View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13067_low_17 (Length: 329)
Name: NF13067_low_17
Description: NF13067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13067_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 308; Significance: 1e-173; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 3 - 314
Target Start/End: Original strand, 4145359 - 4145670
Alignment:
| Q |
3 |
gaagggtttgtgaaactatcccagattgttgctccagaattgatgtctcttagaatcaagttccctgcatcatcaagtttagctgttgaatttgttgaag |
102 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4145359 |
gaagggtgtgtgaaactatcccagattgttgctccagaattgatgtctcttagaatcaagttccctgcatcatcaagtttagctgttgaatttgttgaag |
4145458 |
T |
|
| Q |
103 |
atgaaatgtttgttgaccaaatgatgctgccatttggtttgttcaaaattacaagatttccatttttgtgaattgtgacaattccatttgaatctttgag |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4145459 |
atgaaatgtttgttgaccaaatgatgctgccatttggtttgttcaaaattacaagatttccatttttgtgaattgtgacaattccatttgaatctttgag |
4145558 |
T |
|
| Q |
203 |
tggttgatctctgtttgcaatccatatgttgttggtctcattgatgtaccaaattcctaagtaacggttgggcgaatttaatgggctgaaaaatcctagc |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4145559 |
tggttgatctctgtttgcaatccatatgttgttggtctcattgatgtaccaaattcctaagtaacggttgggcgaatttaatgggctgaaaaatcctagc |
4145658 |
T |
|
| Q |
303 |
ttgaggtctgtg |
314 |
Q |
| |
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|||||||||||| |
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| T |
4145659 |
ttgaggtctgtg |
4145670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 5 - 314
Target Start/End: Original strand, 4134559 - 4134868
Alignment:
| Q |
5 |
agggtttgtgaaactatcccagattgttgctccagaattgatgtctcttagaatcaagttccctgcatcatcaagtttagctgttgaatttgttgaagat |
104 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4134559 |
agggtgtgtgaaactatcccagattgttgctccagaattgatgtctcttagaatcaagttccctgcatcatcaagtttagctgttgaatttgttgaagat |
4134658 |
T |
|
| Q |
105 |
gaaatgtttgttgaccaaatgatgctgccatttggtttgttcaaaattacaagatttccatttttgtgaattgtgacaattccatttgaatctttgagtg |
204 |
Q |
| |
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|||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
4134659 |
gaaatgtttgttgaccaaatgatgataccatttggtttgttcaatattacaagatttccatctttgtgaattgtgacaattccatttgaatctttgagtg |
4134758 |
T |
|
| Q |
205 |
gttgatctctgtttgcaatccatatgttgttggtctcattgatgtaccaaattcctaagtaacggttgggcgaatttaatgggctgaaaaatcctagctt |
304 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
4134759 |
gttgatctctgtttgcaatccatatgttgttggtctcattgatgtaccaaattcctaagtaacggttgttcgaatttaatgggctgaaaaatcctagctt |
4134858 |
T |
|
| Q |
305 |
gaggtctgtg |
314 |
Q |
| |
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|||||||||| |
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| T |
4134859 |
gaggtctgtg |
4134868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 5 - 306
Target Start/End: Original strand, 4124014 - 4124315
Alignment:
| Q |
5 |
agggtttgtgaaactatcccagattgttgctccagaattgatgtctcttagaatcaagttccctgcatcatcaagtttagctgttgaatttgttgaagat |
104 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||| |||| ||||| | ||||||||| |||| |||| |||||| |||||||||||||||||||||| |
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| T |
4124014 |
agggtgtgtgaaactatcccagattgttgctccagaactgatatctctcaaaatcaagtttcctgaatcagcaagttgagctgttgaatttgttgaagat |
4124113 |
T |
|
| Q |
105 |
gaaatgtttgttgaccaaatgatgctgccatttggtttgttcaaaattacaagatttccatttttgtgaattgtgacaattccatttgaatctttgagtg |
204 |
Q |
| |
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||||||||||||||||| || || ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
4124114 |
gaaatgtttgttgaccatataataacaccatttggtttgttcaatattacaagatttccatttttgtgaattgtgactattccatttgaatctttgagtg |
4124213 |
T |
|
| Q |
205 |
gttgatctctgtttgcaatccatatgttgttggtctcattgatgtaccaaattcctaagtaacggttgggcgaatttaatgggctgaaaaatcctagctt |
304 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
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| T |
4124214 |
gttgatctctgtttgcaatccatatattgttggtctcattgatgtaccaaattcctaggtaacggttggttgaatttaatgggctgaaaaatcctagctt |
4124313 |
T |
|
| Q |
305 |
ga |
306 |
Q |
| |
|
|| |
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|
| T |
4124314 |
ga |
4124315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 5 - 306
Target Start/End: Original strand, 4153364 - 4153665
Alignment:
| Q |
5 |
agggtttgtgaaactatcccagattgttgctccagaattgatgtctcttagaatcaagttccctgcatcatcaagtttagctgttgaatttgttgaagat |
104 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| ||| |||| ||||| | ||||||||| |||| |||| |||||| |||||||||||||||||||||| |
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|
| T |
4153364 |
agggtgtgtgaaactatcccagattgttgctccggaactgatatctctcaaaatcaagtttcctgaatcagcaagttgagctgttgaatttgttgaagat |
4153463 |
T |
|
| Q |
105 |
gaaatgtttgttgaccaaatgatgctgccatttggtttgttcaaaattacaagatttccatttttgtgaattgtgacaattccatttgaatctttgagtg |
204 |
Q |
| |
|
||||||||||||||||| || || ||||||||||||||||| |||| || |||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
4153464 |
gaaatgtttgttgaccatataataacaccatttggtttgttcaatattataaaatttccatctttgtgaattgtgacaattccatttgaatctttgagtg |
4153563 |
T |
|
| Q |
205 |
gttgatctctgtttgcaatccatatgttgttggtctcattgatgtaccaaattcctaagtaacggttgggcgaatttaatgggctgaaaaatcctagctt |
304 |
Q |
| |
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||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
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| T |
4153564 |
gttgatctctgtttgcaatccatatattgttggtcttattgatgtaccaaattcctaggtaacggttggttgaatttaatgggctgaaaaatcctagctt |
4153663 |
T |
|
| Q |
305 |
ga |
306 |
Q |
| |
|
|| |
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|
| T |
4153664 |
ga |
4153665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 12 - 306
Target Start/End: Original strand, 4163724 - 4164024
Alignment:
| Q |
12 |
gtgaaactatcccagattgttgctccagaattgatgtctcttagaatcaagttccctgcatcatcaagtttagctgttgaatttgttgaa----ga--tg |
105 |
Q |
| |
|
|||||||||||||| ||||||| || |||||||||||| |||||||||||||| ||| ||||| |||||| |||||| |||||| ||||| || || |
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|
| T |
4163724 |
gtgaaactatcccaaattgttgatctagaattgatgtcacttagaatcaagtttcctacatcaacaagttgagctgtggaatttattgaatttggacttg |
4163823 |
T |
|
| Q |
106 |
aaatgtttgttgaccaaatgatgctgccatttggtttgttcaaaattacaagatttccatttttgtgaattgtgacaattccatttgaatctttgagtgg |
205 |
Q |
| |
|
||||| ||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |
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|
| T |
4163824 |
aaatgcttgttgaccaaatgatgctaccattttctttgttcaatattacaagatttccatttttgtgaattgtgactattccatttgaatccttgagtgg |
4163923 |
T |
|
| Q |
206 |
ttgatctctgtttgcaatccatatgttgttggtctcattgatgtaccaaattcctaagtaacggttgggcgaatttaatgggctgaaaaatcctagcttg |
305 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |
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| T |
4163924 |
ttgatctctgtttgcaatccatatattgttggtctcattgatgtaccaaattcctaggtaacggttggttgaatttaatgggctgaaaaatcctagcttg |
4164023 |
T |
|
| Q |
306 |
a |
306 |
Q |
| |
|
| |
|
|
| T |
4164024 |
a |
4164024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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