View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13067_high_7 (Length: 459)
Name: NF13067_high_7
Description: NF13067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13067_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 25 - 447
Target Start/End: Complemental strand, 29946545 - 29946122
Alignment:
| Q |
25 |
ttaacttcgtgctgaaactgttatattcatcttgaatatatattctatcgatggctactgattacgtaaaacagcgatttgttcaaattagtatattaca |
124 |
Q |
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| T |
29946545 |
ttaacttcgtgctgaaactgttatattcatcttgaatatatattctatcgatggctactgattacataaaacagcgatttgttcaaattagtatgttaca |
29946446 |
T |
|
| Q |
125 |
taatagcactatagcgcctgcctatgtaactgctatttgacaacactttttattaatcccgtgttgcataataaaagtggtttgttcaaattatgttaag |
224 |
Q |
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| T |
29946445 |
taatagcactatagcgcctgcctatgtaactgctatttggcaacactttttattaatcccgtgttgcataataaaagtggtttgttcaaattatgttaag |
29946346 |
T |
|
| Q |
225 |
ctatagccgctattttgacaacattgattcgaagtcgctgcagttattttcttttaactttgtatcagtgtaggatatgt-ttttatatattgctgattt |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
29946345 |
ctatagccgctattttgacaacattgattcgaagtcgctgcagttattttcttttaactttgtatcagtgtaggatatgttttttatatattgctgattt |
29946246 |
T |
|
| Q |
324 |
gagttccgaatttgtagtgttccacagctgaagactgtcgttcagttacttgcaaatatggaaagcagccagcttagttcactatcccgaacccatgttc |
423 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
29946245 |
gagttcaaaatttgtagtgttccacagctgaagactgtcgttcagttacttgcaaatatggaaagtagccagcttagttcactatcccgaacccatgttc |
29946146 |
T |
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| Q |
424 |
ttgagaaggtatggatatgatgat |
447 |
Q |
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|||||||||||||||||||||||| |
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| T |
29946145 |
ttgagaaggtatggatatgatgat |
29946122 |
T |
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