View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13068_high_10 (Length: 236)

Name: NF13068_high_10
Description: NF13068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13068_high_10
NF13068_high_10
[»] chr7 (7 HSPs)
chr7 (76-222)||(37526386-37526532)
chr7 (81-220)||(45235037-45235175)
chr7 (76-220)||(40167216-40167362)
chr7 (88-175)||(46767990-46768077)
chr7 (82-220)||(20078729-20078868)
chr7 (89-188)||(45358025-45358121)
chr7 (161-220)||(25778548-25778607)
[»] chr2 (7 HSPs)
chr2 (1-108)||(19905739-19905846)
chr2 (138-220)||(19905531-19905613)
chr2 (83-220)||(31938041-31938178)
chr2 (77-220)||(30762788-30762923)
chr2 (89-138)||(30827681-30827730)
chr2 (126-217)||(4809540-4809632)
chr2 (2-50)||(38396998-38397046)
[»] chr1 (11 HSPs)
chr1 (101-207)||(23930343-23930450)
chr1 (81-220)||(40032247-40032386)
chr1 (85-220)||(527930-528066)
chr1 (81-222)||(15536237-15536374)
chr1 (75-210)||(40205092-40205228)
chr1 (112-222)||(18341597-18341707)
chr1 (81-206)||(47148320-47148445)
chr1 (81-151)||(22545131-22545202)
chr1 (124-220)||(44309580-44309676)
chr1 (156-222)||(34643989-34644055)
chr1 (112-220)||(50154081-50154189)
[»] chr8 (6 HSPs)
chr8 (81-211)||(30467145-30467275)
chr8 (81-222)||(7243797-7243938)
chr8 (112-222)||(38828918-38829027)
chr8 (89-215)||(37244873-37244997)
chr8 (110-210)||(3447716-3447816)
chr8 (89-222)||(23690175-23690304)
[»] chr5 (12 HSPs)
chr5 (81-214)||(12164497-12164632)
chr5 (81-210)||(7719661-7719790)
chr5 (81-222)||(36447594-36447735)
chr5 (124-220)||(28234659-28234755)
chr5 (162-220)||(14913591-14913649)
chr5 (164-210)||(15405374-15405420)
chr5 (161-217)||(3737117-3737173)
chr5 (119-185)||(15405420-15405486)
chr5 (82-150)||(14913958-14914026)
chr5 (2-49)||(29340913-29340960)
chr5 (96-210)||(36282580-36282694)
chr5 (155-194)||(35607324-35607364)
[»] chr3 (6 HSPs)
chr3 (81-207)||(54776863-54776989)
chr3 (94-213)||(12907285-12907404)
chr3 (81-224)||(47804048-47804189)
chr3 (81-135)||(12906567-12906621)
chr3 (3-48)||(29586254-29586299)
chr3 (177-210)||(54433093-54433126)
[»] chr6 (6 HSPs)
chr6 (81-207)||(5330584-5330710)
chr6 (81-220)||(24324257-24324392)
chr6 (81-163)||(32429516-32429598)
chr6 (110-177)||(2158453-2158520)
chr6 (162-207)||(32429196-32429241)
chr6 (136-195)||(6563829-6563888)
[»] chr4 (10 HSPs)
chr4 (76-151)||(5472699-5472774)
chr4 (139-220)||(5472595-5472676)
chr4 (105-197)||(23850024-23850116)
chr4 (120-213)||(35619377-35619472)
chr4 (112-220)||(22027126-22027235)
chr4 (126-208)||(38499737-38499819)
chr4 (134-222)||(24294318-24294405)
chr4 (81-128)||(13073037-13073084)
chr4 (102-213)||(54166679-54166789)
chr4 (164-215)||(52347512-52347563)
[»] scaffold0221 (1 HSPs)
scaffold0221 (104-220)||(6630-6746)


Alignment Details
Target: chr7 (Bit Score: 99; Significance: 5e-49; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 76 - 222
Target Start/End: Original strand, 37526386 - 37526532
Alignment:
Q  76 gggacttggatcctctccattgaaaattttctcgagttttctccattttcaatctccaccattaaaatacaacaactacttttcattataatttaattct 175  Q
    |||| ||||||| ||||||||||||||| | |  |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||    
T  37526386 gggatttggatcatctccattgaaaattcttttaagttttctccattttcaatctccaccattaaaatacaacaaccactttttattataatttaattct 37526485  T
Q  176 cattttctctctcatatttgatggttgagatttcacttgaaaaaatt 222  Q
    |||||||||||| || |||||||||||||||| ||||||| ||||||    
T  37526486 cattttctctcttatgtttgatggttgagattccacttgagaaaatt 37526532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 81 - 220
Target Start/End: Complemental strand, 45235175 - 45235037
Alignment:
Q  81 ttggatcctctccattgaaaattttctcgagttttctccattttcaatctccaccattaaaatacaacaactacttttcattataatttaattctcattt 180  Q
    ||||||| ||| ||||||||||| |||  |||||||||||||||||||||||| |||| |||||||||||| |||||| |||| ||||||||||||||||    
T  45235175 ttggatcatcttcattgaaaattctcttaagttttctccattttcaatctccatcattgaaatacaacaac-actttttattaaaatttaattctcattt 45235077  T
Q  181 tctctctcatatttgatggttgagatttcacttgaaaaaa 220  Q
    ||||||| || |||||||||||||||||||||||| ||||    
T  45235076 tctctcttatgtttgatggttgagatttcacttgagaaaa 45235037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 76 - 220
Target Start/End: Original strand, 40167216 - 40167362
Alignment:
Q  76 gggacttggatcctctccattgaaaattttctcgagttttctccattttcaatctccaccattaaaatacaacaactacttttcattata--atttaatt 173  Q
    |||| |||||| ||||||||||||| |||||||   ||||||||||||| |||||||| ||||||||  ||  ||| ||||||  |||||  |||||| |    
T  40167216 gggatttggattctctccattgaaatttttctcagattttctccatttttaatctccatcattaaaagccattaaccacttttttttatacaatttaact 40167315  T
Q  174 ctcattttctctctcatatttgatggttgagatttcacttgaaaaaa 220  Q
    ||||||||||||||||||||| |||||| ||||||||||||| ||||    
T  40167316 ctcattttctctctcatatttaatggttaagatttcacttgagaaaa 40167362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 88 - 175
Target Start/End: Complemental strand, 46768077 - 46767990
Alignment:
Q  88 ctctccattgaaaattttctcgagttttctccattttcaatctccaccattaaaatacaacaactacttttcattataatttaattct 175  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| | |||||| ||||||  ||||||  |||||||||||||||    
T  46768077 ctctccattgaaaattttctcaagttttctccattttcaatctccacaaataaaatgcaacaagcacttttttttataatttaattct 46767990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 82 - 220
Target Start/End: Original strand, 20078729 - 20078868
Alignment:
Q  82 tggatcctctccattgaaaattttctcgagttttctccattttcaatctccaccattaaaatacaacaactacttttcatt-ataatttaattctcattt 180  Q
    ||||| |||| |||||||||||||||| |  |||||||||| |||||||| | || |||||||||||||||||||||  ||  |||||||||||||||||    
T  20078729 tggattctcttcattgaaaattttctccaactttctccattgtcaatctctatcaataaaatacaacaactacttttttttcttaatttaattctcattt 20078828  T
Q  181 tctctctcatatttgatggttgagatttcacttgaaaaaa 220  Q
    ||||| | |  ||| ||||||| |||| || |||||||||    
T  20078829 tctcttttaagtttaatggttgcgattccatttgaaaaaa 20078868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 89 - 188
Target Start/End: Complemental strand, 45358121 - 45358025
Alignment:
Q  89 tctccattgaaaattttctcgagttttctccattttcaatctccaccattaaaatacaacaactacttttcattataatttaattctcattttctctctc 188  Q
    |||||||| |||||| |||| | |||||||||||||||| || |||| ||||||||||||||| | ||||| || |||||| |||   ||||||||||||    
T  45358121 tctccattaaaaattctctcaaattttctccattttcaaacttcacccttaaaatacaacaaccatttttccttgtaatttcatt---attttctctctc 45358025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 220
Target Start/End: Complemental strand, 25778607 - 25778548
Alignment:
Q  161 ttataatttaattctcattttctctctcatatttgatggttgagatttcacttgaaaaaa 220  Q
    ||||||||||| ||||| ||||||| |||| ||| |||||||| ||||||||| ||||||    
T  25778607 ttataatttaactctcactttctctttcattttttatggttgaaatttcacttaaaaaaa 25778548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 88; Significance: 2e-42; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 19905846 - 19905739
Alignment:
Q  1 tcaaatggatgaaatggagagaaaaataaattgataagatcttaactcgtagataagagatcgggttgtagatacgggacttggatcctctccattgaaa 100  Q
    |||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  19905846 tcaaatggatgaaatggagagaacgataaattgagaagatcttaactcgtagataagagattgggttgtagatacaggacttggatcctctccattgaaa 19905747  T
Q  101 attttctc 108  Q
    ||||||||    
T  19905746 attttctc 19905739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 138 - 220
Target Start/End: Complemental strand, 19905613 - 19905531
Alignment:
Q  138 taaaatacaacaactacttttcattataatttaattctcattttctctctcatatttgatggttgagatttcacttgaaaaaa 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19905613 taaaatacaacaactacttttcattataatttaattctcattttctctctcatatttgatggttgagatttcacttgaaaaaa 19905531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 83 - 220
Target Start/End: Original strand, 31938041 - 31938178
Alignment:
Q  83 ggatcctctccattgaaaattttctcgagttttctccattttcaatctccacca-ttaaaatacaacaactacttttcattataatttaattctcatttt 181  Q
    |||||||||||||||||||||||||| | |||||||||||||||||||  |||| ||||||||  ||||||||||| ||||||||||||||||||| |||    
T  31938041 ggatcctctccattgaaaattttctcaaattttctccattttcaatctttaccaattaaaatattacaactacttt-cattataatttaattctcacttt 31938139  T
Q  182 ctctctcatatttgatggttgagatttcacttgaaaaaa 220  Q
    |||||||||  ||||||||||||||||||| ||| ||||    
T  31938140 ctctctcatgattgatggttgagatttcacatgagaaaa 31938178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 77 - 220
Target Start/End: Original strand, 30762788 - 30762923
Alignment:
Q  77 ggacttggatcctctccattgaaaattttctcgagttttctccattttcaatctccaccattaaaatacaacaactacttttcattataatttaattctc 176  Q
    |||||||||| ||||||||||||| |||| ||  |||||||||||||| ||| |||| || |||||| |   | | | ||||| ||||||||            
T  30762788 ggacttggattctctccattgaaatttttttcaggttttctccatttttaatatccatcactaaaatccgctatcaatttttctttataatt-------- 30762879  T
Q  177 attttctctctcatatttgatggttgagatttcacttgaaaaaa 220  Q
    |||||||||||| ||||| |||||||||||||||||||| ||||    
T  30762880 attttctctctcttatttaatggttgagatttcacttgagaaaa 30762923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 138
Target Start/End: Original strand, 30827681 - 30827730
Alignment:
Q  89 tctccattgaaaattttctcgagttttctccattttcaatctccaccatt 138  Q
    ||||| ||||||||| |||| |||||||||||||||||||||||| ||||    
T  30827681 tctccgttgaaaattctctcaagttttctccattttcaatctccatcatt 30827730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 217
Target Start/End: Complemental strand, 4809632 - 4809540
Alignment:
Q  126 aatctccaccattaaaatacaacaactacttttcattataatttaattctca-ttttctctctcatatttgatggttgagatttcacttgaaa 217  Q
    |||||| ||||||||||| ||  ||||||||||| ||||||||||| ||| | |||| ||||| || |||||||||||| |||| | ||||||    
T  4809632 aatctctaccattaaaattcactaactacttttctttataatttaactcttatttttttctctaatgtttgatggttgaaattttatttgaaa 4809540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 38397046 - 38396998
Alignment:
Q  2 caaatggatgaaatggagagaaaaataaattgataagatcttaactcgt 50  Q
    ||||| |||||||||||||||||||||||| || || ||||||||||||    
T  38397046 caaattgatgaaatggagagaaaaataaatggagaatatcttaactcgt 38396998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 5e-40; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 101 - 207
Target Start/End: Complemental strand, 23930450 - 23930343
Alignment:
Q  101 attttctcgagttttctccattttcaatctccaccattaaaatacaacaactac-ttttcattataatttaattctcattttctctctcatatttgatgg 199  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||    
T  23930450 attttcttaagttttctccattttcaatctccaccattaaaatacaacaaccaaattttcattataatttaattctcattttctctctcatatttgatgg 23930351  T
Q  200 ttgagatt 207  Q
    ||||||||    
T  23930350 ttgagatt 23930343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 81 - 220
Target Start/End: Original strand, 40032247 - 40032386
Alignment:
Q  81 ttggatcctctccattgaaaattttctcgagttttctccattttcaatctccaccattaaaatacaacaactacttttcattataatttaattctcattt 180  Q
    ||||||| | |||||||||| |||| || | ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||    
T  40032247 ttggatcatttccattgaaatttttttcaaattttctccattttcaatctacaccattaaaatacaacaaccacttttcattataatttaattctcactt 40032346  T
Q  181 tctctctcatatttgatggttgagatttcacttgaaaaaa 220  Q
    ||||||||||  ||||||||||||||| ||| ||| ||||    
T  40032347 tctctctcatgattgatggttgagattccacatgagaaaa 40032386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 85 - 220
Target Start/End: Complemental strand, 528066 - 527930
Alignment:
Q  85 atcctctccattgaaaattttctcgagttttctccattttcaatctccaccattaaaa-tacaacaactacttttcattataatttaattctcattttct 183  Q
    |||||||||||| ||||||||||| | ||||||||||||||||| ||||| ||||||| ||||||||| ||||||||||||||||||||||||| |||||    
T  528066 atcctctccattaaaaattttctcaaattttctccattttcaatttccactattaaaaatacaacaaccacttttcattataatttaattctcactttct 527967  T
Q  184 ctctcatatttgatggttgagatttcacttgaaaaaa 220  Q
    |||||||  ||||||||||||||| ||| ||| ||||    
T  527966 ctctcatgattgatggttgagattccacatgagaaaa 527930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 81 - 222
Target Start/End: Original strand, 15536237 - 15536374
Alignment:
Q  81 ttggatcctctccattgaaaattttctcga-gttttctccattttcaatctccaccattaaaatacaacaactacttttcattataatttaattctcatt 179  Q
    |||||| ||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||  ||||   || |||||||||||||| |    
T  15536237 ttggattctctccattgaaaattttctctaagttttctccattttcaatcttcaccattaaaatacaacaac--cttt---ttttaatttaattctcaat 15536331  T
Q  180 ttctctctcatatttgatggttgagatttcacttgaaaaaatt 222  Q
    ||||||||||| ||| || ||||||||| ||||||| ||||||    
T  15536332 ttctctctcatgtttaattgttgagattccacttgagaaaatt 15536374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 75 - 210
Target Start/End: Original strand, 40205092 - 40205228
Alignment:
Q  75 cgggacttggatcctctccattgaaaattttct-cgagttttctccattttcaatctccaccattaaaatacaacaactacttttcattataatttaatt 173  Q
    ||||| |||||||||| ||||||||| |||| | | ||||||||||||||| |||||||| ||||||||  ||  ||| ||||||| |||||||||||      
T  40205092 cgggatttggatcctccccattgaaattttttttcaagttttctccatttttaatctccatcattaaaacccactaaccacttttctttataatttaaca 40205191  T
Q  174 ctcattttctctctcatatttgatggttgagatttca 210  Q
    |||||||||||||||||||||||||||||||||||||    
T  40205192 ctcattttctctctcatatttgatggttgagatttca 40205228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 112 - 222
Target Start/End: Complemental strand, 18341707 - 18341597
Alignment:
Q  112 ttttctccattttcaatctccaccattaaaatacaacaactacttttcattataatttaattctcattttctctctcatatttgatggttgagatttcac 211  Q
    ||||||||||||| |||||||| ||||||||||||||||||| ||||| ||||  |||||||||||||||||||||||| ||||||| |||||| | |||    
T  18341707 ttttctccatttttaatctccaacattaaaatacaacaactatttttctttattttttaattctcattttctctctcatgtttgatgattgagaatccac 18341608  T
Q  212 ttgaaaaaatt 222  Q
    ||  |||||||    
T  18341607 ttagaaaaatt 18341597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 81 - 206
Target Start/End: Complemental strand, 47148445 - 47148320
Alignment:
Q  81 ttggatcctctccattgaaaattttctcgagttttctccattttcaatctccaccattaaaatacaacaactacttttcattataatttaattctcattt 180  Q
    |||||| ||||||||| ||| || |||| |||||||||| || | ||| || |||||||||||| | || | ||||||| ||||||||||||| ||||||    
T  47148445 ttggattctctccattaaaatttctctcaagttttctccgttcttaatttctaccattaaaatatatcagccacttttctttataatttaattttcattt 47148346  T
Q  181 tctctctcatatttgatggttgagat 206  Q
    | |||||||| |||||||||||||||    
T  47148345 tatctctcatgtttgatggttgagat 47148320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 81 - 151
Target Start/End: Original strand, 22545131 - 22545202
Alignment:
Q  81 ttggatcctctccattgaaaattttctcga-gttttctccattttcaatctccaccattaaaatacaacaac 151  Q
    |||||| ||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||    
T  22545131 ttggattctctccattgaaaattttctctaagttttctccattttcaatcttcaccattaaaatacaacaac 22545202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 124 - 220
Target Start/End: Complemental strand, 44309676 - 44309580
Alignment:
Q  124 tcaatctccaccattaaaatacaacaactacttttcattataatttaattctcattttctctctcatatttgatggttgagatttcacttgaaaaaa 220  Q
    ||||||| |||| || ||||||| ||||  |||||  || |||||||||| |||||| ||||| |||||||||||||||||||||||||| ||||||    
T  44309676 tcaatctacaccgtttaaatacaccaacctcttttacttttaatttaattttcatttcctctcccatatttgatggttgagatttcactttaaaaaa 44309580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 156 - 222
Target Start/End: Complemental strand, 34644055 - 34643989
Alignment:
Q  156 tttcattataatttaattctcattttctctctcatatttgatggttgagatttcacttgaaaaaatt 222  Q
    |||| ||||||||||||||| ||||||||| |||| |||||| ||||||||||||||||| ||||||    
T  34644055 tttctttataatttaattcttattttctctttcatgtttgatagttgagatttcacttgagaaaatt 34643989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 112 - 220
Target Start/End: Original strand, 50154081 - 50154189
Alignment:
Q  112 ttttctccattttcaatctccaccattaaaatacaacaactacttttcattataatttaattctcattttctctctcatatttgatggttgagatttcac 211  Q
    ||||||| ||||| |||||||| ||||||||  || |||| ||||||| ||||||||||| ||||| ||||||| |||| | | |||||| | |||||||    
T  50154081 ttttctcaatttttaatctccatcattaaaactcatcaaccacttttctttataatttaactctcactttctctatcatgtctaatggttaaaatttcac 50154180  T
Q  212 ttgaaaaaa 220  Q
     ||||||||    
T  50154181 atgaaaaaa 50154189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 81 - 211
Target Start/End: Original strand, 30467145 - 30467275
Alignment:
Q  81 ttggatcctctccattgaaaattttctcgagttttctccattttcaatctccaccattaaaatacaacaactacttttcattataatttaattctcattt 180  Q
    |||||| |||||||||||||||| |||  | ||||||||||||||||||| || ||||| ||||||||||| ||||||| ||||||||||||| ||| ||    
T  30467145 ttggattctctccattgaaaattctctgaaattttctccattttcaatcttcatcattataatacaacaaccacttttctttataatttaattttcactt 30467244  T
Q  181 tctctctcatatttgatggttgagatttcac 211  Q
    |||||||||||||||||||||||||||||||    
T  30467245 tctctctcatatttgatggttgagatttcac 30467275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 81 - 222
Target Start/End: Original strand, 7243797 - 7243938
Alignment:
Q  81 ttggatcctctccattgaaaattttctcgagttttctccattttcaatctccaccattaaaatacaacaactacttttcattataatttaattctcattt 180  Q
    ||||||||||||| |||||||||||||  | ||||||||||||||||||| ||| |||||||||||||||||||| ||| ||||||||||||| ||| ||    
T  7243797 ttggatcctctccgttgaaaattttcttcaattttctccattttcaatcttcactattaaaatacaacaactactattcgttataatttaattttcactt 7243896  T
Q  181 tctctctcatatttgatggttgagatttcacttgaaaaaatt 222  Q
    ||| ||||||  ||||||||||||||||||| ||| ||||||    
T  7243897 tctttctcatgattgatggttgagatttcacatgagaaaatt 7243938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 112 - 222
Target Start/End: Original strand, 38828918 - 38829027
Alignment:
Q  112 ttttctccattttcaatctccaccattaaaatacaacaactacttttcattataatttaattctcattttctctctcatatttgatggttgagatttcac 211  Q
    ||||||||||||||||| | ||| |||||||||||| ||| | ||||||||||||||||||||| |||||||||||||||||| |||||||||||| |||    
T  38828918 ttttctccattttcaattttcac-attaaaatacaataaccaattttcattataatttaattcttattttctctctcatatttaatggttgagattccac 38829016  T
Q  212 ttgaaaaaatt 222  Q
    |||| ||||||    
T  38829017 ttgagaaaatt 38829027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 89 - 215
Target Start/End: Complemental strand, 37244997 - 37244873
Alignment:
Q  89 tctccattgaaaattttctcgagttttctccattttcaatctccaccattaaaatacaacaactacttttcattataatttaattctcattttctctctc 188  Q
    |||||||||||||||||||  | |||||| |||||||||||| |||||||||||||||||||| | ||||  ||||||||||||||||| ||||||||||    
T  37244997 tctccattgaaaattttctgaacttttcttcattttcaatcttcaccattaaaatacaacaaccattttt--ttataatttaattctcactttctctctc 37244900  T
Q  189 atatttgatggttgagatttcacttga 215  Q
    || ||| || || |||||| |||||||    
T  37244899 atgtttaattgtggagattccacttga 37244873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 110 - 210
Target Start/End: Complemental strand, 3447816 - 3447716
Alignment:
Q  110 agttttctccattttcaatctccaccattaaaatacaacaactacttttcattataatttaattctcattttctctctcatatttgatggttgagatttc 209  Q
    ||||||||||||||| |||||||||||||||||| ||   || ||||||| |||||||||||  ||||||||||||||||||||| ||||||||||||||    
T  3447816 agttttctccatttttaatctccaccattaaaatccattgaccacttttctttataatttaacactcattttctctctcatatttaatggttgagatttc 3447717  T
Q  210 a 210  Q
    |    
T  3447716 a 3447716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 89 - 222
Target Start/End: Original strand, 23690175 - 23690304
Alignment:
Q  89 tctccattgaaaattttctcga-gttttctccattttcaatctccaccattaaaatacaacaactacttttcattataatttaattctcattttctctct 187  Q
    |||||||||||||||||||| | ||||||| |||||||||||| ||||||||||||||||||||  ||||   || |||||||||||| | |||||||||    
T  23690175 tctccattgaaaattttctctaagttttcttcattttcaatcttcaccattaaaatacaacaac--cttt---ttttaatttaattctgaatttctctct 23690269  T
Q  188 catatttgatggttgagatttcacttgaaaaaatt 222  Q
    ||| ||| || ||||||||| ||||||| ||||||    
T  23690270 catgtttaattgttgagattccacttgagaaaatt 23690304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 77; Significance: 7e-36; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 81 - 214
Target Start/End: Complemental strand, 12164632 - 12164497
Alignment:
Q  81 ttggatcctctccattgaaaattttctcgagttttctccattttcaatctccaccattaaaatacaacaactacttttcattataatttaattctca--t 178  Q
    |||||| ||||||||||||||||||||  ||||||||  |||||||||||||| | ||||||||||||||||| |||||||||||||||| ||||||  |    
T  12164632 ttggattctctccattgaaaattttctgaagttttctttattttcaatctccatctttaaaatacaacaactatttttcattataatttatttctcactt 12164533  T
Q  179 tttctctctcatatttgatggttgagatttcacttg 214  Q
    | |||||||||| |||||||||||||||| ||||||    
T  12164532 tctctctctcatgtttgatggttgagattccacttg 12164497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 81 - 210
Target Start/End: Original strand, 7719661 - 7719790
Alignment:
Q  81 ttggatcctctccattgaaaattttctcgagttttctccattttcaatctccaccattaaaatacaacaactacttttcattataatttaattctcattt 180  Q
    ||||||||||| ||||||||| ||| || ||||||||||||||| ||| |||||||||||||  ||  ||| ||||||| |||||||||||  |||||||    
T  7719661 ttggatcctcttcattgaaaactttttcaagttttctccatttttaatatccaccattaaaaatcactaaccacttttctttataatttaacactcattt 7719760  T
Q  181 tctctctcatatttgatggttgagatttca 210  Q
    ||||||||||||||||||||||||||||||    
T  7719761 tctctctcatatttgatggttgagatttca 7719790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 81 - 222
Target Start/End: Original strand, 36447594 - 36447735
Alignment:
Q  81 ttggatcctctccattgaaaattttctcgagttttctccattttcaatctccaccattaaaatacaacaactacttttcattataatttaattctcattt 180  Q
    |||||||||||  ||||||||||||||  | ||||||||||||||||||| ||||||||||||||||| |||| || | | |||||||||||| ||| ||    
T  36447594 ttggatcctctttattgaaaattttcttcaattttctccattttcaatcttcaccattaaaatacaactactatttgttagtataatttaattatcactt 36447693  T
Q  181 tctctctcatatttgatggttgagatttcacttgaaaaaatt 222  Q
    ||||||||||  |||||||||||||||| || ||||||||||    
T  36447694 tctctctcatgattgatggttgagattttacatgaaaaaatt 36447735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 124 - 220
Target Start/End: Complemental strand, 28234755 - 28234659
Alignment:
Q  124 tcaatctccaccattaaaatacaacaactacttttcattataatttaattctcattttctctctcatatttgatggttgagatttcacttgaaaaaa 220  Q
    |||||||||||  ||||||||||||||  ||||||||||||||||||||||||||||||||||||||  ||||||||||||||| ||| ||| ||||    
T  28234755 tcaatctccacggttaaaatacaacaatcacttttcattataatttaattctcattttctctctcatgattgatggttgagattccacatgagaaaa 28234659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 162 - 220
Target Start/End: Complemental strand, 14913649 - 14913591
Alignment:
Q  162 tataatttaattctcattttctctctcatatttgatggttgagatttcacttgaaaaaa 220  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||    
T  14913649 tataatttaattctcactttctctctcatgtttgatggttgagatttcacttgagaaaa 14913591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 164 - 210
Target Start/End: Complemental strand, 15405420 - 15405374
Alignment:
Q  164 taatttaattctcattttctctctcatatttgatggttgagatttca 210  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||    
T  15405420 taatttaatactcattttctctctcatatttgatggttgagatttca 15405374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 161 - 217
Target Start/End: Complemental strand, 3737173 - 3737117
Alignment:
Q  161 ttataatttaattctcattttctctctcatatttgatggttgagatttcacttgaaa 217  Q
    ||||||||||||| ||| ||| |||||||| |||||||||||||||| |||||||||    
T  3737173 ttataatttaattatcaatttgtctctcatgtttgatggttgagattccacttgaaa 3737117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 119 - 185
Target Start/End: Complemental strand, 15405486 - 15405420
Alignment:
Q  119 cattttcaatctccaccattaaaatacaacaactacttttcattataatttaattctcattttctct 185  Q
    |||||| |||||||||||||||||  ||  ||| |||||||||| ||||||||| ||||||||||||    
T  15405486 catttttaatctccaccattaaaacccactaaccacttttcattgtaatttaatactcattttctct 15405420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 150
Target Start/End: Complemental strand, 14914026 - 14913958
Alignment:
Q  82 tggatcctctccattgaaaattttctcgagttttctccattttcaatctccaccattaaaatacaacaa 150  Q
    |||||||||||||||||   |||| || ||||||||| ||||| |||||||| | ||||||||||||||    
T  14914026 tggatcctctccattgatttttttttcaagttttctctatttttaatctccatcgttaaaatacaacaa 14913958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 49
Target Start/End: Complemental strand, 29340960 - 29340913
Alignment:
Q  2 caaatggatgaaatggagagaaaaataaattgataagatcttaactcg 49  Q
    |||||| ||||||||||||||| ||||||| || ||||||||||||||    
T  29340960 caaatgaatgaaatggagagaataataaatggagaagatcttaactcg 29340913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 210
Target Start/End: Complemental strand, 36282694 - 36282580
Alignment:
Q  96 tgaaaattttctcgagttttctccattttcaatctccaccattaaaatacaacaactacttttcattataatttaattctcattttctctctcatatttg 195  Q
    |||||||||| |||| ||||||||||||||||||| ||   ||||||| |  | |||||||||| |  |||||||| | |  |||||||||  || ||||    
T  36282694 tgaaaattttgtcgacttttctccattttcaatctacatggttaaaatgctcctactacttttcttagtaatttaactttagttttctctcatatgtttg 36282595  T
Q  196 atggttgagatttca 210  Q
    | |||||||||||||    
T  36282594 aaggttgagatttca 36282580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 194
Target Start/End: Original strand, 35607324 - 35607364
Alignment:
Q  155 ttttcattataatttaat-tctcattttctctctcatattt 194  Q
    ||||| |||||||||||| ||||||||||||||||||||||    
T  35607324 ttttctttataatttaatatctcattttctctctcatattt 35607364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 81 - 207
Target Start/End: Original strand, 54776863 - 54776989
Alignment:
Q  81 ttggatcctctccattgaaaattttctcgagttttctccattttcaatctccaccattaaaatacaacaactacttttcattataatttaattctcattt 180  Q
    |||||| ||||||||||||| ||||||| ||||||||||||||| |||||| |||| |||||  ||  ||| ||||||| ||||||||||||||||||||    
T  54776863 ttggattctctccattgaaatttttctcaagttttctccatttttaatctctaccactaaaacccactaaccacttttctttataatttaattctcattt 54776962  T
Q  181 tctctctcatatttgatggttgagatt 207  Q
    ||||| |||||||||||||||||||||    
T  54776963 tctctttcatatttgatggttgagatt 54776989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 94 - 213
Target Start/End: Original strand, 12907285 - 12907404
Alignment:
Q  94 attgaaaattttctcgagttttctccattttcaatctccaccattaaaatacaacaactacttttcattataatttaattctcattttctctctcatatt 193  Q
    ||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||  |||||| ||||||| |||||||||| ||| |||||||| ||    
T  12907285 attgaaaattttctcaagttttttccattttcaatctccacctttaaaatacaacaagcactttttattataacttaattctcactttttctctcatgtt 12907384  T
Q  194 tgatggttgagatttcactt 213  Q
    | |||||||| ||| |||||    
T  12907385 taatggttgaaattacactt 12907404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 81 - 224
Target Start/End: Original strand, 47804048 - 47804189
Alignment:
Q  81 ttggatcctctccattgaaaattttctcgagttttctccattttcaatctccaccattaaaatacaacaactacttttcattataatttaattctcattt 180  Q
    |||||| ||||||||||||||||  ||| | ||||||||||||||||| | ||||||| ||| ||| |||| ||||||| ||| ||||||| |||||| |    
T  47804048 ttggattctctccattgaaaatt--ctcaatttttctccattttcaatattcaccatttaaacacaccaaccacttttcttta-aatttaactctcatct 47804144  T
Q  181 tctctctcatatttgatggttgagatttcacttga-aaaaattga 224  Q
    | | ||||||||||||||||||||||| ||||||| |||||||||    
T  47804145 tgtttctcatatttgatggttgagattccacttgagaaaaattga 47804189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 81 - 135
Target Start/End: Original strand, 12906567 - 12906621
Alignment:
Q  81 ttggatcctctccattgaaaattttctcgagttttctccattttcaatctccacc 135  Q
    |||||| ||||| ||||||||||||||| |||||| |||||||||||||||||||    
T  12906567 ttggattctctctattgaaaattttctcaagttttttccattttcaatctccacc 12906621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 29586299 - 29586254
Alignment:
Q  3 aaatggatgaaatggagagaaaaataaattgataagatcttaactc 48  Q
    ||||||||||||||||||||| ||||||| || | |||||||||||    
T  29586299 aaatggatgaaatggagagaataataaatggagatgatcttaactc 29586254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 210
Target Start/End: Complemental strand, 54433126 - 54433093
Alignment:
Q  177 attttctctctcatatttgatggttgagatttca 210  Q
    ||||||||| ||||||||||||||||||||||||    
T  54433126 attttctctttcatatttgatggttgagatttca 54433093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 7e-30; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 81 - 207
Target Start/End: Original strand, 5330584 - 5330710
Alignment:
Q  81 ttggatcctctccattgaaaattttctcgagttttctccattttcaatctccaccattaaaatacaacaactacttttcattataatttaattctcattt 180  Q
    |||||| ||||||||||||| |||| || | ||||||||||||| |||||| |||| |||||  ||  ||| ||||||| ||||||||||||||||||||    
T  5330584 ttggattctctccattgaaatttttttcaaattttctccatttttaatctctaccactaaaacccactaaccacttttctttataatttaattctcattt 5330683  T
Q  181 tctctctcatatttgatggttgagatt 207  Q
    ||||| |||||||||||||||||||||    
T  5330684 tctctttcatatttgatggttgagatt 5330710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 81 - 220
Target Start/End: Original strand, 24324257 - 24324392
Alignment:
Q  81 ttggatcctctccattgaaaattttctcgagttttctccattttcaatctccaccattaaaatacaacaactacttttcattataatttaattctcattt 180  Q
    ||||||| |||| ||||||||||||||| | |||| |||||||||| |||| |||||||||||||||||||||||||||||||    |||||| ||| ||    
T  24324257 ttggatcttctcaattgaaaattttctcaaattttatccattttcattctcaaccattaaaatacaacaactacttttcatta----ttaattatcactt 24324352  T
Q  181 tctctctcatatttgatggttgagatttcacttgaaaaaa 220  Q
    ||||||||||  ||||||||||||||| ||| ||| ||||    
T  24324353 tctctctcatgattgatggttgagattccacatgagaaaa 24324392  T

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Target: chr6; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 81 - 163
Target Start/End: Complemental strand, 32429598 - 32429516
Alignment:
Q  81 ttggatcctctccattgaaaattttctcgagttttctccattttcaatctccaccattaaaatacaacaactacttttcatta 163  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||| |||||||    
T  32429598 ttggatcctctccattgaaaattttctcaagttttctccattttcaatctccaccattaaaatataacaaccactattcatta 32429516  T

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Target: chr6; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 110 - 177
Target Start/End: Original strand, 2158453 - 2158520
Alignment:
Q  110 agttttctccattttcaatctccaccattaaaatacaacaactacttttcattataatttaattctca 177  Q
    |||||||||||||||||||||||||||||||||||||||||  | ||||| || ||||||||||||||    
T  2158453 agttttctccattttcaatctccaccattaaaatacaacaatcatttttctttgtaatttaattctca 2158520  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 32429241 - 32429196
Alignment:
Q  162 tataatttaattctcattttctctctcatatttgatggttgagatt 207  Q
    |||||||||||||||| ||||||||||||| |||||||||||||||    
T  32429241 tataatttaattctcactttctctctcataattgatggttgagatt 32429196  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 195
Target Start/End: Complemental strand, 6563888 - 6563829
Alignment:
Q  136 attaaaatacaacaactacttttcattataatttaattctcattttctctctcatatttg 195  Q
    ||||||||||||||| || ||||| ||||||||||||| ||| ||||||| |||| ||||    
T  6563888 attaaaatacaacaattatttttctttataatttaattttcaatttctctttcatgtttg 6563829  T

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Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 76 - 151
Target Start/End: Complemental strand, 5472774 - 5472699
Alignment:
Q  76 gggacttggatcctctccattgaaaattttctcgagttttctccattttcaatctccaccattaaaatacaacaac 151  Q
    |||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||    
T  5472774 gggacttgaatcctctccattgaaaattttctcaagttttcttcattttcaatctccaccattaaaacacaacaac 5472699  T

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Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 139 - 220
Target Start/End: Complemental strand, 5472676 - 5472595
Alignment:
Q  139 aaaatacaacaactacttttcattataatttaattctcattttctctctcatatttgatggttgagatttcacttgaaaaaa 220  Q
    |||| |||||||| ||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||||||||| ||||    
T  5472676 aaaacacaacaacgacttttcattataatttaattctcactttctctctcatgtttgatgattgagatttcacttgagaaaa 5472595  T

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Target: chr4; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 105 - 197
Target Start/End: Original strand, 23850024 - 23850116
Alignment:
Q  105 tctcgagttttctccattttcaatctccaccattaaaatacaacaactacttttcattataatttaattctcattttctctctcatatttgat 197  Q
    |||| |||||||||||||||||||||| ||||||||||||| ||||  ||||||| ||||||| ||| ||||| |||||||||||||||||||    
T  23850024 tctcaagttttctccattttcaatctctaccattaaaataccacaatcacttttctttataatctaactctcactttctctctcatatttgat 23850116  T

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Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 120 - 213
Target Start/End: Original strand, 35619377 - 35619472
Alignment:
Q  120 attttcaatctccaccattaaaatacaacaactacttttcatt--ataatttaattctcattttctctctcatatttgatggttgagatttcactt 213  Q
    |||||||||||||||| ||||||||||||||| ||||||  ||  ||||||||||||||| ||||| |||||| ||| |||||||||||| |||||    
T  35619377 attttcaatctccaccgttaaaatacaacaaccacttttttttttataatttaattctcactttctatctcatgtttaatggttgagattccactt 35619472  T

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Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 112 - 220
Target Start/End: Original strand, 22027126 - 22027235
Alignment:
Q  112 ttttctccattttcaatctccaccattaaaatacaacaactacttttcattataatttaattctcattttctctc--tcatatttgatggttgagatttc 209  Q
    ||||||||||||||| ||||||   |||||| ||| |||||||||||| ||||||||||| | | ||||||||||  |||| ||||||||||| ||||      
T  22027126 ttttctccattttcattctccagttttaaaacaca-caactacttttctttataatttaacttttattttctctctgtcatgtttgatggttgtgattca 22027224  T
Q  210 acttgaaaaaa 220  Q
    |||||||||||    
T  22027225 acttgaaaaaa 22027235  T

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Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 126 - 208
Target Start/End: Complemental strand, 38499819 - 38499737
Alignment:
Q  126 aatctccaccattaaaatacaacaactacttttcattataatttaattctcattttctctctcatatttgatggttgagattt 208  Q
    ||||||||||||||| |||||| ||| | ||||| ||||||||||||| | ||||||||||| || ||| ||| |||||||||    
T  38499819 aatctccaccattaatatacaataaccatttttccttataatttaattattattttctctctaatgtttaatgattgagattt 38499737  T

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Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 134 - 222
Target Start/End: Complemental strand, 24294405 - 24294318
Alignment:
Q  134 ccattaaaatacaacaactacttttcattataatttaattctcattttctctctcatatttgatggttgagatttcacttgaaaaaatt 222  Q
    ||||| || ||||||||| ||||||| ||||||||||||| ||||||| || ||||| |||||||||| ||| ||| ||||| ||||||    
T  24294405 ccatttaagtacaacaaccacttttctttataatttaattttcatttt-tcactcatgtttgatggtttagacttcgcttgagaaaatt 24294318  T

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Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 128
Target Start/End: Original strand, 13073037 - 13073084
Alignment:
Q  81 ttggatcctctccattgaaaattttctcgagttttctccattttcaat 128  Q
    |||||| ||||||||||| ||||||||| |||||||||||||||||||    
T  13073037 ttggattctctccattgacaattttctcaagttttctccattttcaat 13073084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 213
Target Start/End: Complemental strand, 54166789 - 54166679
Alignment:
Q  102 ttttctcgagttttctccattttcaatctccaccattaaaatacaacaa-ctacttttcattataatttaattctcattttctctctcatatttgatggt 200  Q
    ||||||| | ||| ||||||||||||||||||| ||||||| | | ||| |   ||||  ||||||||||| ||| |||  ||||||||| |||||||||    
T  54166789 ttttctcaactttcctccattttcaatctccactattaaaacaaatcaatcgttttttttttataatttaactcttatt--ctctctcatgtttgatggt 54166692  T
Q  201 tgagatttcactt 213  Q
    |||||||||||||    
T  54166691 tgagatttcactt 54166679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 215
Target Start/End: Original strand, 52347512 - 52347563
Alignment:
Q  164 taatttaattctcattttctctctcatatttgatggttgagatttcacttga 215  Q
    ||||||||||||||||||||||||||| || | || |||||||| |||||||    
T  52347512 taatttaattctcattttctctctcatgttgggtgattgagattccacttga 52347563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0221 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 104 - 220
Target Start/End: Original strand, 6630 - 6746
Alignment:
Q  104 ttctcgagttttctccattttcaatctccaccattaaaatacaacaactacttttcattataatttaattctcattttctctctcatatttgatggttga 203  Q
    ||||| ||||||||||||||||||| |||| ||||||||||||||||| |  | |  | ||||||||||||||||||||||||| || |||||||||||     
T  6630 ttctcaagttttctccattttcaatatccatcattaaaatacaacaaccatgtattttaataatttaattctcattttctctcttatgtttgatggttgg 6729  T
Q  204 gatttcacttgaaaaaa 220  Q
    |||| ||||||| ||||    
T  6730 gattccacttgagaaaa 6746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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