacgctccaactttcccaacaactcttttttccgatcatcgagatgcttttc 200  Q
    |||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||| |||||| |||||||| ||| ||||||||||||| |||    
T  677 tgaccgaatacaaacaattatttgattgaaattaatttccaaacagctcacgctccaagttttccaacagctctttttcccggtcatcgagatgctcttc 578  T
Q  201 gaaacttaactttacatacag 221  Q
    | |||||||||||||||||||    
T  577 ggaacttaactttacatacag 557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 151; Significance: 1e-79; HSPs: 39)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 33750634 - 33750855
Alignment:
Q  1 gtcacgagggactagacaacactagggactatcactgaggactagacaacactga--caattgttaaagcaaacactggggactagacaacatcgacaat 98  Q
    |||||| |||||||||||||||||||||||||||||||||| |||||||||||||  ||||| |||||||||||||||||||||||||||||  ||||||    
T  33750634 gtcacgggggactagacaacactagggactatcactgaggattagacaacactgaaacaattattaaagcaaacactggggactagacaacactgacaat 33750733  T
Q  99 tttgactgaatacaaacaaatatttgattgaaattaatttcaaaacagctcacgctccaactttcccaacaactcttttttccgatcatcgagatgcttt 198  Q
    |||||| |||||||||||| ||||||||||||||||||||| ||| |||||||||||||| ||| |||||| |||||||||||| ||||||||||||| |    
T  33750734 tttgaccgaatacaaacaattatttgattgaaattaatttccaaaaagctcacgctccaagttttccaacacctcttttttccggtcatcgagatgctct 33750833  T
Q  199 tcgaaacttaactttacataca 220  Q
    ||| ||||||||||||||||||    
T  33750834 tcggaacttaactttacataca 33750855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 50019070 - 50019290
Alignment:
Q  1 gtcacgagggactagacaacactagggactatcactgaggactagacaacactgacaattgttaaagcaaacactggggactagacaacatcgacaattt 100  Q
    |||||| ||||||||||||| ||||||||||||||| ||||||| |||| ||| |||||| |||||||||||||||||||||||||||||   |||||||    
T  50019070 gtcacgggggactagacaacgctagggactatcactaaggactatacaaaactaacaattattaaagcaaacactggggactagacaacactaacaattt 50019169  T
Q  101 tgactgaatacaaacaaatatttgattgaaattaatttcaaaacagctcacgctccaactttcccaacaactcttttttccgatcatcgagatgcttttc 200  Q
    |||  |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||   ||||||||||||| |||    
T  50019170 tgatcgaatacaaacaaatatttgattgaaattaatttccaaacagctcacgctccaagttttccaacaactcttttttctagtcatcgagatgctcttc 50019269  T
Q  201 gaaacttaactttacatacag 221  Q
    | |||||||||||||||||||    
T  50019270 ggaacttaactttacatacag 50019290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 26158168 - 26157948
Alignment:
Q  1 gtcacgagggactagacaacactagggactatcactgaggactagacaacactgacaattgttaaagcaaacactggggactagacaacatcgacaattt 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||| ||||||||||||||||  ||||||||    
T  26158168 gtcacgggggactagacaacactagggactatcactgaggactagacaacactgacacttattaaagtaaacattggggactagacaacactgacaattt 26158069  T
Q  101 tgactgaatacaaacaaatatttgattgaaattaatttcaaaacagctcacgctccaactttcccaacaactcttttttccgatcatcgagatgcttttc 200  Q
    |||| |||||||| ||||||||||| ||||||||||||||||||| ||||||  ||||||   |||||||| ||||||| || ||||| ||||||| |||    
T  26158068 tgaccgaatacaaccaaatatttgactgaaattaatttcaaaacaactcacgtaccaactcctccaacaacgctttttttcggtcatcaagatgctcttc 26157969  T
Q  201 gaaacttaactttacatacag 221  Q
      |||||||||||||||||||    
T  26157968 agaacttaactttacatacag 26157948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 39 - 220
Target Start/End: Complemental strand, 30416508 - 30416327
Alignment:
Q  39 ggactagacaacactgacaattgttaaagcaaacactggggactagacaacatcgacaattttgactgaatacaaacaaatatttgattgaaattaattt 138  Q
    |||||||||||||||||||| | |||||||||||| | ||||||||||||||  || ||| |||||||||||||||||||||||||||| ||||||||||    
T  30416508 ggactagacaacactgacaaatattaaagcaaacagtcgggactagacaacactgataatgttgactgaatacaaacaaatatttgattaaaattaattt 30416409  T
Q  139 caaaacagctcacgctccaactttcccaacaactcttttttccgatcatcgagatgcttttcgaaacttaactttacataca 220  Q
      ||||||||||||||||||||| ||||||| ||| || ||||| ||||||||||||| ||||   |||||||||| |||||    
T  30416408 tcaaacagctcacgctccaacttccccaacagctcattcttccggtcatcgagatgctcttcgtcccttaactttagataca 30416327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 39 - 220
Target Start/End: Original strand, 42563001 - 42563182
Alignment:
Q  39 ggactagacaacactgacaattgttaaagcaaacactggggactagacaacatcgacaattttgactgaatacaaacaaatatttgattgaaattaattt 138  Q
    |||| ||||||||||||||| | ||||||||||||   ||||||||||||||   | ||| |||||||||||||||||||||||||||| ||||||||||    
T  42563001 ggaccagacaacactgacaaatattaaagcaaacagacgggactagacaacactaataatgttgactgaatacaaacaaatatttgattaaaattaattt 42563100  T
Q  139 caaaacagctcacgctccaactttcccaacaactcttttttccgatcatcgagatgcttttcgaaacttaactttacataca 220  Q
      ||||||||||||||||||||| ||||||| ||| || ||||| ||||||||||||| ||||||||||||||||| |||||    
T  42563101 tcaaacagctcacgctccaacttccccaacagctccttcttccggtcatcgagatgctcttcgaaacttaactttagataca 42563182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 39 - 220
Target Start/End: Complemental strand, 10425704 - 10425523
Alignment:
Q  39 ggactagacaacactgacaattgttaaagcaaacactggggactagacaacatcgacaattttgactgaatacaaacaaatatttgattgaaattaattt 138  Q
    |||||||||||||||||||| | |||||||||||| | ||||||||||||||  || ||| |||||||||||||||||||||||||||| ||||||||||    
T  10425704 ggactagacaacactgacaaatattaaagcaaacagtcgggactagacaacactgataatgttgactgaatacaaacaaatatttgattaaaattaattt 10425605  T
Q  139 caaaacagctcacgctccaactttcccaacaactcttttttccgatcatcgagatgcttttcgaaacttaactttacataca 220  Q
      ||||||||||||||||||||| ||||||| ||| || ||| | ||||||||||||| ||||   |||||||||| |||||    
T  10425604 tcaaacagctcacgctccaacttccccaacagctcattcttctggtcatcgagatgctcttcgtcccttaactttagataca 10425523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 39 - 220
Target Start/End: Original strand, 17468505 - 17468686
Alignment:
Q  39 ggactagacaacactgacaattgttaaagcaaacactggggactagacaacatcgacaattttgactgaatacaaacaaatatttgattgaaattaattt 138  Q
    |||||||||||||||||||| | |||||||||||| | ||||||||||||||  || ||| |||||||||||||||||||||||||||| ||||||||||    
T  17468505 ggactagacaacactgacaaatattaaagcaaacagtcgggactagacaacactgataatgttgactgaatacaaacaaatatttgattaaaattaattt 17468604  T
Q  139 caaaacagctcacgctccaactttcccaacaactcttttttccgatcatcgagatgcttttcgaaacttaactttacataca 220  Q
      |||||||||||||||||||||  |||||| ||| || ||||| ||||||||||||| ||||   |||||||||| |||||    
T  17468605 tcaaacagctcacgctccaacttctccaacagctccttcttccggtcatcgagatgctcttcgtcccttaactttagataca 17468686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 39 - 220
Target Start/End: Complemental strand, 25788752 - 25788571
Alignment:
Q  39 ggactagacaacactgacaattgttaaagcaaacactggggactagacaacatcgacaattttgactgaatacaaacaaatatttgattgaaattaattt 138  Q
    |||||||||||||||||||| | |||||||||||| | ||||||||||||||  || ||| |||||||||||||||||||||||||||| ||||||||||    
T  25788752 ggactagacaacactgacaaatattaaagcaaacagtcgggactagacaacactgataatgttgactgaatacaaacaaatatttgattaaaattaattt 25788653  T
Q  139 caaaacagctcacgctccaactttcccaacaactcttttttccgatcatcgagatgcttttcgaaacttaactttacataca 220  Q
      |||||||||||||||||||||  |||||| ||| || ||||| ||||||||||||| ||||   |||||||||| |||||    
T  25788652 tcaaacagctcacgctccaacttctccaacagctccttcttccggtcatcgagatgctcttcgtcccttaactttagataca 25788571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 39 - 220
Target Start/End: Complemental strand, 42599407 - 42599226
Alignment:
Q  39 ggactagacaacactgacaattgttaaagcaaacactggggactagacaacatcgacaattttgactgaatacaaacaaatatttgattgaaattaattt 138  Q
    |||||||||||||||||||| | |||||||||||| | ||||||||||||||  || ||| |||||||||||||||||||||||||||| ||||||||||    
T  42599407 ggactagacaacactgacaaatattaaagcaaacagtcgggactagacaacactgataatgttgactgaatacaaacaaatatttgattaaaattaattt 42599308  T
Q  139 caaaacagctcacgctccaactttcccaacaactcttttttccgatcatcgagatgcttttcgaaacttaactttacataca 220  Q
      |||||||||||||||||||||  |||||| ||| || ||||| ||||||||||||| ||||   |||||||||| |||||    
T  42599307 tcaaacagctcacgctccaacttctccaacagctccttcttccggtcatcgagatgctcttcgtcccttaactttagataca 42599226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 39 - 220
Target Start/End: Original strand, 47146362 - 47146543
Alignment:
Q  39 ggactagacaacactgacaattgttaaagcaaacactggggactagacaacatcgacaattttgactgaatacaaacaaatatttgattgaaattaattt 138  Q
    |||||||||||||||||||| | |||||||||||| | ||||||||||||||  || ||| |||||||||||||||||||||||||||| ||||||||||    
T  47146362 ggactagacaacactgacaaatattaaagcaaacagtcgggactagacaacactgataatgttgactgaatacaaacaaatatttgattaaaattaattt 47146461  T
Q  139 caaaacagctcacgctccaactttcccaacaactcttttttccgatcatcgagatgcttttcgaaacttaactttacataca 220  Q
      |||||||||||||||||||||  |||||| ||| || ||||| ||||||||||||| ||||   |||||||||| |||||    
T  47146462 tcaaacagctcacgctccaacttctccaacagctccttcttccggtcatcgagatgctcttcgtcccttaactttagataca 47146543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 39 - 220
Target Start/End: Complemental strand, 25830709 - 25830528
Alignment:
Q  39 ggactagacaacactgacaattgttaaagcaaacactggggactagacaacatcgacaattttgactgaatacaaacaaatatttgattgaaattaattt 138  Q
    |||||||||||||||||||| | |||||||||||| | ||||||||||||||  || ||| |||||||||||||||||||||||||||| ||||||||||    
T  25830709 ggactagacaacactgacaaatattaaagcaaacagtcgggactagacaacactgataatgttgactgaatacaaacaaatatttgattaaaattaattt 25830610  T
Q  139 caaaacagctcacgctccaactttcccaacaactcttttttccgatcatcgagatgcttttcgaaacttaactttacataca 220  Q
      |||||||||||||||||| ||  |||||| ||| || ||||| ||||||||||||| ||||   |||||||||| |||||    
T  25830609 tcaaacagctcacgctccaaattctccaacagctccttcttccggtcatcgagatgctcttcgtcccttaactttagataca 25830528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 33189041 - 33188901
Alignment:
Q  1 gtcacgagggactagacaacactagggactatcactgaggactagacaacactgacaattgttaaagcaaacactggggactagacaacatcgacaattt 100  Q
    |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||| || ||||||||||   |||||||    
T  33189041 gtcacgggggactagacaacactagggactatcaccgaggactagacaacactgacaattattaaaacaaacactgaggtctagacaacactaacaattt 33188942  T
Q  101 tgactgaatacaaacaaatatttgattgaaattaatttcaa 141  Q
    |||| ||||||||||||||| | ||||| ||||||||||||    
T  33188941 tgaccgaatacaaacaaatactggattgcaattaatttcaa 33188901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 39 - 201
Target Start/End: Complemental strand, 6046380 - 6046218
Alignment:
Q  39 ggactagacaacactgacaattgttaaagcaaacactggggactagacaacatcgacaattttgactgaatacaaacaaatatttgattgaaattaattt 138  Q
    |||||||||||||||||||| | |||||||||||| |  |||||||||||||  || ||| ||||| |||||||||||||||||||||| ||||||||||    
T  6046380 ggactagacaacactgacaaatattaaagcaaacagtcaggactagacaacactgataatgttgacggaatacaaacaaatatttgattaaaattaattt 6046281  T
Q  139 caaaacagctcacgctccaactttcccaacaactcttttttccgatcatcgagatgcttttcg 201  Q
      ||||||||||||||||||||| ||||||| ||| || ||||| ||||||||||||| ||||    
T  6046280 tcaaacagctcacgctccaacttccccaacagctcattcttccggtcatcgagatgctcttcg 6046218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 53 - 196
Target Start/End: Original strand, 21227202 - 21227345
Alignment:
Q  53 tgacaattgttaaagcaaacactggggactagacaacatcgacaattttgactgaatacaaacaaatatttgattgaaattaatttcaaaacagctcacg 152  Q
    |||||||| ||||||||||||| ||||||| |||||||  | ||| |||||| ||||||||||||||| |||||||||||||||||| |||||| ||  |    
T  21227202 tgacaattattaaagcaaacaccggggacttgacaacactgccaagtttgaccgaatacaaacaaataattgattgaaattaatttccaaacagttcttg 21227301  T
Q  153 ctccaactttcccaacaactcttttttccgatcatcgagatgct 196  Q
      ||||||||||||||| |||||| ||||| |||||||||||||    
T  21227302 gcccaactttcccaacatctctttcttccggtcatcgagatgct 21227345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 39 - 119
Target Start/End: Original strand, 51429021 - 51429100
Alignment:
Q  39 ggactagacaacactgacaattgttaaagcaaacactggggactagacaacatcgacaattttgactgaatacaaacaaat 119  Q
    |||||||||||||||||||||| |||||| ||||| |||| |||||||||||| |||||||||||| ||||||||||||||    
T  51429021 ggactagacaacactgacaattattaaagtaaacattgggaactagacaacat-gacaattttgaccgaatacaaacaaat 51429100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 39 - 90
Target Start/End: Complemental strand, 25788832 - 25788781
Alignment:
Q  39 ggactagacaacactgacaattgttaaagcaaacactggggactagacaaca 90  Q
    |||||||||||||||||||||| |||||| ||||| ||||||||||||||||    
T  25788832 ggactagacaacactgacaattattaaagtaaacattggggactagacaaca 25788781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 39 - 90
Target Start/End: Complemental strand, 25788979 - 25788928
Alignment:
Q  39 ggactagacaacactgacaattgttaaagcaaacactggggactagacaaca 90  Q
    |||||||||||||||||||||| |||||| ||||| ||||||||||||||||    
T  25788979 ggactagacaacactgacaattattaaagtaaacattggggactagacaaca 25788928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 39 - 90
Target Start/End: Complemental strand, 25830789 - 25830738
Alignment:
Q  39 ggactagacaacactgacaattgttaaagcaaacactggggactagacaaca 90  Q
    |||||||||||||||||||||| |||||| ||||| ||||||||||||||||    
T  25830789 ggactagacaacactgacaattattaaagtaaacattggggactagacaaca 25830738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 39 - 90
Target Start/End: Complemental strand, 25830936 - 25830885
Alignment:
Q  39 ggactagacaacactgacaattgttaaagcaaacactggggactagacaaca 90  Q
    |||||||||||||||||||||| |||||| ||||| ||||||||||||||||    
T  25830936 ggactagacaacactgacaattattaaagtaaacattggggactagacaaca 25830885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 39 - 90
Target Start/End: Original strand, 47146036 - 47146087
Alignment:
Q  39 ggactagacaacactgacaattgttaaagcaaacactggggactagacaaca 90  Q
    |||||||||||||||||||||| |||||| ||||| ||||||||||||||||    
T  47146036 ggactagacaacactgacaattattaaagtaaacattggggactagacaaca 47146087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 39 - 90
Target Start/End: Original strand, 47146202 - 47146253
Alignment:
Q  39 ggactagacaacactgacaattgttaaagcaaacactggggactagacaaca 90  Q
    |||||||||||||||||||||| |||||| ||||| ||||||||||||||||    
T  47146202 ggactagacaacactgacaattattaaagtaaacattggggactagacaaca 47146253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 42599645 - 42599585
Alignment:
Q  39 ggactagacaacactgacaattgttaaagcaaacactggggactagacaacatcgacaatt 99  Q
    |||||||||||||||||||| | |||||||||||| | |||||||||||||| ||| ||||    
T  42599645 ggactagacaacactgacaaatattaaagcaaacagtcgggactagacaacaccgataatt 42599585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 39 - 90
Target Start/End: Original strand, 42562769 - 42562820
Alignment:
Q  39 ggactagacaacactgacaattgttaaagcaaacactggggactagacaaca 90  Q
    ||||||||||||||||| |||| |||||||||||| || |||||||||||||    
T  42562769 ggactagacaacactgataattattaaagcaaacagtgaggactagacaaca 42562820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 39 - 90
Target Start/End: Complemental strand, 42599487 - 42599436
Alignment:
Q  39 ggactagacaacactgacaattgttaaagcaaacactggggactagacaaca 90  Q
    ||||||||||||||||| |||| |||||||||||| || |||||||||||||    
T  42599487 ggactagacaacactgataattattaaagcaaacagtgaggactagacaaca 42599436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 39 - 90
Target Start/End: Complemental strand, 42599526 - 42599475
Alignment:
Q  39 ggactagacaacactgacaattgttaaagcaaacactggggactagacaaca 90  Q
    |||||||||||||||||||| | |||||||||||| | ||||||||||||||    
T  42599526 ggactagacaacactgacaaatattaaagcaaacagtcgggactagacaaca 42599475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 39 - 90
Target Start/End: Original strand, 47146323 - 47146374
Alignment:
Q  39 ggactagacaacactgacaattgttaaagcaaacactggggactagacaaca 90  Q
    |||||||||||||||||||| | ||||||||||||||  |||||||||||||    
T  47146323 ggactagacaacactgacaaatattaaagcaaacactacggactagacaaca 47146374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 40 - 220
Target Start/End: Complemental strand, 21230574 - 21230393
Alignment:
Q  40 gactagacaacactgacaattgttaaagcaaacactggggactagacaacatcgacaa-ttttgactgaatacaaacaaatatttgattgaaattaattt 138  Q
    |||| |||| ||||||||||| ||||||||||||||||||||| |||| ||  | ||| ||| | | |||  ||  |||||| |||||| ||||||||||    
T  21230574 gacttgacatcactgacaattattaaagcaaacactggggacttgacagcactgccaagtttggtcggaactcagtcaaataattgattaaaattaattt 21230475  T
Q  139 caaaacagctcacgctccaactttcccaacaactcttttttccgatcatcgagatgcttttcgaaacttaactttacataca 220  Q
    | ||| || ||  |  |||||||| ||||||  ||||| ||| | ||||||||||||| || | |||||| ||||| |||||    
T  21230474 ccaaatagttcttggcccaacttttccaacatatctttcttctggtcatcgagatgctctttggaacttatctttatataca 21230393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 36 - 88
Target Start/End: Original strand, 42562805 - 42562857
Alignment:
Q  36 tgaggactagacaacactgacaattgttaaagcaaacactggggactagacaa 88  Q
    |||||||||||||||||||| |||| |||||||||||| || || ||||||||    
T  42562805 tgaggactagacaacactgataattattaaagcaaacaatgagggctagacaa 42562857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 90
Target Start/End: Complemental strand, 6046501 - 6046450
Alignment:
Q  39 ggactagacaacactgacaattgttaaagcaaacactggggactagacaaca 90  Q
    |||||||||||||||||||| | |||||||||||| |  |||||||||||||    
T  6046501 ggactagacaacactgacaaatattaaagcaaacagtcaggactagacaaca 6046450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 90
Target Start/End: Complemental strand, 6046663 - 6046612
Alignment:
Q  39 ggactagacaacactgacaattgttaaagcaaacactggggactagacaaca 90  Q
    |||||||||||||||||||| | |||||||||||| |  |||||||||||||    
T  6046663 ggactagacaacactgacaaatattaaagcaaacagtcaggactagacaaca 6046612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 90
Target Start/End: Complemental strand, 6046784 - 6046733
Alignment:
Q  39 ggactagacaacactgacaattgttaaagcaaacactggggactagacaaca 90  Q
    |||||||||||||||||||| | |||||||||||| |  |||||||||||||    
T  6046784 ggactagacaacactgacaaatattaaagcaaacagtcaggactagacaaca 6046733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 90
Target Start/End: Complemental strand, 42599606 - 42599555
Alignment:
Q  39 ggactagacaacactgacaattgttaaagcaaacactggggactagacaaca 90  Q
    |||||||||||||| || |||| |||||||||||| || |||||||||||||    
T  42599606 ggactagacaacaccgataattattaaagcaaacagtgaggactagacaaca 42599555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 90
Target Start/End: Original strand, 17468461 - 17468517
Alignment:
Q  36 tgaggactagacaacact--gacaattgttaaagcaaacactggggactagacaaca 90  Q
    ||||||||||||||||||  || |||| ||||||||||||||  |||||||||||||    
T  17468461 tgaggactagacaacactctgataattattaaagcaaacactacggactagacaaca 17468517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 90
Target Start/End: Complemental strand, 30416552 - 30416496
Alignment:
Q  36 tgaggactagacaacact--gacaattgttaaagcaaacactggggactagacaaca 90  Q
    ||||||||||||||||||  || |||| ||||||||||||||  |||||||||||||    
T  30416552 tgaggactagacaacactctgataattattaaagcaaacactacggactagacaaca 30416496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 410
Target Start/End: Complemental strand, 32240779 - 32240660
Alignment:
Q  293 aagaccaggctgctccacatatattgacatgttaaaagcacaactttttaattgagtataatatactttt-cgacctgttt--atttatctacctttgat 389  Q
    |||| ||||| ||||| |||||| |||||| ||||||||  || ||||||||||  || |||||  |||| | ||||||||  ||| ||| |||||||||    
T  32240779 aagatcaggcagctcctcatatactgacatattaaaagcg-aagtttttaattgcataaaatatcttttttctacctgtttttattgatcaacctttgat 32240681  T
Q  390 ttttcttcttctgttggttca 410  Q
    |||||||||||| ||||||||    
T  32240680 ttttcttcttctattggttca 32240660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 90
Target Start/End: Complemental strand, 42599451 - 42599395
Alignment:
Q  36 tgaggactagacaacact--gacaattgttaaagcaaacactggggactagacaaca 90  Q
    ||||||||||||||||||  || |||| ||||||||||||||  |||||||||||||    
T  42599451 tgaggactagacaacactctgataattattaaagcaaacactacggactagacaaca 42599395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 90
Target Start/End: Complemental strand, 42599570 - 42599514
Alignment:
Q  36 tgaggactagacaacact--gacaattgttaaagcaaacactggggactagacaaca 90  Q
    ||||||||||||||||||  || |||| ||||||||||||||  |||||||||||||    
T  42599570 tgaggactagacaacactctgataattattaaagcaaacactacggactagacaaca 42599514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 148
Target Start/End: Original strand, 53722743 - 53722784
Alignment:
Q  107 aatacaaacaaatatttgattgaaattaatttcaaaacagct 148  Q
    |||||| |||||||||||||||||||||||||  ||||||||    
T  53722743 aatacagacaaatatttgattgaaattaattttcaaacagct 53722784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 36 - 89
Target Start/End: Complemental strand, 10425871 - 10425816
Alignment:
Q  36 tgaggactagacaacact--gacaattgttaaagcaaacactggggactagacaac 89  Q
    ||||||||||||||||||  || |||| |||||||||||| || ||||||||||||    
T  10425871 tgaggactagacaacactctgataattattaaagcaaacagtgaggactagacaac 10425816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 150; Significance: 4e-79; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 8 - 221
Target Start/End: Complemental strand, 47298608 - 47298395
Alignment:
Q  8 gggactagacaacactagggactatcactgaggactagacaacactgacaattgttaaagcaaacactggggactagacaacatcgacaattttgactga 107  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||| ||| ||||||  |||||||||||| ||    
T  47298608 gggactagacaacactagggaccatcactgaggactagacaacactgacaattattaaagcaaacattggggtctaaacaacactgacaattttgaccga 47298509  T
Q  108 atacaaacaaatatttgattgaaattaatttcaaaacagctcacgctccaactttcccaacaactcttttttccgatcatcgagatgcttttcgaaactt 207  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||| |||||||||| || |||| |||||    
T  47298508 atacaaacaaatattggattgcaattaatttcaaaacagctcacgctccaacttttccaacagctcttttttccggtcatcgagatactcttcggaactt 47298409  T
Q  208 aactttacatacag 221  Q
    ||||||||||||||    
T  47298408 aactttacatacag 47298395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 33166258 - 33166478
Alignment:
Q  1 gtcacgagggactagacaacactagggactatcactgaggactagacaacactgacaattgttaaagcaaacactggggactagacaacatcgacaattt 100  Q
    |||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||| ||| | ||| ||||||||||||  ||||||||    
T  33166258 gtcacgggggactagacgacactagagactatcactgaggactagacaacactgacaattattaaagtaaaaattggagactagacaacactgacaattt 33166357  T
Q  101 tgactgaatacaaacaaatatttgattgaaattaatttcaaaacagctcacgctccaactttcccaacaactcttttttccgatcatcgagatgcttttc 200  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||| |||| || |||    
T  33166358 tgaccgaatacaaacaaatatttgattgaaattaatttcaaaacagctcacgctccaacttttccaacagctcttttttccggtcatcaagattctcttc 33166457  T
Q  201 gaaacttaactttacatacag 221  Q
    | |||||||||||||||||||    
T  33166458 ggaacttaactttacatacag 33166478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 38837752 - 38837535
Alignment:
Q  1 gtcacgagggactagacaacactagggactatcactgaggactagacaacactgacaattgttaaagcaaacactggggactagacaacatcgacaattt 100  Q
    ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||| || || ||||||| |||||||||    
T  38837752 gtcacgagggactagacaacactagggactatcactgagaacttgacaacactgacaattattaaagcaaacactgaggtcttgacaacaccgacaattt 38837653  T
Q  101 tgactgaatacaaacaaatatttgattgaaattaatttcaaaacagctcacgctccaactttcccaacaactcttttttccgatcatcgagatgcttttc 200  Q
    |||| ||||||||||||||||| ||||| |||   ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||    
T  38837652 tgaccgaatacaaacaaatattggattgcaat---tttcaaaacagctcacgctccaacttttccaacaactcttttttccggtcatcgagatgctcttc 38837556  T
Q  201 gaaacttaactttacatacag 221  Q
    | || ||||||||||||||||    
T  38837555 ggaatttaactttacatacag 38837535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 17785317 - 17785537
Alignment:
Q  1 gtcacgagggactagacaacactagggactatcactgaggactagacaacactgacaattgttaaagcaaacactggggactagacaacatcgacaattt 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||| | ||||||||||||  ||||||||    
T  17785317 gtcacgggggactagacaacactagggactatcactgaggactagacaacactaataattattaaagcaaacactagagactagacaacactgacaattt 17785416  T
Q  101 tgactgaatacaaacaaatatttgattgaaattaatttcaaaacagctcacgctccaactttcccaacaactcttttttccgatcatcgagatgcttttc 200  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||  | ||||||||||   ||||||||||||| |||    
T  17785417 tgaccgaatacaaacaattatttgattgaaattaatttcaaaacagctcacgctccaagttttccagtagctcttttttctagtcatcgagatgctcttc 17785516  T
Q  201 gaaacttaactttacatacag 221  Q
    | |||||||||||||||||||    
T  17785517 ggaacttaactttacatacag 17785537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 17677378 - 17677157
Alignment:
Q  1 gtcacgagggactagacaacactagggactatcactgaggactagacaacactgacaattgttaaagcaaacactggggactagacaacatcgacaattt 100  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||| ||||||||  || ||||||||||  ||||||||    
T  17677378 gtcacgggggactagacaacactaggggctatcactgaggactagacaacattgacaattattaaaacaaacactaaggtctagacaacactgacaattt 17677279  T
Q  101 tgactgaatacaaacaaatatttgattgaaattaatttcaaaacagctcacgctccaactttcccaacaactctttttt-ccgatcatcgagatgctttt 199  Q
    |||| ||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||| |||||| ||||||||| ||| ||||||||||||| ||    
T  17677278 tgaccgaatacaaacaaatattggattgcaattaatttcaaaatagctcacgctccaacttttccaacagctcttttttcccggtcatcgagatgctctt 17677179  T
Q  200 cgaaacttaactttacatacag 221  Q
    || |||||||||||||||||||    
T  17677178 cggaacttaactttacatacag 17677157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 48 - 220
Target Start/End: Original strand, 51522343 - 51522515
Alignment:
Q  48 aacactgacaattgttaaagcaaacactggggactagacaacatcgacaattttgactgaatacaaacaaatatttgattgaaattaatttcaaaacagc 147  Q
    ||||||||||||| |||||||||||||||  ||||||||||||  |||||||||||| |||||||||||||||||||| |||||||||||||||||||||    
T  51522343 aacactgacaattattaaagcaaacactgtagactagacaacactgacaattttgaccgaatacaaacaaatatttgagtgaaattaatttcaaaacagc 51522442  T
Q  148 tcacgctccaactttcccaacaactcttttttccgatcatcgagatgcttttcgaaacttaactttacataca 220  Q
    ||||||||||||||| |||||| | |||| ||||| ||||||||||||| |||| ||||||||||||||||||    
T  51522443 tcacgctccaacttttccaacagcactttcttccggtcatcgagatgctcttcggaacttaactttacataca 51522515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 33 - 220
Target Start/End: Original strand, 8470333 - 8470520
Alignment:
Q  33 cactgaggactagacaacactgacaattgttaaagcaaacactggggactagacaacatcgacaattttgactgaatacaaacaaatatttgattgaaat 132  Q
    ||||| ||||||||||||||||| |||| |||||||||||| ||||||||||||||||  || |||||||||||||||||||||||||||| ||| ||||    
T  8470333 cactggggactagacaacactgataattattaaagcaaacattggggactagacaacactgataattttgactgaatacaaacaaatatttaattaaaat 8470432  T
Q  133 taatttcaaaacagctcacgctccaactttcccaacaactcttttttccgatcatcgagatgcttttcgaaacttaactttacataca 220  Q
    ||| ||  |||||||||| |||||||||||||||||| |||||  ||||| ||||||||||||| |||| |||||||||||| |||||    
T  8470433 taacttttaaacagctcaagctccaactttcccaacagctcttacttccggtcatcgagatgctcttcggaacttaactttagataca 8470520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 39 - 220
Target Start/End: Original strand, 48406419 - 48406600
Alignment:
Q  39 ggactagacaacactgacaattgttaaagcaaacactggggactagacaacatcgacaattttgactgaatacaaacaaatatttgattgaaattaattt 138  Q
    |||||||| || |||||||| | |||||||||||||| ||||||||||||||  || ||||||||||||||| |||||||||||||||| ||||||||||    
T  48406419 ggactagataatactgacaaatattaaagcaaacactcgggactagacaacactgataattttgactgaatataaacaaatatttgattaaaattaattt 48406518  T
Q  139 caaaacagctcacgctccaactttcccaacaactcttttttccgatcatcgagatgcttttcgaaacttaactttacataca 220  Q
      ||||||||||||||||||||| |||||||||||||| || || ||||||||||||| |||| |||||||||||| |||||    
T  48406519 tcaaacagctcacgctccaacttccccaacaactctttctttcggtcatcgagatgctcttcggaacttaactttagataca 48406600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 39 - 220
Target Start/End: Complemental strand, 48386227 - 48386046
Alignment:
Q  39 ggactagacaacactgacaattgttaaagcaaacactggggactagacaacatcgacaattttgactgaatacaaacaaatatttgattgaaattaattt 138  Q
    |||||||||||||||||||| | |||||||||||| | ||||||||||||||  || ||| |||||||||||||||||||||||||||| ||||||||||    
T  48386227 ggactagacaacactgacaaatattaaagcaaacagtcgggactagacaacactgataatgttgactgaatacaaacaaatatttgattaaaattaattt 48386128  T
Q  139 caaaacagctcacgctccaactttcccaacaactcttttttccgatcatcgagatgcttttcgaaacttaactttacataca 220  Q
      ||||||||||||||||||||| ||||||| ||| || ||||| ||||||||||||| ||||   |||||||||| |||||    
T  48386127 tcaaacagctcacgctccaacttccccaacagctcattcttccggtcatcgagatgctcttcgtcccttaactttagataca 48386046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 50 - 221
Target Start/End: Complemental strand, 18318805 - 18318635
Alignment:
Q  50 cactgacaattgttaaagcaaacactggggactagacaacatcgacaattttgactgaatacaaacaaatatttgattgaaattaatttcaaaacagctc 149  Q
    ||||||||||| |||||||||||| ||||||||||||||||  ||||||||| || |||||||||||||||||||||||||||||||||  ||| |||||    
T  18318805 cactgacaattattaaagcaaacagtggggactagacaacactgacaattttaaccgaatacaaacaaatatttgattgaaattaattttcaaatagctc 18318706  T
Q  150 acgctccaactttcccaacaactcttttttccgatcatcgagatgcttttcgaaacttaactttacatacag 221  Q
    ||||||||||||| |||| | |||||| ||||| ||||||||||||| |||| ||| |||||||| ||||||    
T  18318705 acgctccaacttttccaatagctctttcttccggtcatcgagatgctcttcggaac-taactttagatacag 18318635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 39 - 220
Target Start/End: Complemental strand, 2476171 - 2475990
Alignment:
Q  39 ggactagacaacactgacaattgttaaagcaaacactggggactagacaacatcgacaattttgactgaatacaaacaaatatttgattgaaattaattt 138  Q
    |||||||||||||||||||| | |||||||||||| | ||||||||||||||  || ||| |||||||||||||||||||||||||||| ||||||||||    
T  2476171 ggactagacaacactgacaaatattaaagcaaacagttgggactagacaacactgataatgttgactgaatacaaacaaatatttgattaaaattaattt 2476072  T
Q  139 caaaacagctcacgctccaactttcccaacaactcttttttccgatcatcgagatgcttttcgaaacttaactttacataca 220  Q
      ||||| ||||||||||||||| ||||||| ||| || ||||| ||||||||||||| ||||   |||||||||| |||||    
T  2476071 tcaaacaactcacgctccaacttccccaacagctcattcttccggtcatcgagatgctcttcgtcccttaactttagataca 2475990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 39 - 220
Target Start/End: Original strand, 31470277 - 31470458
Alignment:
Q  39 ggactagacaacactgacaattgttaaagcaaacactggggactagacaacatcgacaattttgactgaatacaaacaaatatttgattgaaattaattt 138  Q
    |||||||||||||||||||| | |||||||||||| | ||||||||||||||  || ||| |||||||||||||||||||||||||||| ||||||||||    
T  31470277 ggactagacaacactgacaaatattaaagcaaacagtcgggactagacaacactgataatgttgactgaatacaaacaaatatttgattaaaattaattt 31470376  T
Q  139 caaaacagctcacgctccaactttcccaacaactcttttttccgatcatcgagatgcttttcgaaacttaactttacataca 220  Q
      |||||||||||||||||||||  |||||| ||| || ||||| ||||||||||||| ||||   |||||||||| |||||    
T  31470377 tcaaacagctcacgctccaacttctccaacagctccttcttccggtcatcgagatgctcttcgtcccttaactttagataca 31470458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 39 - 220
Target Start/End: Original strand, 45241129 - 45241310
Alignment:
Q  39 ggactagacaacactgacaattgttaaagcaaacactggggactagacaacatcgacaattttgactgaatacaaacaaatatttgattgaaattaattt 138  Q
    |||||||||||||||||||| | |||||||||||| | ||||||||||||||  || ||| |||||||||||||||||||||||||||| ||||||||||    
T  45241129 ggactagacaacactgacaaatattaaagcaaacagtcgggactagacaacactgataatgttgactgaatacaaacaaatatttgattaaaattaattt 45241228  T
Q  139 caaaacagctcacgctccaactttcccaacaactcttttttccgatcatcgagatgcttttcgaaacttaactttacataca 220  Q
      |||||||||||||||||||||  |||||| ||| || ||||| ||||||||||||| ||||   |||||||||| |||||    
T  45241229 tcaaacagctcacgctccaacttctccaacagctccttcttccggtcatcgagatgctcttcgtcccttaactttagataca 45241310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 39 - 90
Target Start/End: Original strand, 8470261 - 8470312
Alignment:
Q  39 ggactagacaacactgacaattgttaaagcaaacactggggactagacaaca 90  Q
    |||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  8470261 ggactagacaacactgacaattattaaagcaaacactggggactaaacaaca 8470312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 33 - 90
Target Start/End: Original strand, 8470294 - 8470351
Alignment:
Q  33 cactgaggactagacaacactgacaattgttaaagcaaacactggggactagacaaca 90  Q
    ||||| |||||| |||||||||| |||| |||||||||||||||||||||||||||||    
T  8470294 cactggggactaaacaacactgataattattaaagcaaacactggggactagacaaca 8470351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 39 - 90
Target Start/End: Original strand, 31469996 - 31470047
Alignment:
Q  39 ggactagacaacactgacaattgttaaagcaaacactggggactagacaaca 90  Q
    |||||||||||||||||||||| |||||| ||||| ||||||||||||||||    
T  31469996 ggactagacaacactgacaattattaaagtaaacattggggactagacaaca 31470047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 39 - 90
Target Start/End: Original strand, 31470158 - 31470209
Alignment:
Q  39 ggactagacaacactgacaattgttaaagcaaacactggggactagacaaca 90  Q
    |||||||||||||||||||| | |||||||||||| | ||||||||||||||    
T  31470158 ggactagacaacactgacaaatattaaagcaaacagtcgggactagacaaca 31470209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 39 - 90
Target Start/End: Original strand, 31470197 - 31470248
Alignment:
Q  39 ggactagacaacactgacaattgttaaagcaaacactggggactagacaaca 90  Q
    ||||||||||||||||| |||| |||||||||||| || |||||||||||||    
T  31470197 ggactagacaacactgataattattaaagcaaacagtgaggactagacaaca 31470248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 384 - 431
Target Start/End: Original strand, 40037027 - 40037074
Alignment:
Q  384 tttgatttttcttcttctgttggttcagcaaaacctttctctgaaata 431  Q
    ||||||||||||||||||||| ||||||||||| |||||||| |||||    
T  40037027 tttgatttttcttcttctgtttgttcagcaaaatctttctctaaaata 40037074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 31 - 76
Target Start/End: Original strand, 51522304 - 51522349
Alignment:
Q  31 atcactgaggactagacaacactgacaattgttaaagcaaacactg 76  Q
    |||| ||||||| ||||||||||||||||| |||||||||||||||    
T  51522304 atcattgaggacgagacaacactgacaattattaaagcaaacactg 51522349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 90
Target Start/End: Original strand, 31470114 - 31470170
Alignment:
Q  36 tgaggactagacaacact--gacaattgttaaagcaaacactggggactagacaaca 90  Q
    ||||||||||||||||||  || |||| ||||||||||||||  |||||||||||||    
T  31470114 tgaggactagacaacactctgataattattaaagcaaacactacggactagacaaca 31470170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 90
Target Start/End: Original strand, 31470233 - 31470289
Alignment:
Q  36 tgaggactagacaacact--gacaattgttaaagcaaacactggggactagacaaca 90  Q
    ||||||||||||||||||  || |||| ||||||||||||||  |||||||||||||    
T  31470233 tgaggactagacaacactctgataattattaaagcaaacactacggactagacaaca 31470289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 90
Target Start/End: Original strand, 45241085 - 45241141
Alignment:
Q  36 tgaggactagacaacact--gacaattgttaaagcaaacactggggactagacaaca 90  Q
    ||||||||||||||||||  || |||| ||||||||||||||  |||||||||||||    
T  45241085 tgaggactagacaacactctgataattattaaagcaaacactacggactagacaaca 45241141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 90
Target Start/End: Complemental strand, 48386271 - 48386215
Alignment:
Q  36 tgaggactagacaacact--gacaattgttaaagcaaacactggggactagacaaca 90  Q
    ||||||||||||||||||  || |||| ||||||||||||||  |||||||||||||    
T  48386271 tgaggactagacaacactctgataattattaaagcaaacactacggactagacaaca 48386215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 90
Target Start/End: Complemental strand, 48386312 - 48386256
Alignment:
Q  36 tgaggactagacaacact--gacaattgttaaagcaaacactggggactagacaaca 90  Q
    ||||||||||||||||||  || |||| |||||||||||| || |||||||||||||    
T  48386312 tgaggactagacaacactctgataattattaaagcaaacagtgaggactagacaaca 48386256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 110; Significance: 3e-55; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 39 - 220
Target Start/End: Original strand, 22658938 - 22659119
Alignment:
Q  39 ggactagacaacactgacaattgttaaagcaaacactggggactagacaacatcgacaattttgactgaatacaaacaaatatttgattgaaattaattt 138  Q
    |||||||||||||||||||| | |||||||||||||| | ||||||||||||  || |||||||||||||||||||||||||||||||| ||||||||||    
T  22658938 ggactagacaacactgacaaatattaaagcaaacactcgagactagacaacactgataattttgactgaatacaaacaaatatttgattaaaattaattt 22659037  T
Q  139 caaaacagctcacgctccaactttcccaacaactcttttttccgatcatcgagatgcttttcgaaacttaactttacataca 220  Q
      |||||||||||||||||||   ||||||| |||||| ||||| ||||||||||||| ||||||||||||||||| |||||    
T  22659038 tcaaacagctcacgctccaacagccccaacagctctttcttccggtcatcgagatgctcttcgaaacttaactttagataca 22659119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 36 - 221
Target Start/End: Complemental strand, 32128276 - 32128091
Alignment:
Q  36 tgaggactagacaacactgacaattgttaaagcaaacactggggactagacaacatcgacaattttgactgaatacaaacaaatatttgattgaaattaa 135  Q
    ||||||||||||||||||||||||| |||||  ||||| |||  |||||||||||  | |||||||||| |||||||||||||||||||| |||||||||    
T  32128276 tgaggactagacaacactgacaattattaaaataaacattggaaactagacaacactggcaattttgaccgaatacaaacaaatatttgactgaaattaa 32128177  T
Q  136 tttcaaaacagctcacgctccaactttcccaacaactcttttttccgatcatcgagatgcttttcgaaacttaactttacatacag 221  Q
    |||||||||||||||||||||||||   |||||||| |||||||||| ||||| ||||||| |||| |||||||||||||||||||    
T  32128176 tttcaaaacagctcacgctccaactcctccaacaacgcttttttccggtcatcaagatgctcttcggaacttaactttacatacag 32128091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 40 - 221
Target Start/End: Original strand, 26814175 - 26814356
Alignment:
Q  40 gactagacaacactgacaattgttaaagcaaacactggggactagacaacatcgacaattttgactgaatacaaacaaatatttgattgaaattaatttc 139  Q
    |||||||||||||| ||| || |||||| ||||| ||||||||||||||||  ||||||||||||  ||||||||||||||||||| |||||||||||||    
T  26814175 gactagacaacactaacacttattaaagtaaacattggggactagacaacactgacaattttgaccaaatacaaacaaatatttgactgaaattaatttc 26814274  T
Q  140 aaaacagctcacgctccaactttcccaacaactcttttttccgatcatcgagatgcttttcgaaacttaactttacatacag 221  Q
    |||||||||||||||||||||   |||||| | |||||||||| ||||| ||||||| |||| |||||||||||||||||||    
T  26814275 aaaacagctcacgctccaactcctccaacagcgcttttttccggtcatcaagatgctcttcggaacttaactttacatacag 26814356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 39 - 220
Target Start/End: Original strand, 36520521 - 36520702
Alignment:
Q  39 ggactagacaacactgacaattgttaaagcaaacactggggactagacaacatcgacaattttgactgaatacaaacaaatatttgattgaaattaattt 138  Q
    |||||||||||||||||||| | |||||||||||| | ||||||||||||||  || ||| |||||||||||||||||||||||||||| ||||||||||    
T  36520521 ggactagacaacactgacaaatattaaagcaaacagtcgggactagacaacactgataatgttgactgaatacaaacaaatatttgattaaaattaattt 36520620  T
Q  139 caaaacagctcacgctccaactttcccaacaactcttttttccgatcatcgagatgcttttcgaaacttaactttacataca 220  Q
      ||||||||||||||||||||| ||||||| ||| || ||||| ||||||||||||| ||||   |||||||||| |||||    
T  36520621 tcaaacagctcacgctccaacttccccaacagctcattcttccggtcatcgagatgctcttcgtcccttaactttagataca 36520702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 39 - 220
Target Start/End: Original strand, 22193305 - 22193486
Alignment:
Q  39 ggactagacaacactgacaattgttaaagcaaacactggggactagacaacatcgacaattttgactgaatacaaacaaatatttgattgaaattaattt 138  Q
    |||||||||||||||||||| | |||||||||||| | ||||||||||||||  || ||| |||||||||||||||||||||||||||| ||||||||||    
T  22193305 ggactagacaacactgacaaatattaaagcaaacagtcgggactagacaacactgataatgttgactgaatacaaacaaatatttgattaaaattaattt 22193404  T
Q  139 caaaacagctcacgctccaactttcccaacaactcttttttccgatcatcgagatgcttttcgaaacttaactttacataca 220  Q
      |||||||||||||||||| ||  |||||| ||| || ||||| ||||||||||||| ||||   |||||||||| |||||    
T  22193405 tcaaacagctcacgctccaaattctccaacagctccttcttccggtcatcgagatgctcttcgtcccttaactttagataca 22193486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 26814097 - 26814186
Alignment:
Q  1 gtcacgagggactagacaacactagggactatcactgaggactagacaacactgacaattgttaaagcaaacactggggactagacaaca 90  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||| ||| ||||||||||||    
T  26814097 gtcacgggggactagacaacactagggactatcactgaggactagacaacactgacatttattaaagtaaacattggagactagacaaca 26814186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 32128389 - 32128300
Alignment:
Q  1 gtcacgagggactagacaacactagggactatcactgaggactagacaacactgacaattgttaaagcaaacactggggactagacaaca 90  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||| | ||||||||||||||    
T  32128389 gtcacgggggactagacaacactagggactatcactgaggactagacaacactgacatttattaaagtaaacattagggactagacaaca 32128300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 39 - 90
Target Start/End: Original strand, 22193078 - 22193129
Alignment:
Q  39 ggactagacaacactgacaattgttaaagcaaacactggggactagacaaca 90  Q
    |||||||||||||||||||||| |||||| ||||| ||||||||||||||||    
T  22193078 ggactagacaacactgacaattattaaagtaaacattggggactagacaaca 22193129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 39 - 90
Target Start/End: Original strand, 22193225 - 22193276
Alignment:
Q  39 ggactagacaacactgacaattgttaaagcaaacactggggactagacaaca 90  Q
    |||||||||||||||||||||| |||||| ||||| ||||||||||||||||    
T  22193225 ggactagacaacactgacaattattaaagtaaacattggggactagacaaca 22193276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 46 - 90
Target Start/End: Original strand, 22658622 - 22658666
Alignment:
Q  46 acaacactgacaattgttaaagcaaacactggggactagacaaca 90  Q
    |||||||||| |||| |||||||||||| ||||||||||||||||    
T  22658622 acaacactgataattattaaagcaaacagtggggactagacaaca 22658666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 90
Target Start/End: Original strand, 22658573 - 22658624
Alignment:
Q  39 ggactagacaacactgacaattgttaaagcaaacactggggactagacaaca 90  Q
    ||||||||||||||||| |||| ||||||||||||  | |||||||||||||    
T  22658573 ggactagacaacactgataattattaaagcaaacagggaggactagacaaca 22658624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 90
Target Start/End: Original strand, 22658654 - 22658705
Alignment:
Q  39 ggactagacaacactgacaattgttaaagcaaacactggggactagacaaca 90  Q
    |||||||||||||||||||| | |||||||||| | | ||||||||||||||    
T  22658654 ggactagacaacactgacaaatattaaagcaaatagtcgggactagacaaca 22658705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 90
Target Start/End: Original strand, 22658693 - 22658744
Alignment:
Q  39 ggactagacaacactgacaattgttaaagcaaacactggggactagacaaca 90  Q
    ||||||||||||||||| |||| |||||||||||| |  |||||||||||||    
T  22658693 ggactagacaacactgataattattaaagcaaacagtcaggactagacaaca 22658744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 90
Target Start/End: Original strand, 22658731 - 22658783
Alignment:
Q  38 aggactagacaacactgacaattgttaaagcaaacactggggactagacaaca 90  Q
    |||||||||||||||||| |||| |||||||||||| | | || |||||||||    
T  22658731 aggactagacaacactgataattattaaagcaaacagtcgtgagtagacaaca 22658783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 32128312 - 32128252
Alignment:
Q  39 ggactagacaacactgacaattgttaaagcaaacactggggactagacaacatcgacaatt 99  Q
    ||||||||||||||| ||| || |||||| ||||| || |||||||||||||  |||||||    
T  32128312 ggactagacaacactaacacttattaaagtaaacattgaggactagacaacactgacaatt 32128252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 105; Significance: 3e-52; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 40 - 220
Target Start/End: Original strand, 18641297 - 18641477
Alignment:
Q  40 gactagacaacactgacaattgttaaagcaaacactggggactagacaacatcgacaattttgactgaatacaaacaaatatttgattgaaattaatttc 139  Q
    ||||| |||||| |||||||| |||||  ||||| |||  |||||||||||  |||||||||||  ||||||||||||||||||||||||||||||||||    
T  18641297 gactaaacaacattgacaattattaaactaaacattggaaactagacaacactgacaattttgaacgaatacaaacaaatatttgattgaaattaatttc 18641396  T
Q  140 aaaacagctcacgctccaactttcccaacaactcttttttccgatcatcgagatgcttttcgaaacttaactttacataca 220  Q
    ||||||||||||||||||||||  |||||||||||||||| || ||||||||||||| |||| |||||||||||| |||||    
T  18641397 aaaacagctcacgctccaacttctccaacaactctttttttcggtcatcgagatgctcttcggaacttaactttatataca 18641477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 71 - 220
Target Start/End: Original strand, 8221233 - 8221382
Alignment:
Q  71 acactggggactagacaacatcgacaattttgactgaatacaaacaaatatttgattgaaattaatttcaaaacagctcacgctccaactttcccaacaa 170  Q
    ||||| ||||||||||||||  || |||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||||||||||||||||     
T  8221233 acacttgggactagacaacactgataattttgactgaatacaaacaaatatttgattaaaattaattttcaaacagctcacgctccaactttcccaacag 8221332  T
Q  171 ctcttttttccgatcatcgagatgcttttcgaaacttaactttacataca 220  Q
    |||||| ||||| ||||||||||||| |||| |||||||||||| |||||    
T  8221333 ctctttcttccggtcatcgagatgctcttcggaacttaactttagataca 8221382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 39 - 220
Target Start/End: Original strand, 34840500 - 34840681
Alignment:
Q  39 ggactagacaacactgacaattgttaaagcaaacactggggactagacaacatcgacaattttgactgaatacaaacaaatatttgattgaaattaattt 138  Q
    |||||||||||||||||||| | |||||||||||| | ||||||||||||||  || ||| |||||||||||||||||||||||||||| ||||||||||    
T  34840500 ggactagacaacactgacaaatattaaagcaaacagtcgggactagacaacactgataatgttgactgaatacaaacaaatatttgattaaaattaattt 34840599  T
Q  139 caaaacagctcacgctccaactttcccaacaactcttttttccgatcatcgagatgcttttcgaaacttaactttacataca 220  Q
      ||||||||||||||||||||| ||||||| ||| || ||||| ||||||||||||| ||||   |||||||||| |||||    
T  34840600 tcaaacagctcacgctccaacttccccaacagctcattcttccggtcatcgagatgctcttcgtcccttaactttagataca 34840681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 39 - 221
Target Start/End: Complemental strand, 24917630 - 24917448
Alignment:
Q  39 ggactagacaacactgacaattgttaaagcaaacactggggactagacaacatcgacaattttgactgaatacaaacaaatatttgattgaaattaattt 138  Q
    |||||||||||||||| ||||| |||||| ||||| |||  |||||||||||  ||||||||||||  || |||||||||||||||| ||||||||||||    
T  24917630 ggactagacaacactggcaattattaaagtaaacattggatactagacaacactgacaattttgaccaaacacaaacaaatatttgactgaaattaattt 24917531  T
Q  139 caaaacagctcacgctccaactttcccaacaactcttttttccgatcatcgagatgcttttcgaaacttaactttacatacag 221  Q
    |||||||||| || ||||||||   |||||| |||||||||||| ||||| ||||||| |||| |||||||||||||||||||    
T  24917530 caaaacagcttactctccaactcctccaacagctcttttttccggtcatcaagatgctcttcggaacttaactttacatacag 24917448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 39 - 220
Target Start/End: Complemental strand, 17959342 - 17959161
Alignment:
Q  39 ggactagacaacactgacaattgttaaagcaaacactggggactagacaacatcgacaattttgactgaatacaaacaaatatttgattgaaattaattt 138  Q
    |||||||||||||||||||| | |||||||||||| | ||||||||||||||  || ||| |||||||||||||||||||||||||||| ||||||||||    
T  17959342 ggactagacaacactgacaaatattaaagcaaacagtcgggactagacaacactgataatgttgactgaatacaaacaaatatttgattaaaattaattt 17959243  T
Q  139 caaaacagctcacgctccaactttcccaacaactcttttttccgatcatcgagatgcttttcgaaacttaactttacataca 220  Q
      |||||||||||||||||||||  |||||| ||| || ||||| ||||||||||||| ||||   |||||||||| |||||    
T  17959242 tcaaacagctcacgctccaacttctccaacagctccttcttccggtcatcgagatgctcttcgtcccttaactttagataca 17959161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 39 - 220
Target Start/End: Original strand, 633759 - 633940
Alignment:
Q  39 ggactagacaacactgacaattgttaaagcaaacactggggactagacaacatcgacaattttgactgaatacaaacaaatatttgattgaaattaattt 138  Q
    |||||||||||||||||||| | |||||||||||| | ||||||||||||||  || ||| |||||||||||||||||||||||||||| ||||||||||    
T  633759 ggactagacaacactgacaaatattaaagcaaacagtcgggactagacaacactgataatgttgactgaatacaaacaaatatttgattaaaattaattt 633858  T
Q  139 caaaacagctcacgctccaactttcccaacaactcttttttccgatcatcgagatgcttttcgaaacttaactttacataca 220  Q
      |||||||||||||||||| ||  |||||| ||| || ||||| ||||||||||||| ||||   |||||||||| |||||    
T  633859 tcaaacagctcacgctccaaattctccaacagctccttcttccggtcatcgagatgctcttcgtcccttaactttagataca 633940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 39 - 220
Target Start/End: Complemental strand, 6378474 - 6378293
Alignment:
Q  39 ggactagacaacactgacaattgttaaagcaaacactggggactagacaacatcgacaattttgactgaatacaaacaaatatttgattgaaattaattt 138  Q
    |||||||||||||||||||| | |||||||||||| | ||||||||||||||  || ||| |||||||||||||||||||||||||||| ||||||||||    
T  6378474 ggactagacaacactgacaaatattaaagcaaacagtcgggactagacaacactgataatgttgactgaatacaaacaaatatttgattaaaattaattt 6378375  T
Q  139 caaaacagctcacgctccaactttcccaacaactcttttttccgatcatcgagatgcttttcgaaacttaactttacataca 220  Q
      |||||||||||||||||| ||  |||||| ||| || ||||| ||||||||||||| ||||   |||||||||| |||||    
T  6378374 tcaaacagctcacgctccaaattctccaacagctccttcttccggtcatcgagatgctcttcgtcccttaactttagataca 6378293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 118 - 214
Target Start/End: Original strand, 24114211 - 24114307
Alignment:
Q  118 atatttgattgaaattaatttcaaaacagctcacgctccaactttcccaacaactcttttttccgatcatcgagatgcttttcgaaacttaacttta 214  Q
    |||||||||||||||||||||  |||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||| |||| ||||||||||||    
T  24114211 atatttgattgaaattaattttcaaacagctcacgctccaacttttccaacaactctttcttccggtcatcgagatgctcttcggaacttaacttta 24114307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 24917707 - 24917618
Alignment:
Q  1 gtcacgagggactagacaacactagggactatcactgaggactagacaacactgacaattgttaaagcaaacactggggactagacaaca 90  Q
    |||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||    
T  24917707 gtcacgggggactggacaacactagagactatcactgaggactagacaacactgacaattattaaagtaaacattggggactagacaaca 24917618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 8220864 - 8220924
Alignment:
Q  39 ggactagacaacactgacaattgttaaagcaaacactggggactagacaacatcgacaatt 99  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||  |||||||    
T  8220864 ggactagacaacactgacaattattaaagcaaacactggggactagacaacactgacaatt 8220924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 18641234 - 18641317
Alignment:
Q  16 acaacactagggactatcactgaggactagacaacactgacaattgttaaagcaaacactggggactagacaacatcgacaatt 99  Q
    ||||||||||||||||||||||||||||| |||||||||| |||| |||||| ||||| ||  ||||| ||||||| |||||||    
T  18641234 acaacactagggactatcactgaggactatacaacactgataattattaaagtaaacattgaagactaaacaacattgacaatt 18641317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 33 - 90
Target Start/End: Original strand, 8220897 - 8220954
Alignment:
Q  33 cactgaggactagacaacactgacaattgttaaagcaaacactggggactagacaaca 90  Q
    ||||| ||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  8220897 cactggggactagacaacactgacaattactaaagcaaacactggggactagacaaca 8220954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 33 - 90
Target Start/End: Original strand, 8220936 - 8220993
Alignment:
Q  33 cactgaggactagacaacactgacaattgttaaagcaaacactggggactagacaaca 90  Q
    ||||| ||||||||||||||||| |||| |||||||||||||||||||||||| ||||    
T  8220936 cactggggactagacaacactgataattattaaagcaaacactggggactagagaaca 8220993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 39 - 90
Target Start/End: Original strand, 633385 - 633436
Alignment:
Q  39 ggactagacaacactgacaattgttaaagcaaacactggggactagacaaca 90  Q
    |||||||||||||||||||||| |||||| ||||| ||||||||||||||||    
T  633385 ggactagacaacactgacaattattaaagtaaacattggggactagacaaca 633436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 39 - 90
Target Start/End: Original strand, 633532 - 633583
Alignment:
Q  39 ggactagacaacactgacaattgttaaagcaaacactggggactagacaaca 90  Q
    |||||||||||||||||||||| |||||| ||||| ||||||||||||||||    
T  633532 ggactagacaacactgacaattattaaagtaaacattggggactagacaaca 633583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 39 - 90
Target Start/End: Original strand, 633679 - 633730
Alignment:
Q  39 ggactagacaacactgacaattgttaaagcaaacactggggactagacaaca 90  Q
    |||||||||||||||||||||| |||||| ||||| ||||||||||||||||    
T  633679 ggactagacaacactgacaattattaaagtaaacattggggactagacaaca 633730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 39 - 90
Target Start/End: Complemental strand, 6378554 - 6378503
Alignment:
Q  39 ggactagacaacactgacaattgttaaagcaaacactggggactagacaaca 90  Q
    |||||||||||||||||||||| |||||| ||||| ||||||||||||||||    
T  6378554 ggactagacaacactgacaattattaaagtaaacattggggactagacaaca 6378503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 39 - 90
Target Start/End: Complemental strand, 6378701 - 6378650
Alignment:
Q  39 ggactagacaacactgacaattgttaaagcaaacactggggactagacaaca 90  Q
    |||||||||||||||||||||| |||||| ||||| ||||||||||||||||    
T  6378701 ggactagacaacactgacaattattaaagtaaacattggggactagacaaca 6378650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 39 - 90
Target Start/End: Original strand, 8221148 - 8221199
Alignment:
Q  39 ggactagacaacactgacaattgttaaagcaaacactggggactagacaaca 90  Q
    |||||| ||||||||||||||| ||||||||||||||||||| |||||||||    
T  8221148 ggactaaacaacactgacaattattaaagcaaacactggggattagacaaca 8221199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 99
Target Start/End: Original strand, 24114148 - 24114207
Alignment:
Q  40 gactagacaacactgacaattgttaaagcaaacactggggactagacaacatcgacaatt 99  Q
    |||| |||| ||||||||||| |||||||||||  ||||||||||||||||  |||||||    
T  24114148 gacttgacaccactgacaattattaaagcaaactgtggggactagacaacactgacaatt 24114207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 90
Target Start/End: Complemental strand, 17959386 - 17959330
Alignment:
Q  36 tgaggactagacaacact--gacaattgttaaagcaaacactggggactagacaaca 90  Q
    ||||||||||||||||||  || |||| ||||||||||||||  |||||||||||||    
T  17959386 tgaggactagacaacactctgataattattaaagcaaacactacggactagacaaca 17959330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 102; Significance: 2e-50; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 39 - 220
Target Start/End: Complemental strand, 29617573 - 29617392
Alignment:
Q  39 ggactagacaacactgacaattgttaaagcaaacactggggactagacaacatcgacaattttgactgaatacaaacaaatatttgattgaaattaattt 138  Q
    |||||||||||||||||||| | |||||||||||| | ||||||||||||||  || |||||||||| ||||||||||||||||||||| ||||||||||    
T  29617573 ggactagacaacactgacaaatattaaagcaaacagtcgggactagacaacactgataattttgactaaatacaaacaaatatttgattaaaattaattt 29617474  T
Q  139 caaaacagctcacgctccaactttcccaacaactcttttttccgatcatcgagatgcttttcgaaacttaactttacataca 220  Q
      ||||||||||||||||||||| ||||||| |||||| || || ||||||||||||| |||  |||||||||||| |||||    
T  29617473 tcaaacagctcacgctccaacttccccaacagctctttctttcggtcatcgagatgctcttcagaacttaactttagataca 29617392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 39 - 220
Target Start/End: Complemental strand, 30646908 - 30646727
Alignment:
Q  39 ggactagacaacactgacaattgttaaagcaaacactggggactagacaacatcgacaattttgactgaatacaaacaaatatttgattgaaattaattt 138  Q
    |||||||||||||||||||| | |||||||||||||| | ||||||||||||  || |||||||||||||||||||||||||||||||| ||||||||||    
T  30646908 ggactagacaacactgacaaatattaaagcaaacactcgtgactagacaacactgataattttgactgaatacaaacaaatatttgattaaaattaattt 30646809  T
Q  139 caaaacagctcacgctccaactttcccaacaactcttttttccgatcatcgagatgcttttcgaaacttaactttacataca 220  Q
      |||||||||||||||||||||| |||||| ||||||  | || ||||||||||||| |||  |||||||||||| |||||    
T  30646808 tcaaacagctcacgctccaacttttccaacagctctttcattcggtcatcgagatgctcttcataacttaactttagataca 30646727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 39 - 220
Target Start/End: Original strand, 4579098 - 4579279
Alignment:
Q  39 ggactagacaacactgacaattgttaaagcaaacactggggactagacaacatcgacaattttgactgaatacaaacaaatatttgattgaaattaattt 138  Q
    |||||||||||||||||||| | |||||||||||| | ||||||||||||||  || ||| |||||||||||||||||||||||||||| ||||||||||    
T  4579098 ggactagacaacactgacaaatattaaagcaaacagtcgggactagacaacactgataatgttgactgaatacaaacaaatatttgattaaaattaattt 4579197  T
Q  139 caaaacagctcacgctccaactttcccaacaactcttttttccgatcatcgagatgcttttcgaaacttaactttacataca 220  Q
      |||||||||||||||||||||  |||||| ||| || ||||| ||||||||||||| ||||   |||||||||| |||||    
T  4579198 tcaaacagctcacgctccaacttctccaacagctccttcttccggtcatcgagatgctcttcgtcccttaactttagataca 4579279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 39 - 220
Target Start/End: Complemental strand, 32974402 - 32974221
Alignment:
Q  39 ggactagacaacactgacaattgttaaagcaaacactggggactagacaacatcgacaattttgactgaatacaaacaaatatttgattgaaattaattt 138  Q
    |||||||||||||||||||| | |||||||||| | | ||||||||||||||  || ||| |||||||||||||||||||||||||||| ||||||||||    
T  32974402 ggactagacaacactgacaaatattaaagcaaatagtcgggactagacaacactgataatgttgactgaatacaaacaaatatttgattaaaattaattt 32974303  T
Q  139 caaaacagctcacgctccaactttcccaacaactcttttttccgatcatcgagatgcttttcgaaacttaactttacataca 220  Q
      ||||||||||||||||||||| ||||||| ||| || ||||| ||||||||||||| ||||   |||||||||| |||||    
T  32974302 tcaaacagctcacgctccaacttccccaacagctcattcttccggtcatcgagatgctcttcgtcccttaactttagataca 32974221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 39 - 220
Target Start/End: Original strand, 40890816 - 40890997
Alignment:
Q  39 ggactagacaacactgacaattgttaaagcaaacactggggactagacaacatcgacaattttgactgaatacaaacaaatatttgattgaaattaattt 138  Q
    |||||||||||||||||||| | |||||||||||| |  |||||||||||||  || ||| |||||||||||||||||||||||||||| ||||||||||    
T  40890816 ggactagacaacactgacaaatattaaagcaaacagtcaggactagacaacactgataatgttgactgaatacaaacaaatatttgattaaaattaattt 40890915  T
Q  139 caaaacagctcacgctccaactttcccaacaactcttttttccgatcatcgagatgcttttcgaaacttaactttacataca 220  Q
      ||||||||||||||||||||| ||||||| ||| || ||||| ||||||||||||| ||||   |||||||||| |||||    
T  40890916 tcaaacagctcacgctccaacttccccaacagctcattcttccggtcatcgagatgctcttcgtcccttaactttagataca 40890997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 39 - 220
Target Start/End: Original strand, 27944645 - 27944826
Alignment:
Q  39 ggactagacaacactgacaattgttaaagcaaacactggggactagacaacatcgacaattttgactgaatacaaacaaatatttgattgaaattaattt 138  Q
    |||||||||||||||||||| | |||||||||||| | || |||||||| ||  || ||| |||||||||||||||||||||||||||| ||||||||||    
T  27944645 ggactagacaacactgacaaatattaaagcaaacagtcggaactagacagcactgataatgttgactgaatacaaacaaatatttgattaaaattaattt 27944744  T
Q  139 caaaacagctcacgctccaactttcccaacaactcttttttccgatcatcgagatgcttttcgaaacttaactttacataca 220  Q
      ||||||||||||||||||||| ||||||| ||| || ||||| ||||||||||||| ||||   |||||||||| |||||    
T  27944745 tcaaacagctcacgctccaacttccccaacagctcattcttccggtcatcgagatgctcttcgtcccttaactttagataca 27944826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 39 - 90
Target Start/End: Complemental strand, 27406354 - 27406303
Alignment:
Q  39 ggactagacaacactgacaattgttaaagcaaacactggggactagacaaca 90  Q
    |||||||||||||||||||||| |||||||||||||  ||||||||||||||    
T  27406354 ggactagacaacactgacaattattaaagcaaacaccagggactagacaaca 27406303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 39 - 88
Target Start/End: Original strand, 4578977 - 4579026
Alignment:
Q  39 ggactagacaacactgacaattgttaaagcaaacactggggactagacaa 88  Q
    |||||||||||||||||||| | |||||||||||| ||||||||||||||    
T  4578977 ggactagacaacactgacaaatattaaagcaaacattggggactagacaa 4579026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 107 - 148
Target Start/End: Complemental strand, 34918198 - 34918157
Alignment:
Q  107 aatacaaacaaatatttgattgaaattaatttcaaaacagct 148  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  34918198 aatacaaacaaatatttgattgaaattaatttccaaacagct 34918157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 39 - 90
Target Start/End: Original strand, 27944483 - 27944534
Alignment:
Q  39 ggactagacaacactgacaattgttaaagcaaacactggggactagacaaca 90  Q
    |||||||||||||||||||| | |||||||||||| || |||||||||||||    
T  27944483 ggactagacaacactgacaaatattaaagcaaacagtgaggactagacaaca 27944534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 39 - 79
Target Start/End: Complemental strand, 27406315 - 27406275
Alignment:
Q  39 ggactagacaacactgacaattgttaaagcaaacactgggg 79  Q
    ||||||||||||||||| |||| ||||||||||||||||||    
T  27406315 ggactagacaacactgataattattaaagcaaacactgggg 27406275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 90
Target Start/End: Complemental strand, 29617775 - 29617728
Alignment:
Q  43 tagacaacactgacaattgttaaagcaaacactggggactagacaaca 90  Q
    ||||||||||||| |||| |||||||||||| | ||||||||||||||    
T  29617775 tagacaacactgataattattaaagcaaacagtcgggactagacaaca 29617728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 90
Target Start/End: Original strand, 4579054 - 4579110
Alignment:
Q  36 tgaggactagacaacact--gacaattgttaaagcaaacactggggactagacaaca 90  Q
    ||||||||||||||||||  || |||| ||||||||||||||  |||||||||||||    
T  4579054 tgaggactagacaacactctgataattattaaagcaaacactacggactagacaaca 4579110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 37 - 90
Target Start/End: Original strand, 4578934 - 4578989
Alignment:
Q  37 gaggactagacaacact--gacaattgttaaagcaaacactggggactagacaaca 90  Q
    |||||||||||||||||  || |||| ||||||||||||||  |||||||||||||    
T  4578934 gaggactagacaacactctgataattattaaagcaaacactacggactagacaaca 4578989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 99; Significance: 1e-48; HSPs: 3)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 43 - 221
Target Start/End: Original strand, 104888 - 105066
Alignment:
Q  43 tagacaacactgacaattgttaaagcaaacactggggactagacaacatcgacaattttgactgaatacaaacaaatatttgattgaaattaatttcaaa 142  Q
    |||||||||||||||||| |||||  ||||| |||| |||||||||||  |||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  104888 tagacaacactgacaattattaaaataaacattgggaactagacaacactgacaattttgaccgaatacaaacaaatatttgactgaaattaatttcaaa 104987  T
Q  143 acagctcacgctccaactttcccaacaactcttttttccgatcatcgagatgcttttcgaaacttaactttacatacag 221  Q
    ||||||||| ||||||||   |||||  | |||||||||| ||||| ||||||| |||| |||||||||||||||||||    
T  104988 acagctcacactccaactcctccaaccgcgcttttttccggtcatcaagatgctcttcggaacttaactttacatacag 105066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 104768 - 104857
Alignment:
Q  1 gtcacgagggactagacaacactagggactatcactgaggactagacaacactgacaattgttaaagcaaacactggggactagacaaca 90  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||| ||||||||||||||||    
T  104768 gtcacgggggactagacaacactagggactatcactgaggactagacaacactgacatttattaaagtaaacattggggactagacaaca 104857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 104845 - 104905
Alignment:
Q  39 ggactagacaacactgacaattgttaaagcaaacactggggactagacaacatcgacaatt 99  Q
    ||||||||||||||| ||| || |||||| ||||| |||||| |||||||||  |||||||    
T  104845 ggactagacaacactaacacttattaaagtaaacattggggattagacaacactgacaatt 104905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0658 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: scaffold0658
Description:

Target: scaffold0658; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 31 - 149
Target Start/End: Complemental strand, 7136 - 7019
Alignment:
Q  31 atcactgaggactagacaacactgacaattgttaaagcaaacactggggactagacaacatcgacaattttgactgaatacaaacaaatatttgattgaa 130  Q
    |||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||  |||||||||||| | |||||||||| ||||||||||||    
T  7136 atcactgaggactatacaacattgacaattattaaagcaaacactggggactagacaacactgacaattttgaccg-atacaaacaactatttgattgaa 7038  T
Q  131 attaatttcaaaacagctc 149  Q
    ||||||||| |||||||||    
T  7037 attaatttccaaacagctc 7019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 40 - 196
Target Start/End: Complemental strand, 167384 - 167228
Alignment:
Q  40 gactagacaacactgacaattgttaaagcaaacactggggactagacaacatcgacaattttgactgaatacaaacaaatatttgattgaaattaatttc 139  Q
    |||| |||| ||||||||||| ||| ||||||||||||||||| ||||  |  ||||| |||||| |||| |||||||||| ||||||||||||||||||    
T  167384 gacttgacatcactgacaattattagagcaaacactggggacttgacactactgacaagtttgaccgaatgcaaacaaatacttgattgaaattaatttc 167285  T
Q  140 aaaacagctcacgctccaactttcccaacaactcttttttccgatcatcgagatgct 196  Q
     ||||| |||  |  |||||||| ||||||||| ||| ||||| ||||||| |||||    
T  167284 caaacaactcttggcccaacttttccaacaactttttcttccggtcatcgaaatgct 167228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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