View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13067_low_9 (Length: 435)
Name: NF13067_low_9
Description: NF13067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13067_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 8 - 422
Target Start/End: Complemental strand, 6398275 - 6397858
Alignment:
| Q |
8 |
gcaaagggcaataacacaaacaaacattgattaatggtataatctaaaatctaaga---ctcaaatgcctttccaatggaatcaacaatcctccattgag |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
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| T |
6398275 |
gcaaagggcaataacacaaacaaacattgattaatggtataatctaaaatctaagaagacccaaatgcctttccaatggaatcaacaatcctccattgag |
6398176 |
T |
|
| Q |
105 |
attcaagtatcatacgaatcctcttattctccatctccaatctaaatctctctgtttctttcatcatctccatcttcatattttccaaccctataatcct |
204 |
Q |
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| T |
6398175 |
attcaagtatcatacgaatcctcttattctccatctccaatctaaatctctctgtttccttcatcatctccatcttcatattttccaaccctataatcct |
6398076 |
T |
|
| Q |
205 |
ctctgcaaaacttcttaactccgctgtcaaacccttcgccatcacatcttcctcttcctcttcctcctcatcacgttgtttctggttaagaatattatga |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
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| T |
6398075 |
ctctgcaaaacttcttaactccgctgtcaaacccttcgccatcacatcttcctcttcctcatcagtttcatcacgttgtttctggttaagaatattatga |
6397976 |
T |
|
| Q |
305 |
atactccttgacctagcagcagcgccgtcactatcgtcggagatagggtggttgtgagaaagaggtctgacggaaataggtaaaggaccacgttcaagat |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
6397975 |
atactccttgacctagcagcagcgccgtcactatcgtcggagatagggtggttgtgagaaagaggtctgacggagataggtaaaggaccacgttcaagat |
6397876 |
T |
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| Q |
405 |
catccatgagacgaaaat |
422 |
Q |
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|||||||||||||||||| |
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| T |
6397875 |
catccatgagacgaaaat |
6397858 |
T |
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