View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13067_low_5 (Length: 493)
Name: NF13067_low_5
Description: NF13067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13067_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 391; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 31 - 474
Target Start/End: Complemental strand, 10263710 - 10263269
Alignment:
| Q |
31 |
gaattatttgttcaataataaattacatagaaatggatgagaagtccgactttacatagacacaacaatcataccaaaaatatcctcaagtttaatttca |
130 |
Q |
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| T |
10263710 |
gaattatttgttcaataataaattacatagaaatggatgagaagtccgactttacata---acaacaatcataccaaaaatatcctcaagtttaatttca |
10263614 |
T |
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| Q |
131 |
attatactttcctactcatcatcttatcttaactttttaattt-cataggagtttcctccttattgtttcataccattgtgccctaaaagacaaatttta |
229 |
Q |
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| T |
10263613 |
attatactttcctactcatcatcttatcttaactttttaattttcataggagtttcctccttattgtttcataccattgtgccctaaaagacaaatttta |
10263514 |
T |
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| Q |
230 |
ttggatcaattcagaagaggaatacttaaagtcttttacgacacaacagtctcaacaatgaggaggtgttttacactcatttcatgagtacttaaattag |
329 |
Q |
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| T |
10263513 |
ttggatcaatccagaagagaaatacttaatgtcttttacgacacaacggtctcaacaacgaggaggcgttttacactcatttcatgagcactttaattag |
10263414 |
T |
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| Q |
330 |
atggacattgcaaggtgagacgggctgctattttatagactaatccttctctctactgctttagaactcccgatgtgggactgttataatagatttgttt |
429 |
Q |
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| T |
10263413 |
atggacattgcaaggtgagacgggctgctattttatagactaatccttctctctactgctttagaactcccgatgtgggactgttataatagatttgttt |
10263314 |
T |
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| Q |
430 |
gaatgcttttattagagagattgtaaatttctccgtcgagagaac |
474 |
Q |
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| T |
10263313 |
gaatgcttttattagagagattgtaaatttctccgtcgagagaac |
10263269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 373 - 437
Target Start/End: Complemental strand, 10245608 - 10245544
Alignment:
| Q |
373 |
tccttctctctactgctttagaactcccgatgtgggactgttataatagatttgtttgaatgctt |
437 |
Q |
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| T |
10245608 |
tccttctctctattgttttaaaactccccatgtgggactgtttccataggttggtttgaatgctt |
10245544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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