View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13067_low_18 (Length: 328)
Name: NF13067_low_18
Description: NF13067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13067_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 303; Significance: 1e-170; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 36536310 - 36536000
Alignment:
| Q |
1 |
cagagttggtaattggtttcacctatccaggaaagccactagctaatgtagctttcaaaacatatggccataccagcatggtacaagcacttggttttct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
36536310 |
cagagttggtaattggtttcacctatccaggaaagccactagctaatgtagctttcaaaacatatggccatacgagcatggtacaagcacttggttttct |
36536211 |
T |
|
| Q |
101 |
cggtgacttcaaattaggccactatatgaaaattccaccaaaatcaatgtttattgtgcagctagtcggcactgtagtttcttcgtctgtccactttgga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
36536210 |
cggtgacttcaaattaggccactatatgaaaattccaccaaaatcaatgtttattgtgcagctagtcggcactgtagtttctttgtctgtccactttgga |
36536111 |
T |
|
| Q |
201 |
acagcatggtggcttctaacatctatagagaacatatgtgatgaatcgttgttgccgaaaggtagtccttggacgtgtcctggtgatgatgcattttaca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36536110 |
acagcatggtggcttctaacatctatagagaacatatgtgatgaatcgttgttgccgaaaggtagtccttggacgtgtcctggtgatgatgcattttaca |
36536011 |
T |
|
| Q |
301 |
atgcttccatt |
311 |
Q |
| |
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||||||||||| |
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| T |
36536010 |
atgcttccatt |
36536000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 36523865 - 36523559
Alignment:
| Q |
1 |
cagagttggtaattggtttcacctatccaggaaagccactagctaatgtagctttcaaaacatatggccataccagcatggtacaagcacttggttttct |
100 |
Q |
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||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||| || ||||| |
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| T |
36523865 |
cagagttggtaattggtttcatctatcctggaaagccacttgctaatgtagctttcaaaacatatggccacatcagcatggtacaagcactagggtttct |
36523766 |
T |
|
| Q |
101 |
cggtgacttcaaattaggccactatatgaaaattccaccaaaatcaatgtttattgtgcagctagtcggcactgtagtttcttcgtctgtccactttgga |
200 |
Q |
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| T |
36523765 |
tgaagacttcaaattaggccattatatgaaaattccaccaaaatcaatgttcattgtgcagctagtaggcactgtagtttcttcatctgtccactttgga |
36523666 |
T |
|
| Q |
201 |
acagcatggtggcttctaacatctatagagaacatatgtgatgaatcgttgttgccgaaaggtagtccttggacgtgtcctggtgatgatgcattttaca |
300 |
Q |
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|||||||||||||||||||| ||||| |||||||||||||||||||| || ||||| ||||| ||||||||||| |||||||||||||||| |||||||| |
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| T |
36523665 |
acagcatggtggcttctaacttctatcgagaacatatgtgatgaatcattattgccaaaaggaagtccttggacatgtcctggtgatgatgtattttaca |
36523566 |
T |
|
| Q |
301 |
atgcttc |
307 |
Q |
| |
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||||||| |
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| T |
36523565 |
atgcttc |
36523559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 36530698 - 36530392
Alignment:
| Q |
1 |
cagagttggtaattggtttcacctatccaggaaagccactagctaatgtagctttcaaaacatatggccataccagcatggtacaagcacttggttttct |
100 |
Q |
| |
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||||||| ||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |
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| T |
36530698 |
cagagttagtaattggtttcatctatccaggaaagccgcttgctaatgtagctttcaaaacatatggccatatcagtatggtacaagcacttggttttct |
36530599 |
T |
|
| Q |
101 |
cggtgacttcaaattaggccactatatgaaaattccaccaaaatcaatgtttattgtgcagctagtcggcactgtagtttcttcgtctgtccactttgga |
200 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| || || ||||| |||||| |||| ||||| ||||||||| |
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| T |
36530598 |
tggtgacttcaaattaggccactatatgaaaattgcaccaaaatcaatgttcattgtgcaacttgtaggcacagtagttgcttcatctgttcactttgga |
36530499 |
T |
|
| Q |
201 |
acagcatggtggcttctaacatctatagagaacatatgtgatgaatcgttgttgccgaaaggtagtccttggacgtgtcctggtgatgatgcattttaca |
300 |
Q |
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|| ||||||||||||||||||||||| |||||||||||||||||||| || ||||| ||||||||||||||||| |||||||||||||||| |||||||| |
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| T |
36530498 |
accgcatggtggcttctaacatctattgagaacatatgtgatgaatcattattgccaaaaggtagtccttggacatgtcctggtgatgatgtattttaca |
36530399 |
T |
|
| Q |
301 |
atgcttc |
307 |
Q |
| |
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||||||| |
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| T |
36530398 |
atgcttc |
36530392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 30 - 307
Target Start/End: Original strand, 42059552 - 42059829
Alignment:
| Q |
30 |
ggaaagccactagctaatgtagctttcaaaacatatggccataccagcatggtacaagcacttggttttctcggtgacttcaaattaggccactatatga |
129 |
Q |
| |
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|||||||| || ||||||||||| ||||| || ||||| | | |||||||| ||| |||||| |||| || | |||||||||||||| ||||| |||| |
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| T |
42059552 |
ggaaagcctcttgctaatgtagccttcaagacttatggatacatcagcatggcacaggcacttagtttccttgaagacttcaaattaggacactacatga |
42059651 |
T |
|
| Q |
130 |
aaattccaccaaaatcaatgtttattgtgcagctagtcggcactgtagtttcttcgtctgtccactttggaacagcatggtggcttctaacatctataga |
229 |
Q |
| |
|
||||||| |||||| | ||||| || || || | || || ||| | ||| |||| ||| |||| | ||||||||||||||||||||| |||| |
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| T |
42059652 |
aaattcctccaaaagctatgttcatagtacaattggtaggaactttggttgcttcaagtgtatacttcagcacagcatggtggcttctaacaactattcc |
42059751 |
T |
|
| Q |
230 |
gaacatatgtgatgaatcgttgttgccgaaaggtagtccttggacgtgtcctggtgatgatgcattttacaatgcttc |
307 |
Q |
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||||||||||||| ||| ||||||| | |||||||| ||||| |||||||||||||||| |||||||||||||| |
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| T |
42059752 |
aaacatatgtgatgcatcaatgttgcctgagggtagtccatggacttgtcctggtgatgatgtgttttacaatgcttc |
42059829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 105 - 307
Target Start/End: Original strand, 42083504 - 42083706
Alignment:
| Q |
105 |
gacttcaaattaggccactatatgaaaattccaccaaaatcaatgtttattgtgcagctagtcggcactgtagtttcttcgtctgtccactttggaacag |
204 |
Q |
| |
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|||||||||||||| ||||| ||||||||||| |||||||| ||||| || ||||| | || || ||| | |||||||| ||| ||| | |||| |
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| T |
42083504 |
gacttcaaattaggacactacatgaaaattcctccaaaatctatgttcatagtgcaattggtaggaactttggtttcttcaagtgtatgcttcagcacag |
42083603 |
T |
|
| Q |
205 |
catggtggcttctaacatctatagagaacatatgtgatgaatcgttgttgccgaaaggtagtccttggacgtgtcctggtgatgatgcattttacaatgc |
304 |
Q |
| |
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||||||||||||||||| |||| ||||||| ||| |||| ||||||| | |||||||| ||||| |||||||||||||| | ||||||||||| |
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| T |
42083604 |
catggtggcttctaacaactattccacacatatgcgataaatcaatgttgccagatggtagtccatggacttgtcctggtgatgaggttttttacaatgc |
42083703 |
T |
|
| Q |
305 |
ttc |
307 |
Q |
| |
|
||| |
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| T |
42083704 |
ttc |
42083706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 307
Target Start/End: Original strand, 42074849 - 42075126
Alignment:
| Q |
30 |
ggaaagccactagctaatgtagctttcaaaacatatggccataccagcatggtacaagcacttggttttctcggtgacttcaaattaggccactatatga |
129 |
Q |
| |
|
|||||||| || || |||||||| ||||| || ||||| | | |||||||| ||| |||||| |||| || |||||||||||||| | ||| |||| |
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| T |
42074849 |
ggaaagcctcttgccaatgtagccttcaagacttatggatacatcagcatggcacaggcacttagtttccttcaagacttcaaattaggtctctacatga |
42074948 |
T |
|
| Q |
130 |
aaattccaccaaaatcaatgtttattgtgcagctagtcggcactgtagtttcttcgtctgtccactttggaacagcatggtggcttctaacatctataga |
229 |
Q |
| |
|
||||||| |||||||| ||||| || || ||| | || || ||| | ||| |||| ||| |||| || |||||||||||||||||||| |||| |
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| T |
42074949 |
aaattcctccaaaatctatgttcatagtacagttggtaggaactttggttgcttcaagtgtatacttcggcacagcatggtggcttctaacgactattcc |
42075048 |
T |
|
| Q |
230 |
gaacatatgtgatgaatcgttgttgccgaaaggtagtccttggacgtgtcctggtgatgatgcattttacaatgcttc |
307 |
Q |
| |
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||||||| ||| |||| ||||||| | |||||||| ||||| ||||||||||| || | |||||||||||||| |
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| T |
42075049 |
acacatatgcgataaatcaatgttgccagatggtagtccatggacttgtcctggtgacgaggttttttacaatgcttc |
42075126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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