View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13067_low_27 (Length: 226)

Name: NF13067_low_27
Description: NF13067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13067_low_27
NF13067_low_27
[»] scaffold0006 (4 HSPs)
scaffold0006 (86-217)||(64555-64686)
scaffold0006 (2-60)||(64469-64527)
scaffold0006 (100-193)||(152017-152110)
scaffold0006 (2-54)||(151958-152009)
[»] chr4 (8 HSPs)
chr4 (86-217)||(1944714-1944845)
chr4 (86-180)||(15650645-15650739)
chr4 (106-193)||(3839248-3839335)
chr4 (2-60)||(1944873-1944931)
chr4 (101-193)||(26870166-26870259)
chr4 (2-60)||(15650560-15650618)
chr4 (2-60)||(3839171-3839229)
chr4 (2-60)||(26870105-26870163)
[»] chr2 (12 HSPs)
chr2 (86-217)||(10821127-10821258)
chr2 (100-193)||(14753445-14753538)
chr2 (100-193)||(17025927-17026021)
chr2 (100-193)||(17092112-17092206)
chr2 (2-60)||(10821048-10821106)
chr2 (2-60)||(17026024-17026082)
chr2 (100-193)||(16884059-16884152)
chr2 (100-193)||(17041749-17041842)
chr2 (5-60)||(17092209-17092264)
chr2 (3-60)||(16884155-16884212)
chr2 (3-60)||(17041845-17041902)
chr2 (2-60)||(14753540-14753598)
[»] chr5 (11 HSPs)
chr5 (2-182)||(12702136-12702313)
chr5 (2-182)||(9809896-9810072)
chr5 (2-182)||(7863602-7863780)
chr5 (86-182)||(12763232-12763329)
chr5 (111-193)||(3210071-3210153)
chr5 (100-193)||(290742-290835)
chr5 (100-193)||(9702518-9702612)
chr5 (2-60)||(12763152-12763210)
chr5 (2-60)||(3209999-3210057)
chr5 (2-52)||(290845-290895)
chr5 (2-60)||(9702616-9702674)
[»] chr3 (14 HSPs)
chr3 (2-182)||(26035889-26036064)
chr3 (100-193)||(35437067-35437160)
chr3 (101-193)||(11383411-11383503)
chr3 (107-193)||(12157851-12157937)
chr3 (100-193)||(16496189-16496282)
chr3 (100-189)||(36164965-36165054)
chr3 (100-193)||(54792827-54792920)
chr3 (86-182)||(15315424-15315520)
chr3 (2-60)||(35437162-35437220)
chr3 (1-60)||(36164904-36164963)
chr3 (2-60)||(12157785-12157843)
chr3 (2-54)||(16496290-16496341)
chr3 (2-56)||(54792768-54792821)
chr3 (11-50)||(15315353-15315392)
[»] chr6 (8 HSPs)
chr6 (2-182)||(8614872-8615051)
chr6 (86-182)||(5753262-5753358)
chr6 (86-182)||(33318824-33318920)
chr6 (100-193)||(1932151-1932244)
chr6 (2-60)||(4425815-4425873)
chr6 (100-193)||(4425720-4425813)
chr6 (2-60)||(1932247-1932305)
chr6 (2-60)||(33318959-33319017)
[»] chr7 (12 HSPs)
chr7 (100-193)||(9226157-9226250)
chr7 (86-182)||(34130539-34130635)
chr7 (100-193)||(38434415-38434509)
chr7 (2-59)||(42244657-42244714)
chr7 (91-193)||(42244713-42244815)
chr7 (101-193)||(42996752-42996845)
chr7 (2-60)||(9226097-9226155)
chr7 (2-60)||(38434354-38434412)
chr7 (2-60)||(42996848-42996906)
chr7 (130-193)||(4481283-4481346)
chr7 (114-192)||(19123052-19123129)
chr7 (108-192)||(19124047-19124131)
[»] scaffold0249 (2 HSPs)
scaffold0249 (86-182)||(25082-25178)
scaffold0249 (2-60)||(24994-25052)
[»] chr8 (14 HSPs)
chr8 (86-180)||(2961168-2961262)
chr8 (100-193)||(39204675-39204768)
chr8 (98-193)||(29434083-29434178)
chr8 (101-193)||(39445065-39445158)
chr8 (2-60)||(2961083-2961141)
chr8 (100-193)||(23626193-23626287)
chr8 (101-193)||(12250049-12250142)
chr8 (1-60)||(39204771-39204830)
chr8 (2-60)||(12249988-12250046)
chr8 (2-60)||(23626132-23626190)
chr8 (2-60)||(29434181-29434239)
chr8 (2-60)||(39445161-39445219)
chr8 (100-193)||(41907822-41907915)
chr8 (2-60)||(41907917-41907975)
[»] scaffold0051 (2 HSPs)
scaffold0051 (100-193)||(61525-61618)
scaffold0051 (2-60)||(61620-61678)
[»] chr1 (10 HSPs)
chr1 (100-193)||(12714785-12714878)
chr1 (100-193)||(28631620-28631714)
chr1 (100-193)||(13662255-13662348)
chr1 (100-193)||(28565565-28565658)
chr1 (2-60)||(15317553-15317611)
chr1 (2-56)||(28565506-28565559)
chr1 (2-60)||(28631718-28631776)
chr1 (100-161)||(15317490-15317551)
chr1 (2-56)||(12714884-12714937)
chr1 (2-54)||(13662196-13662247)
[»] scaffold0376 (2 HSPs)
scaffold0376 (86-182)||(10945-11041)
scaffold0376 (2-60)||(10857-10915)
[»] scaffold0088 (2 HSPs)
scaffold0088 (101-193)||(52830-52923)
scaffold0088 (2-60)||(52769-52827)


Alignment Details
Target: scaffold0006 (Bit Score: 116; Significance: 4e-59; HSPs: 4)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 86 - 217
Target Start/End: Original strand, 64555 - 64686
Alignment:
Q  86 agggattaaaatagaaaaatctttgttataaaggagaaatgagcaaattaaggcaaataatcgcatttttctaagaaattattgtcgttcataaatgtga 185  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||||||    
T  64555 agggattaaaatagaaaaatctttgttataaaggagaaatgagcaaattaaggcaaatagccgcatttttctaagaaattgttgtcgttcataaatgtga 64654  T
Q  186 aaatcaagtaggaaaaaagcatgttctatttt 217  Q
    |||||||||||||||| |||||||||||||||    
T  64655 aaatcaagtaggaaaagagcatgttctatttt 64686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 64469 - 64527
Alignment:
Q  2 aaattaatgaatattgcacaaactcggatattctaaattaatcacttttactgtatttt 60  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  64469 aaattaatgaatattgcacaaactcggatattctaaattaatcacttttactgtatttt 64527  T

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Target: scaffold0006; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 100 - 193
Target Start/End: Original strand, 152017 - 152110
Alignment:
Q  100 aaaaatctttgttataaaggagaaatgagcaaattaaggcaaataatcgcatttttctaagaaattattgtcgttcataaatgtgaaaatcaag 193  Q
    ||||| ||||||||||||||||||||||||||||||||| ||| |   |||||||| || |||||| |||||||||||||||||||||||||||    
T  152017 aaaaaactttgttataaaggagaaatgagcaaattaagggaaaaagctgcatttttttatgaaattgttgtcgttcataaatgtgaaaatcaag 152110  T

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Target: scaffold0006; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 151958 - 152009
Alignment:
Q  2 aaattaatgaatattgcacaaactcggatattctaaattaatcacttttactg 54  Q
    |||||||||||||||| ||||||||||||||||||||  ||||||||||||||    
T  151958 aaattaatgaatattgtacaaactcggatattctaaa-aaatcacttttactg 152009  T

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Target: chr4 (Bit Score: 116; Significance: 4e-59; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 86 - 217
Target Start/End: Complemental strand, 1944845 - 1944714
Alignment:
Q  86 agggattaaaatagaaaaatctttgttataaaggagaaatgagcaaattaaggcaaataatcgcatttttctaagaaattattgtcgttcataaatgtga 185  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||||||    
T  1944845 agggattaaaatagaaaaatctttgttataaaggagaaatgagcaaattaaggcaaatagccgcatttttctaagaaattgttgtcgttcataaatgtga 1944746  T
Q  186 aaatcaagtaggaaaaaagcatgttctatttt 217  Q
    |||||||||||||||| |||||||||||||||    
T  1944745 aaatcaagtaggaaaagagcatgttctatttt 1944714  T

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Target: chr4; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 86 - 180
Target Start/End: Original strand, 15650645 - 15650739
Alignment:
Q  86 agggattaaaatagaaaaatctttgttataaaggagaaatgagcaaattaaggcaaataatcgcatttttctaagaaattattgtcgttcataaa 180  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||   |||||||| ||||||||| ||||||||||||||    
T  15650645 agggattaaaatagaaaaatctttgttataaagaagaaatgagcaaattaagggaaatagctgcatttttttaagaaattgttgtcgttcataaa 15650739  T

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Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 106 - 193
Target Start/End: Original strand, 3839248 - 3839335
Alignment:
Q  106 ctttgttataaaggagaaatgagcaaattaaggcaaataatcgcatttttctaagaaattattgtcgttcataaatgtgaaaatcaag 193  Q
    ||||||||||||||||||||||||||||||||| |||||   |||| ||||||||||||| |||| ||||||||||||||||||||||    
T  3839248 ctttgttataaaggagaaatgagcaaattaagggaaatagctgcatctttctaagaaattgttgttgttcataaatgtgaaaatcaag 3839335  T

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Target: chr4; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 1944931 - 1944873
Alignment:
Q  2 aaattaatgaatattgcacaaactcggatattctaaattaatcacttttactgtatttt 60  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1944931 aaattaatgaatattgcacaaactcggatattctaaattaatcacttttactgtatttt 1944873  T

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Target: chr4; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 101 - 193
Target Start/End: Original strand, 26870166 - 26870259
Alignment:
Q  101 aaaatctttgttataaaggagaaatgagcaaattaaggcaaataatcgcatttttc-taagaaattattgtcgttcataaatgtgaaaatcaag 193  Q
    |||| ||||||||||||| ||||||||||||||||||| |||||   ||||||||| ||||||| | |||||||||||||||||||||||||||    
T  26870166 aaaaactttgttataaagaagaaatgagcaaattaagggaaatatctgcatttttcttaagaaaatgttgtcgttcataaatgtgaaaatcaag 26870259  T

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Target: chr4; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 15650560 - 15650618
Alignment:
Q  2 aaattaatgaatattgcacaaactcggatattctaaattaatcacttttactgtatttt 60  Q
    |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  15650560 aaattaatgaatattgaacaaactcggatattctaaataaatcacttttactgtatttt 15650618  T

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Target: chr4; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 3839171 - 3839229
Alignment:
Q  2 aaattaatgaatattgcacaaactcggatattctaaattaatcacttttactgtatttt 60  Q
    |||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  3839171 aaattaataaatattgcacaaacttggatattctaaataaatcacttttactgtatttt 3839229  T

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Target: chr4; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 26870105 - 26870163
Alignment:
Q  2 aaattaatgaatattgcacaaactcggatattctaaattaatcacttttactgtatttt 60  Q
    |||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||    
T  26870105 aaattaatgaatattgcacaaactcggatattataaatgaatcacttttattgtatttt 26870163  T

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Target: chr2 (Bit Score: 100; Significance: 1e-49; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 86 - 217
Target Start/End: Original strand, 10821127 - 10821258
Alignment:
Q  86 agggattaaaatagaaaaatctttgttataaaggagaaatgagcaaattaaggcaaataatcgcatttttctaagaaattattgtcgttcataaatgtga 185  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||   ||||||| |||||||||| |||||||||||||||||||    
T  10821127 agggattaaaatagaaaaatctttgttataaaggagaaatgagcaaattaagggaaatagctgcattttcctaagaaattgttgtcgttcataaatgtga 10821226  T
Q  186 aaatcaagtaggaaaaaagcatgttctatttt 217  Q
    |||||||||||||||| | |||||||||||||    
T  10821227 aaatcaagtaggaaaagaacatgttctatttt 10821258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 100 - 193
Target Start/End: Complemental strand, 14753538 - 14753445
Alignment:
Q  100 aaaaatctttgttataaaggagaaatgagcaaattaaggcaaataatcgcatttttctaagaaattattgtcgttcataaatgtgaaaatcaag 193  Q
    ||||| ||||||||||||||||||||||||||||||||| |||||   |||| ||||||||||||| ||||||||||||||||| |||||||||    
T  14753538 aaaaaactttgttataaaggagaaatgagcaaattaagggaaatagctgcatctttctaagaaattgttgtcgttcataaatgttaaaatcaag 14753445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 100 - 193
Target Start/End: Complemental strand, 17026021 - 17025927
Alignment:
Q  100 aaaaatctttgttataaaggagaaatgagcaaattaaggcaaataatcgcatttttc-taagaaattattgtcgttcataaatgtgaaaatcaag 193  Q
    ||||| ||||||||||||| ||||||||||||||||||| |||||   ||||||||| ||||||||| ||| |||||||||||||||||||||||    
T  17026021 aaaaanctttgttataaagaagaaatgagcaaattaagggaaatatctgcatttttcttaagaaattgttgccgttcataaatgtgaaaatcaag 17025927  T

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Target: chr2; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 100 - 193
Target Start/End: Complemental strand, 17092206 - 17092112
Alignment:
Q  100 aaaaatctttgttataaaggagaaatgagcaaattaaggcaaataatcgcatttttc-taagaaattattgtcgttcataaatgtgaaaatcaag 193  Q
    ||||| ||||||||||||| ||||||||||||||||||| |||||   ||||||||| ||||||||| ||| |||||||||||||||||||||||    
T  17092206 aaaaaactttgttataaagaagaaatgagcaaattaagggaaatatctgcatttttcttaagaaattgttgccgttcataaatgtgaaaatcaag 17092112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 10821048 - 10821106
Alignment:
Q  2 aaattaatgaatattgcacaaactcggatattctaaattaatcacttttactgtatttt 60  Q
    |||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||    
T  10821048 aaattaatgaatattgaacaaacttggatattctaaataaatcacttttactgtatttt 10821106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 17026082 - 17026024
Alignment:
Q  2 aaattaatgaatattgcacaaactcggatattctaaattaatcacttttactgtatttt 60  Q
    |||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||    
T  17026082 aaattaatgaatattgcacaaactcggatattataaatgaatcacttttattgtatttt 17026024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 100 - 193
Target Start/End: Complemental strand, 16884152 - 16884059
Alignment:
Q  100 aaaaatctttgttataaaggagaaatgagcaaattaaggcaaataatcgcatttttctaagaaattattgtcgttcataaatgtgaaaatcaag 193  Q
    ||||| ||||||||||||||||| ||||| || |||||| |||||    ||||||||||||||||| ||  |||||||||||||||||||||||    
T  16884152 aaaaaactttgttataaaggagagatgagtaacttaagggaaatagcttcatttttctaagaaattgtttccgttcataaatgtgaaaatcaag 16884059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 100 - 193
Target Start/End: Complemental strand, 17041842 - 17041749
Alignment:
Q  100 aaaaatctttgttataaaggagaaatgagcaaattaaggcaaataatcgcatttttctaagaaattattgtcgttcataaatgtgaaaatcaag 193  Q
    ||||| ||||||||||||||||| ||||| || |||||| |||||    ||||||||||||||||| ||  |||||||||||||||||||||||    
T  17041842 aaaaaactttgttataaaggagagatgagtaacttaagggaaatagcttcatttttctaagaaattgtttccgttcataaatgtgaaaatcaag 17041749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 17092264 - 17092209
Alignment:
Q  5 ttaatgaatattgcacaaactcggatattctaaattaatcacttttactgtatttt 60  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||    
T  17092264 ttaatgaatattgcacaaactcggatattataaatgaatcacttttattgtatttt 17092209  T

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Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 16884212 - 16884155
Alignment:
Q  3 aattaatgaatattgcacaaactcggatattctaaattaatcacttttactgtatttt 60  Q
    ||||||||||| |||||  |||||||||||||||||| ||||||||||||||||||||    
T  16884212 aattaatgaatgttgcattaactcggatattctaaataaatcacttttactgtatttt 16884155  T

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Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 17041902 - 17041845
Alignment:
Q  3 aattaatgaatattgcacaaactcggatattctaaattaatcacttttactgtatttt 60  Q
    ||||||||||| |||||  |||||||||||||||||| ||||||||||||||||||||    
T  17041902 aattaatgaatgttgcattaactcggatattctaaataaatcacttttactgtatttt 17041845  T

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Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 14753598 - 14753540
Alignment:
Q  2 aaattaatgaatattgcacaaactcggatattctaaattaatcacttttactgtatttt 60  Q
    |||||||||||||||||||||| | | ||||||||||| ||||||||||||| ||||||    
T  14753598 aaattaatgaatattgcacaaatttgaatattctaaataaatcacttttactatatttt 14753540  T

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Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 2 - 182
Target Start/End: Original strand, 12702136 - 12702313
Alignment:
Q  2 aaattaatgaatattgcacaaactcggatattctaaattaatcacttttactgtattttnnnnnnnnnn-ctttgnnnnnnnnnnagggattaaaataga 100  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||           ||||           |||||||||||||||    
T  12702136 aaattaatgaatattgcacaaactcggatattctaaataaatcacttttactgtattttaaaaaaaaaaacttt----tttttttagggattaaaataga 12702231  T
Q  101 aaaatctttgttataaaggagaaatgagcaaattaaggcaaataatcgcatttttctaagaaattattgtcgttcataaatg 182  Q
    |||||||||||||||||||||||||||||||||||||| |||||   ||||||| |||||||||| ||||||||||||||||    
T  12702232 aaaatctttgttataaaggagaaatgagcaaattaagggaaatagctgcattttcctaagaaattgttgtcgttcataaatg 12702313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 2 - 182
Target Start/End: Original strand, 9809896 - 9810072
Alignment:
Q  2 aaattaatgaatattgcacaaactcggatattctaaattaatcacttttactgtattttnnnnnnnnnnctttgnnnnnnnnnnagggattaaaatagaa 101  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||            |||           ||||||||||||||||    
T  9809896 aaattaatgaatattgcacaaactcggatattctaaataaatcacttttactgtatttaaaaaaaaaactttt----tttttttagggattaaaatagaa 9809991  T
Q  102 aaatctttgttataaaggagaaatgagcaaattaaggcaaataatcgcatttttctaagaaattattgtcgttcataaatg 182  Q
    ||||||||||||||||||||||||||||||||||||| |||||   ||||||| |||||||||| ||||||||||||||||    
T  9809992 aaatctttgttataaaggagaaatgagcaaattaagggaaatagctgcattttcctaagaaattgttgtcgttcataaatg 9810072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 2 - 182
Target Start/End: Original strand, 7863602 - 7863780
Alignment:
Q  2 aaattaatgaatattgcacaaactcggatattctaaattaatcacttttactgtattttnnnnnnnnnnctttgnnnnnnnnnnagggattaaaatagaa 101  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||           |||||          ||||||||||||||||    
T  7863602 aaattaatgaatattgcacaaactcggatattctaaataaatcacttttattgtattt-aaaaaaaaaactttgttttttttt-agggattaaaatagaa 7863699  T
Q  102 aaatctttgttataaaggagaaatgagcaaattaaggcaaataatcgcatttttctaagaaattattgtcgttcataaatg 182  Q
    ||||||||||||||||||||||||||||||||||||| |||||   ||||||| ||||||||||  |||||||||||||||    
T  7863700 aaatctttgttataaaggagaaatgagcaaattaagggaaatagctgcattttcctaagaaattgctgtcgttcataaatg 7863780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 86 - 182
Target Start/End: Original strand, 12763232 - 12763329
Alignment:
Q  86 agggattaaaatagaaaaatctttgttataaaggagaaatgagc-aaattaaggcaaataatcgcatttttctaagaaattattgtcgttcataaatg 182  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||   |||||||||||||||||| ||||||||||||||||    
T  12763232 agggattaaaatagaaaaatctttgttataaaggagaaatgagcaaaattaagggaaatagctgcatttttctaagaaattgttgtcgttcataaatg 12763329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 111 - 193
Target Start/End: Original strand, 3210071 - 3210153
Alignment:
Q  111 ttataaaggagaaatgagcaaattaaggcaaataatcgcatttttctaagaaattattgtcgttcataaatgtgaaaatcaag 193  Q
    |||||||||||||||||||||||||||| ||||||| ||||||| |||||||||| |||||||||||||||||||||||||||    
T  3210071 ttataaaggagaaatgagcaaattaagggaaataattgcattttcctaagaaattgttgtcgttcataaatgtgaaaatcaag 3210153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 100 - 193
Target Start/End: Complemental strand, 290835 - 290742
Alignment:
Q  100 aaaaatctttgttataaaggagaaatgagcaaattaaggcaaataatcgcatttttctaagaaattattgtcgttcataaatgtgaaaatcaag 193  Q
    ||||| ||||||||||||||||||||||||||||||||| |||||   |||| |||||||||||||  || |||||||||||||||||||||||    
T  290835 aaaaaactttgttataaaggagaaatgagcaaattaagggaaatagctgcatctttctaagaaattgatgccgttcataaatgtgaaaatcaag 290742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 100 - 193
Target Start/End: Complemental strand, 9702612 - 9702518
Alignment:
Q  100 aaaaatctttgttataaaggagaaatgagcaaattaaggcaaataatcgcatttttct-aagaaattattgtcgttcataaatgtgaaaatcaag 193  Q
    ||||| ||||||||||||| ||||||||||||||||| | |||||   |||||||||| |||||||| |||||||||||||||||||||||||||    
T  9702612 aaaaaactttgttataaagaagaaatgagcaaattaaaggaaatatctgcatttttcttaagaaattgttgtcgttcataaatgtgaaaatcaag 9702518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 12763152 - 12763210
Alignment:
Q  2 aaattaatgaatattgcacaaactcggatattctaaattaatcacttttactgtatttt 60  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  12763152 aaattaatgaatattgcacaaactcggatattctaaataaatcacttttactgtatttt 12763210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 3209999 - 3210057
Alignment:
Q  2 aaattaatgaatattgcacaaactcggatattctaaattaatcacttttactgtatttt 60  Q
    ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||    
T  3209999 aaattaatgaatatttcacaaactcggatattctaaataaatcacttttactgtatttt 3210057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 290895 - 290845
Alignment:
Q  2 aaattaatgaatattgcacaaactcggatattctaaattaatcacttttac 52  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  290895 aaattaatgaatattgcacaaacttggatattctaaataaatcacttttac 290845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 9702674 - 9702616
Alignment:
Q  2 aaattaatgaatattgcacaaactcggatattctaaattaatcacttttactgtatttt 60  Q
    |||||||||||||||||||||||||||||||| ||||| ||||| ||||| ||||||||    
T  9702674 aaattaatgaatattgcacaaactcggatattataaatgaatcatttttattgtatttt 9702616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 7e-36; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 2 - 182
Target Start/End: Original strand, 26035889 - 26036064
Alignment:
Q  2 aaattaatgaatattgcacaaactcggatattctaaattaatcacttttactgtattttnnnnnnnnnnctttgnnnnnnnnnnagggattaaaatagaa 101  Q
    |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||          ||||           ||||||||||||||||    
T  26035889 aaattaataaatattgcacaaactcggatattctaaataaatcacttttactgtattttaaaaaaaaaacttt-----ttttttagggattaaaatagaa 26035983  T
Q  102 aaatctttgttataaaggagaaatgagcaaattaaggcaaataatcgcatttttctaagaaattattgtcgttcataaatg 182  Q
    ||||||||||||||||||||||||||||||||||||| |||||   ||||||| |||||||||| || |||||||||||||    
T  26035984 aaatctttgttataaaggagaaatgagcaaattaagggaaatagctgcattttcctaagaaattgttttcgttcataaatg 26036064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 100 - 193
Target Start/End: Complemental strand, 35437160 - 35437067
Alignment:
Q  100 aaaaatctttgttataaaggagaaatgagcaaattaaggcaaataatcgcatttttctaagaaattattgtcgttcataaatgtgaaaatcaag 193  Q
    ||||| ||||||||||||||| ||||||||||||||||| |||||   |||| ||||||||||||| |||||||||||||||||||||||||||    
T  35437160 aaaaaactttgttataaaggaaaaatgagcaaattaagggaaatagctgcatctttctaagaaattgttgtcgttcataaatgtgaaaatcaag 35437067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 101 - 193
Target Start/End: Complemental strand, 11383503 - 11383411
Alignment:
Q  101 aaaatctttgttataaaggagaaatgagcaaattaaggcaaataatcgcatttttctaagaaattattgtcgttcataaatgtgaaaatcaag 193  Q
    |||||||||||||||||||||||||||||||||||||| ||||||  |||  | ||||||||||| ||||| |||||||||||||||||||||    
T  11383503 aaaatctttgttataaaggagaaatgagcaaattaagggaaataactgcacctctctaagaaattgttgtccttcataaatgtgaaaatcaag 11383411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 107 - 193
Target Start/End: Original strand, 12157851 - 12157937
Alignment:
Q  107 tttgttataaaggagaaatgagcaaattaaggcaaataatcgcatttttctaagaaattattgtcgttcataaatgtgaaaatcaag 193  Q
    |||||||||||||||||||||||||||||| | ||||||  |||| ||||||||||||| ||||||||| |||||||||||||||||    
T  12157851 tttgttataaaggagaaatgagcaaattaaaggaaataactgcatctttctaagaaattgttgtcgttcctaaatgtgaaaatcaag 12157937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 100 - 193
Target Start/End: Complemental strand, 16496282 - 16496189
Alignment:
Q  100 aaaaatctttgttataaaggagaaatgagcaaattaaggcaaataatcgcatttttctaagaaattattgtcgttcataaatgtgaaaatcaag 193  Q
    ||||| ||||||||||||||||||||||||||||||||| ||| |   |||||||| || |||||| |||||||||||||||||||||||||||    
T  16496282 aaaaaactttgttataaaggagaaatgagcaaattaagggaaaaagctgcatttttttatgaaattgttgtcgttcataaatgtgaaaatcaag 16496189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 100 - 189
Target Start/End: Original strand, 36164965 - 36165054
Alignment:
Q  100 aaaaatctttgttataaaggagaaatgagcaaattaaggcaaataatcgcatttttctaagaaattattgtcgttcataaatgtgaaaat 189  Q
    ||||| ||||||||||||||||||||||||||||||||| |||||   |||| ||||||| ||||| |||||||||||||||||||||||    
T  36164965 aaaaaactttgttataaaggagaaatgagcaaattaagggaaatagctgcatctttctaaaaaattgttgtcgttcataaatgtgaaaat 36165054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 100 - 193
Target Start/End: Original strand, 54792827 - 54792920
Alignment:
Q  100 aaaaatctttgttataaaggagaaatgagcaaattaaggcaaataatcgcatttttctaagaaattattgtcgttcataaatgtgaaaatcaag 193  Q
    ||||| |||||||||||| |||||||||||||||||||| ||| |   |||||||| || |||||| |||||||||||||||||||||||||||    
T  54792827 aaaaaactttgttataaaagagaaatgagcaaattaagggaaaaagctgcatttttttatgaaattgttgtcgttcataaatgtgaaaatcaag 54792920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 86 - 182
Target Start/End: Original strand, 15315424 - 15315520
Alignment:
Q  86 agggattaaaatagaaaaatctttgttataaaggagaaatgagcaaattaaggcaaataatcgcatttttctaagaaattattgtcgttcataaatg 182  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||| |||  |||||   ||||||| ||||||||||  |||||||||||||||    
T  15315424 agggattaaaatagaaaaatctttgttataaagaagaactgagcaaataaagagaaatagctgcattttcctaagaaattgctgtcgttcataaatg 15315520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 35437220 - 35437162
Alignment:
Q  2 aaattaatgaatattgcacaaactcggatattctaaattaatcacttttactgtatttt 60  Q
    |||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||    
T  35437220 aaattaatgaatattgcacaaactcggatattctaaataaatcatttttactatatttt 35437162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 36164904 - 36164963
Alignment:
Q  1 taaattaatgaatattgcacaaactcggatattctaaattaatcacttttactgtatttt 60  Q
    ||||||||| |||||||||||||||||||| || ||||| ||||||||||||| ||||||    
T  36164904 taaattaattaatattgcacaaactcggattttttaaataaatcacttttactatatttt 36164963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 12157785 - 12157843
Alignment:
Q  2 aaattaatgaatattgcacaaactcggatattctaaattaatcacttttactgtatttt 60  Q
    ||||||||||||||||| ||||||  |||||||||||| ||||||||||||| ||||||    
T  12157785 aaattaatgaatattgctcaaactatgatattctaaataaatcacttttactatatttt 12157843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 16496341 - 16496290
Alignment:
Q  2 aaattaatgaatattgcacaaactcggatattctaaattaatcacttttactg 54  Q
    |||||||||||||||| ||||||||||||||||||||  ||||||||||||||    
T  16496341 aaattaatgaatattgtacaaactcggatattctaaa-aaatcacttttactg 16496290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 54792768 - 54792821
Alignment:
Q  2 aaattaatgaatattgcacaaactcggatattctaaattaatcacttttactgta 56  Q
    |||||||||||||||||||||| ||||||||||||||  ||||||||||| ||||    
T  54792768 aaattaatgaatattgcacaaattcggatattctaaa-aaatcacttttaatgta 54792821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 50
Target Start/End: Original strand, 15315353 - 15315392
Alignment:
Q  11 aatattgcacaaactcggatattctaaattaatcactttt 50  Q
    ||||||||||||||||| ||||||||||| ||||||||||    
T  15315353 aatattgcacaaactcgaatattctaaataaatcactttt 15315392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 3e-35; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 2 - 182
Target Start/End: Complemental strand, 8615051 - 8614872
Alignment:
Q  2 aaattaatgaatattgcacaaactcggatattctaaattaatcacttttactgtattttnnnnnnnnnnctttgnnnnnnnnnnagggattaaaatagaa 101  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||           |||||          ||||||||||||||||    
T  8615051 aaattaatgaatattgcacaaactcggatattctaaataaatcacttttattgtatttaaaaaaaaaaactttgttttttttt-agggattaaaatagaa 8614953  T
Q  102 aaatctttgttataaaggagaaatgagcaaattaaggcaaataatcgcatttttctaagaaattattgtcgttcataaatg 182  Q
    ||||||||||||||||||||||||||||||||||||| |||||   ||||||| ||||||||||  |||||||||||||||    
T  8614952 aaatctttgttataaaggagaaatgagcaaattaagggaaatagctgcattttcctaagaaattgctgtcgttcataaatg 8614872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 86 - 182
Target Start/End: Original strand, 5753262 - 5753358
Alignment:
Q  86 agggattaaaatagaaaaatctttgttataaaggagaaatgagcaaattaaggcaaataatcgcatttttctaagaaattattgtcgttcataaatg 182  Q
    |||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||   ||||||| |||||||||| ||||||||||||||||    
T  5753262 agggattaaaatagaaaaatctttgttataaaggagaattgagaaaattaaggaaaatagctgcattttcctaagaaattgttgtcgttcataaatg 5753358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 86 - 182
Target Start/End: Complemental strand, 33318920 - 33318824
Alignment:
Q  86 agggattaaaatagaaaaatctttgttataaaggagaaatgagcaaattaaggcaaataatcgcatttttctaagaaattattgtcgttcataaatg 182  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||   |||||||  ||||||||| ||||||||||||||||    
T  33318920 agggattaaaatagaaaaatctttgttataaaggagaaatgaacaaattaagggaaatagctgcattttcttaagaaattgttgtcgttcataaatg 33318824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 100 - 193
Target Start/End: Complemental strand, 1932244 - 1932151
Alignment:
Q  100 aaaaatctttgttataaaggagaaatgagcaaattaaggcaaataatcgcatttttctaagaaattattgtcgttcataaatgtgaaaatcaag 193  Q
    ||||| ||||||||||||| ||||||||||||||||||| ||||||   ||| ||||||||||||| |||||||||||||||||||||||||||    
T  1932244 aaaaaactttgttataaagaagaaatgagcaaattaaggaaaataactacatctttctaagaaattgttgtcgttcataaatgtgaaaatcaag 1932151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 4425873 - 4425815
Alignment:
Q  2 aaattaatgaatattgcacaaactcggatattctaaattaatcacttttactgtatttt 60  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  4425873 aaattaatgaatattgcacaaactcggatattctaaataaatcacttttactgtatttt 4425815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 100 - 193
Target Start/End: Complemental strand, 4425813 - 4425720
Alignment:
Q  100 aaaaatctttgttataaaggagaaatgagcaaattaaggcaaataatcgcatttttctaagaaattattgtcgttcataaatgtgaaaatcaag 193  Q
    ||||| |||||||||||||||||||||| |||||||| | |||||   |||| ||| ||||||||| |||| ||||||||||||||||||||||    
T  4425813 aaaaaactttgttataaaggagaaatgaacaaattaacgaaaatagctgcatctttttaagaaattgttgttgttcataaatgtgaaaatcaag 4425720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 1932305 - 1932247
Alignment:
Q  2 aaattaatgaatattgcacaaactcggatattctaaattaatcacttttactgtatttt 60  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||    
T  1932305 aaattaatgaatattgcacaaactcggatattctaaataaatcactgttactatatttt 1932247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 33319017 - 33318959
Alignment:
Q  2 aaattaatgaatattgcacaaactcggatattctaaattaatcacttttactgtatttt 60  Q
    |||||||||||||||||||||||||| ||||||||||| || ||||||||||| |||||    
T  33319017 aaattaatgaatattgcacaaactcgaatattctaaataaaccacttttactgcatttt 33318959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 100 - 193
Target Start/End: Original strand, 9226157 - 9226250
Alignment:
Q  100 aaaaatctttgttataaaggagaaatgagcaaattaaggcaaataatcgcatttttctaagaaattattgtcgttcataaatgtgaaaatcaag 193  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||||  |||| ||||||||||||| |||||||||||||||||||||||||||    
T  9226157 aaaaaactttgttataaaggagaaatgagcaaattaagggaaataactgcatctttctaagaaattgttgtcgttcataaatgtgaaaatcaag 9226250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 86 - 182
Target Start/End: Complemental strand, 34130635 - 34130539
Alignment:
Q  86 agggattaaaatagaaaaatctttgttataaaggagaaatgagcaaattaaggcaaataatcgcatttttctaagaaattattgtcgttcataaatg 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||   ||||||| |||||||||| ||||||||||||||||    
T  34130635 agggattaaaatagaaaaatctttgttataaaggagaaatgagcaaattaagaaaaatagctgcattttcctaagaaattgttgtcgttcataaatg 34130539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 100 - 193
Target Start/End: Original strand, 38434415 - 38434509
Alignment:
Q  100 aaaaatctttgttataaaggagaaatgagcaaattaaggcaaataatcgcatttttc-taagaaattattgtcgttcataaatgtgaaaatcaag 193  Q
    ||||| ||||||||||||| ||||||||||||||||||| |||||   ||||||||| ||||||||| ||| |||||||||||||||||||||||    
T  38434415 aaaaaactttgttataaagaagaaatgagcaaattaagggaaatatctgcatttttcttaagaaattgttgccgttcataaatgtgaaaatcaag 38434509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 42244657 - 42244714
Alignment:
Q  2 aaattaatgaatattgcacaaactcggatattctaaattaatcacttttactgtattt 59  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  42244657 aaattaatgaatattgcacaaactcggatattctaaataaatcacttttactgtattt 42244714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 91 - 193
Target Start/End: Original strand, 42244713 - 42244815
Alignment:
Q  91 ttaaaatagaaaaatctttgttataaaggagaaatgagcaaattaaggcaaataatcgcatttttctaagaaattattgtcgttcataaatgtgaaaatc 190  Q
    |||||| | ||||| |||| |||||||||||||||||||||||||||| |||||    ||| |||||||||||||  |||| ||||||||||||||||||    
T  42244713 ttaaaaaaaaaaaaactttattataaaggagaaatgagcaaattaaggaaaatagctacatctttctaagaaattgctgtcattcataaatgtgaaaatc 42244812  T
Q  191 aag 193  Q
    |||    
T  42244813 aag 42244815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 101 - 193
Target Start/End: Complemental strand, 42996845 - 42996752
Alignment:
Q  101 aaaatctttgttataaaggagaaatgagcaaattaaggcaaataatcgcatttttc-taagaaattattgtcgttcataaatgtgaaaatcaag 193  Q
    |||| ||||||||||||| ||||||||||||||||||| |||||   ||||||||| ||||||| | ||||||||||||||||| |||||||||    
T  42996845 aaaaactttgttataaagaagaaatgagcaaattaagggaaatatctgcatttttcttaagaaaatgttgtcgttcataaatgtcaaaatcaag 42996752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 9226097 - 9226155
Alignment:
Q  2 aaattaatgaatattgcacaaactcggatattctaaattaatcacttttactgtatttt 60  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||    
T  9226097 aaattaatgaatattgcacaaactcgaatattctaaataaatcacttttactatatttt 9226155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 38434354 - 38434412
Alignment:
Q  2 aaattaatgaatattgcacaaactcggatattctaaattaatcacttttactgtatttt 60  Q
    |||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||    
T  38434354 aaattaatgaatattgcacaaactcggatattataaatgaatcacttttattgtatttt 38434412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 42996906 - 42996848
Alignment:
Q  2 aaattaatgaatattgcacaaactcggatattctaaattaatcacttttactgtatttt 60  Q
    |||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||    
T  42996906 aaattaatgaatattgcacaaactcggatattataaatgaatcacttttattgtatttt 42996848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 130 - 193
Target Start/End: Original strand, 4481283 - 4481346
Alignment:
Q  130 aaattaaggcaaataatcgcatttttctaagaaattattgtcgttcataaatgtgaaaatcaag 193  Q
    ||||||||| ||||||  |||| |||||||||||||| || |||||||||||||||||||||||    
T  4481283 aaattaagggaaataactgcatctttctaagaaattactgccgttcataaatgtgaaaatcaag 4481346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 114 - 192
Target Start/End: Complemental strand, 19123129 - 19123052
Alignment:
Q  114 taaaggagaaatgagcaaattaaggcaaataatcgcatttttctaagaaattattgtcgttcataaatgtgaaaatcaa 192  Q
    ||||||| ||||||||||||||||| | |||  ||||||||||||||| | |||||||||| |||||| ||||||||||    
T  19123129 taaaggataaatgagcaaattaagggagatag-cgcatttttctaagagaatattgtcgtttataaatatgaaaatcaa 19123052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 108 - 192
Target Start/End: Complemental strand, 19124131 - 19124047
Alignment:
Q  108 ttgttataaaggagaaatgagcaaattaaggcaaataatcgcatttttctaagaaattattgtcgttcataaatgtgaaaatcaa 192  Q
    ||||| |||| |||||||||||||||||||| | |||  ||||||||||||| | ||| |||||||| |||| ||| ||||||||    
T  19124131 ttgttctaaatgagaaatgagcaaattaagggagatagccgcatttttctaaaagattgttgtcgtttataattgtaaaaatcaa 19124047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0249 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: scaffold0249
Description:

Target: scaffold0249; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 86 - 182
Target Start/End: Original strand, 25082 - 25178
Alignment:
Q  86 agggattaaaatagaaaaatctttgttataaaggagaaatgagcaaattaaggcaaataatcgcatttttctaagaaattattgtcgttcataaatg 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||   |||||||  ||||||||| ||||||||||||||||    
T  25082 agggattaaaatagaaaaatctttgttataaaggagaaatgagcaaattaagggaaatagctgcattttcttaagaaattgttgtcgttcataaatg 25178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0249; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 24994 - 25052
Alignment:
Q  2 aaattaatgaatattgcacaaactcggatattctaaattaatcacttttactgtatttt 60  Q
    ||||||||||||||||||||||||| |||||||||||| || |||||||||||||||||    
T  24994 aaattaatgaatattgcacaaactcagatattctaaataaaccacttttactgtatttt 25052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 6e-30; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 86 - 180
Target Start/End: Original strand, 2961168 - 2961262
Alignment:
Q  86 agggattaaaatagaaaaatctttgttataaaggagaaatgagcaaattaaggcaaataatcgcatttttctaagaaattattgtcgttcataaa 180  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||   |||||||| ||||||||| ||||||||||||||    
T  2961168 agggattaaaatagaaaaatctttgttataaagaagaaatgagcaaattaagggaaatagctgcatttttttaagaaattgttgtcgttcataaa 2961262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 100 - 193
Target Start/End: Complemental strand, 39204768 - 39204675
Alignment:
Q  100 aaaaatctttgttataaaggagaaatgagcaaattaaggcaaataatcgcatttttctaagaaattattgtcgttcataaatgtgaaaatcaag 193  Q
    ||||| |||||||||||||||||||||| |||||||||| ||||||| ||||||| |||||||||| ||| |||||||||||||||||||||||    
T  39204768 aaaaaactttgttataaaggagaaatgaacaaattaaggaaaataattgcattttcctaagaaattgttgccgttcataaatgtgaaaatcaag 39204675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 98 - 193
Target Start/End: Complemental strand, 29434178 - 29434083
Alignment:
Q  98 agaaaaatctttgttataaaggagaaatgagcaaattaaggcaaataatcgcatttttctaagaaattattgtcgttcataaatgtgaaaatcaag 193  Q
    ||||||| ||||||||||||||||||||||||||||||||| |||||   |||| |||||||||||||  ||| |||||||||| |||||||||||    
T  29434178 agaaaaaactttgttataaaggagaaatgagcaaattaagggaaatagctgcatctttctaagaaattgatgttgttcataaatatgaaaatcaag 29434083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 101 - 193
Target Start/End: Complemental strand, 39445158 - 39445065
Alignment:
Q  101 aaaatctttgttataaaggagaaatgagcaaattaaggcaaataatcgcatttttc-taagaaattattgtcgttcataaatgtgaaaatcaag 193  Q
    |||| ||||||||||||| ||||||||||||||||||| |||||   ||||||||| ||||||| | |||||||||||||||||||||||||||    
T  39445158 aaaaactttgttataaagaagaaatgagcaaattaagggaaatatctgcatttttcttaagaaaatgttgtcgttcataaatgtgaaaatcaag 39445065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 2961083 - 2961141
Alignment:
Q  2 aaattaatgaatattgcacaaactcggatattctaaattaatcacttttactgtatttt 60  Q
    |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  2961083 aaattaatgaatattgaacaaactcggatattctaaataaatcacttttactgtatttt 2961141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 100 - 193
Target Start/End: Original strand, 23626193 - 23626287
Alignment:
Q  100 aaaaatctttgttataaaggagaaatgagcaaattaaggcaaataatcgcatttttc-taagaaattattgtcgttcataaatgtgaaaatcaag 193  Q
    ||||| ||||||||||||| ||||||||||||||||||| |||||   ||||||||| ||||||||| |||  ||||||||||||||||||||||    
T  23626193 aaaaaactttgttataaagaagaaatgagcaaattaagggaaatatctgcatttttcttaagaaattgttgctgttcataaatgtgaaaatcaag 23626287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 101 - 193
Target Start/End: Original strand, 12250049 - 12250142
Alignment:
Q  101 aaaatctttgttataaaggagaaatgagcaaattaaggcaaataatcgcatttttc-taagaaattattgtcgttcataaatgtgaaaatcaag 193  Q
    |||| ||||||||||||| ||||||||||||||||||| |||||   ||||||||| ||||||| | |||||||||||||| ||||||||||||    
T  12250049 aaaaactttgttataaagaagaaatgagcaaattaagggaaatatctgcatttttcttaagaaaatgttgtcgttcataaacgtgaaaatcaag 12250142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 39204830 - 39204771
Alignment:
Q  1 taaattaatgaatattgcacaaactcggatattctaaattaatcacttttactgtatttt 60  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  39204830 taaattaataaatattgcacaaactcggatattctaaataaatcacttttattgtatttt 39204771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 12249988 - 12250046
Alignment:
Q  2 aaattaatgaatattgcacaaactcggatattctaaattaatcacttttactgtatttt 60  Q
    |||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||    
T  12249988 aaattaatgaatattgcacaaactcggatattataaatgaatcacttttattgtatttt 12250046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 23626132 - 23626190
Alignment:
Q  2 aaattaatgaatattgcacaaactcggatattctaaattaatcacttttactgtatttt 60  Q
    |||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||    
T  23626132 aaattaatgaatattgcacaaactcggatattataaatgaatcacttttattgtatttt 23626190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 29434239 - 29434181
Alignment:
Q  2 aaattaatgaatattgcacaaactcggatattctaaattaatcacttttactgtatttt 60  Q
    |||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||    
T  29434239 aaattaataaatattgcacaaactcagatattctaaataaatcacttttactgtatttt 29434181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 39445219 - 39445161
Alignment:
Q  2 aaattaatgaatattgcacaaactcggatattctaaattaatcacttttactgtatttt 60  Q
    |||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||    
T  39445219 aaattaatgaatattgcacaaactcggatattataaatgaatcacttttattgtatttt 39445161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 100 - 193
Target Start/End: Complemental strand, 41907915 - 41907822
Alignment:
Q  100 aaaaatctttgttataaaggagaaatgagcaaattaaggcaaataatcgcatttttctaagaaattattgtcgttcataaatgtgaaaatcaag 193  Q
    ||||| |||||||  |||||||||||||||||||||||| |||||   |||| ||||||||||||| ||||  ||||||||||| |||||||||    
T  41907915 aaaaaactttgtttcaaaggagaaatgagcaaattaagggaaatagctgcatctttctaagaaattgttgtttttcataaatgtcaaaatcaag 41907822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 41907975 - 41907917
Alignment:
Q  2 aaattaatgaatattgcacaaactcggatattctaaattaatcacttttactgtatttt 60  Q
    ||||||||||||||||||||||  ||| |||||||||| ||||||||||||||||||||    
T  41907975 aaattaatgaatattgcacaaatccggttattctaaataaatcacttttactgtatttt 41907917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 100 - 193
Target Start/End: Complemental strand, 61618 - 61525
Alignment:
Q  100 aaaaatctttgttataaaggagaaatgagcaaattaaggcaaataatcgcatttttctaagaaattattgtcgttcataaatgtgaaaatcaag 193  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||||  | || ||||||||||||| |||||||||||||||||||||||||||    
T  61618 aaaaaactttgttataaaggagaaatgagcaaattaagggaaataactgtatctttctaagaaattgttgtcgttcataaatgtgaaaatcaag 61525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 61678 - 61620
Alignment:
Q  2 aaattaatgaatattgcacaaactcggatattctaaattaatcacttttactgtatttt 60  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  61678 aaattaatgaatattgcacaaactcggatattctaaataaatcacttttactatatttt 61620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 6e-27; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 100 - 193
Target Start/End: Complemental strand, 12714878 - 12714785
Alignment:
Q  100 aaaaatctttgttataaaggagaaatgagcaaattaaggcaaataatcgcatttttctaagaaattattgtcgttcataaatgtgaaaatcaag 193  Q
    ||||| ||||||||||||||||||||||||||||||||| ||| |   ||||||||||| |||||| |||||||||||||||||||||||||||    
T  12714878 aaaaaactttgttataaaggagaaatgagcaaattaagggaaaaagctgcatttttctatgaaattgttgtcgttcataaatgtgaaaatcaag 12714785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 100 - 193
Target Start/End: Complemental strand, 28631714 - 28631620
Alignment:
Q  100 aaaaatctttgttataaaggagaaatgagcaaattaaggcaaataatcgcatttttc-taagaaattattgtcgttcataaatgtgaaaatcaag 193  Q
    ||||| ||||||||||||| ||||||||||||||||||| |||||   ||||||||| ||||||||| |||||||||||||||||||||||||||    
T  28631714 aaaaaactttgttataaagaagaaatgagcaaattaagggaaatatctgcatttttcttaagaaattgttgtcgttcataaatgtgaaaatcaag 28631620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 100 - 193
Target Start/End: Original strand, 13662255 - 13662348
Alignment:
Q  100 aaaaatctttgttataaaggagaaatgagcaaattaaggcaaataatcgcatttttctaagaaattattgtcgttcataaatgtgaaaatcaag 193  Q
    ||||| ||||||||||||||||||||||||||||||||| ||| |   |||||||| || |||||| |||||||||||||||||||||||||||    
T  13662255 aaaaaactttgttataaaggagaaatgagcaaattaagggaaaaagctgcatttttttatgaaattgttgtcgttcataaatgtgaaaatcaag 13662348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 100 - 193
Target Start/End: Original strand, 28565565 - 28565658
Alignment:
Q  100 aaaaatctttgttataaaggagaaatgagcaaattaaggcaaataatcgcatttttctaagaaattattgtcgttcataaatgtgaaaatcaag 193  Q
    ||||| ||||||||||||||||||||||||||||||||| |||      |||||||||| |||||| |||||||||||||||||||||||||||    
T  28565565 aaaaaactttgttataaaggagaaatgagcaaattaagggaaaaggctacatttttctatgaaattgttgtcgttcataaatgtgaaaatcaag 28565658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 15317611 - 15317553
Alignment:
Q  2 aaattaatgaatattgcacaaactcggatattctaaattaatcacttttactgtatttt 60  Q
    |||||||||||||||||||||||||| ||||||||||| ||||| |||| |||||||||    
T  15317611 aaattaatgaatattgcacaaactcgaatattctaaataaatcaattttgctgtatttt 15317553  T

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Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 28565506 - 28565559
Alignment:
Q  2 aaattaatgaatattgcacaaactcggatattctaaattaatcacttttactgta 56  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  28565506 aaattaatgaatattgcacaaactcggatattctaaa-aaatcacttttactgta 28565559  T

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Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 28631776 - 28631718
Alignment:
Q  2 aaattaatgaatattgcacaaactcggatattctaaattaatcacttttactgtatttt 60  Q
    |||||||||||||||||||||||||||||||| ||||| ||||| ||||| ||||||||    
T  28631776 aaattaatgaatattgcacaaactcggatattataaatgaatcatttttattgtatttt 28631718  T

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Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 100 - 161
Target Start/End: Complemental strand, 15317551 - 15317490
Alignment:
Q  100 aaaaatctttgttataaaggagaaatgagcaaattaaggcaaataatcgcatttttctaaga 161  Q
    ||||| ||||||||||||||||||||||||||||||||| |||||   ||||||||||||||    
T  15317551 aaaaaactttgttataaaggagaaatgagcaaattaaggaaaatagctgcatttttctaaga 15317490  T

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Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 12714937 - 12714884
Alignment:
Q  2 aaattaatgaatattgcacaaactcggatattctaaattaatcacttttactgta 56  Q
    |||||||||||||||||||||||||||||||| ||||  ||||||||||||||||    
T  12714937 aaattaatgaatattgcacaaactcggatattttaaa-aaatcacttttactgta 12714884  T

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Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 13662196 - 13662247
Alignment:
Q  2 aaattaatgaatattgcacaaactcggatattctaaattaatcacttttactg 54  Q
    |||||||||||||||| ||||||||||||||||||||  ||||||||||||||    
T  13662196 aaattaatgaatattgtacaaactcggatattctaaa-aaatcacttttactg 13662247  T

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Target: scaffold0376 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: scaffold0376
Description:

Target: scaffold0376; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 86 - 182
Target Start/End: Original strand, 10945 - 11041
Alignment:
Q  86 agggattaaaatagaaaaatctttgttataaaggagaaatgagcaaattaaggcaaataatcgcatttttctaagaaattattgtcgttcataaatg 182  Q
    |||||||||||||||||||||| ||||||||| || |||||| |||||||||| |||||   ||||||| |||||||||| ||||||||||||||||    
T  10945 agggattaaaatagaaaaatctatgttataaaagataaatgaacaaattaagggaaatagctgcattttcctaagaaattgttgtcgttcataaatg 11041  T

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Target: scaffold0376; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 10857 - 10915
Alignment:
Q  2 aaattaatgaatattgcacaaactcggatattctaaattaatcacttttactgtatttt 60  Q
    |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  10857 aaattaatgaatcttgcacaaactcggatattctaaataaatcacttttactgtatttt 10915  T

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Target: scaffold0088 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 101 - 193
Target Start/End: Original strand, 52830 - 52923
Alignment:
Q  101 aaaatctttgttataaaggagaaatgagcaaattaaggcaaataatcgcatttttc-taagaaattattgtcgttcataaatgtgaaaatcaag 193  Q
    |||| ||||||||||||| ||||||||||||||||||| |||||   ||||||||| ||||||| | |||||||||||||||||||||||||||    
T  52830 aaaaactttgttataaagaagaaatgagcaaattaagggaaatatctgcatttttcttaagaaaatgttgtcgttcataaatgtgaaaatcaag 52923  T

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Target: scaffold0088; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 52769 - 52827
Alignment:
Q  2 aaattaatgaatattgcacaaactcggatattctaaattaatcacttttactgtatttt 60  Q
    |||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||    
T  52769 aaattaatgaatattgcacaaactcggatattataaatgaatcacttttattgtatttt 52827  T

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