View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13067_low_4 (Length: 549)
Name: NF13067_low_4
Description: NF13067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13067_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 15 - 530
Target Start/End: Original strand, 8285822 - 8286351
Alignment:
| Q |
15 |
tcatcaaacgaatgagcatctggattggcttgcaaagctttttgcaagttctgcaacattaaggtattgtaagttataacagtcgtcaatttcaaacttt |
114 |
Q |
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| T |
8285822 |
tcatcaaacgaatgagcatctggattggcttgcaaagctttttgcaagttctgcaacattaaggtattgtaagttataacagtcgtcaatttcaaacttt |
8285921 |
T |
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| Q |
115 |
aagtagcaaagaatatttcaattttcaaactgtattatactcaaagcactgtagcaagtgtttttcgctatattatctatgaaatgtgccaagtcagaac |
214 |
Q |
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| T |
8285922 |
aagtagcagagaatatttcaattttcaaactgtattatactcaaagcactgtagcaagtgtttttcgctatattatctatgaaatgtgccaagtcagaac |
8286021 |
T |
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| Q |
215 |
aaaattttgaatcagtgttttgatgacggaagt--------------caaacatgccattgtggtctatggcaggcatcccttcacagattgcctaatat |
300 |
Q |
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| T |
8286022 |
aaaattttgaatcagtgttttgatgacggaagtcaaacatttgcatacaaacatgccattgcggtctatggcaggcatcccttcacagattgcctaatat |
8286121 |
T |
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| Q |
301 |
ggttgtcaaaaaatccacaacaccattctgccaaggccacaatttaacaaaactgttttcaatgaatggcacaaacttaatatatacaggaaaattacag |
400 |
Q |
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| T |
8286122 |
ggttgtcaaaaaatccgcaacaccattctgccaaggccacaatttaacaaaactgttttcaatgaatggcacaaacttaatatatacaggaaaattacag |
8286221 |
T |
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| Q |
401 |
tacctgagcaagtgtaacaatctctcctcgaacagcatactgacatttcagaacctatgcaggnnnnnnnnccattgtttcagacatgtaactgaagatc |
500 |
Q |
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| T |
8286222 |
tacctgagcaagtgtaacaatctctcctcgaacagcatactgacatttcagaacctatgcaggaaaaaaaaccattgtttcagacatgtaactgaagatc |
8286321 |
T |
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| Q |
501 |
aaatattggtgtaagtaaagtggagcaagt |
530 |
Q |
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| T |
8286322 |
aaatattggtgtaagtaaagtggagcaagt |
8286351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 385 - 463
Target Start/End: Original strand, 46624687 - 46624765
Alignment:
| Q |
385 |
tacaggaaaattacagtacctgagcaagtgtaacaatctctcctcgaacagcatactgacatttcagaacctatgcagg |
463 |
Q |
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||||||||| | |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||| |
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| T |
46624687 |
tacaggaaagtcacagtacctgagcaagtgtaacaatctctccttgaacaacatactgacatttcagaacctaagcagg |
46624765 |
T |
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