View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13067_low_28 (Length: 206)
Name: NF13067_low_28
Description: NF13067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13067_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 161; Significance: 5e-86; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 18 - 186
Target Start/End: Original strand, 48106093 - 48106261
Alignment:
| Q |
18 |
tttttgttttcatcgaattctacaactttgtcaaaattaaaataacatcattctttccatatttttgagccttaggattaatcaataggtttaattacaa |
117 |
Q |
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| T |
48106093 |
tttttgttttcatcgaattctacaactttgtcaaaattaaaataacatcattctttccatatttttgagccttaggattaatcaataggtttaattacag |
48106192 |
T |
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| Q |
118 |
ttttgcctctctaagtatttaaatgttgcaattttgaccccctaataaaaataactatctttgatcccc |
186 |
Q |
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| T |
48106193 |
ttttgcctctctaagtatttaaatgttgcgattttgaccccctaataaaaataactatctttgatcccc |
48106261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 168
Target Start/End: Complemental strand, 19195496 - 19195454
Alignment:
| Q |
126 |
ctctaagtatttaaatgttgcaattttgaccccctaataaaaa |
168 |
Q |
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| T |
19195496 |
ctctaagttttaaaatgttgcaattttgaccccctattaaaaa |
19195454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 168
Target Start/End: Original strand, 28070565 - 28070595
Alignment:
| Q |
138 |
aaatgttgcaattttgaccccctaataaaaa |
168 |
Q |
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| T |
28070565 |
aaatgttgcaattttgaccccctaataaaaa |
28070595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 139 - 168
Target Start/End: Original strand, 121383 - 121412
Alignment:
| Q |
139 |
aatgttgcaattttgaccccctaataaaaa |
168 |
Q |
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| T |
121383 |
aatgttgcaattttgaccccctaataaaaa |
121412 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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