View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13068_high_2 (Length: 383)
Name: NF13068_high_2
Description: NF13068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13068_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 1 - 369
Target Start/End: Complemental strand, 6444146 - 6443779
Alignment:
| Q |
1 |
aatttaatgccgttatttatagattttcttgaacttcttaattaatttcagtacttgtcacgnnnnnnncttcagtaattaattttattctcatttttac |
100 |
Q |
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| T |
6444146 |
aatttaatgcctttatttatagattttcttgaacttcttaattaatttcagtacttgtcacgtttttttcttcagtaattaattttattctcatttttac |
6444047 |
T |
|
| Q |
101 |
taaatttaatgtatcgctaacgcattaaacgtttctatttacaggtggagagcgcgcaagttgaaacgtcgacgtgcaattacagtgaagaagaatttca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6444046 |
taaatttaatgtatcgctaacgcattaaacgtttctatttacaggtggagagcgcgcaagttgaaacgtcgacgtgcaattacagtgaagaagaatttca |
6443947 |
T |
|
| Q |
201 |
gaggtttttgaaatttgaatttgctttggattctttaagttagttacagtttttgagttaggnnnnnnnnnnnnntaaacatgatgaaataaatgatatg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
6443946 |
gaggtttttgaaatttgaatttgctttggattctttaagttagttacagtttttgagttagg-aaaaaaaaaaaataaacatgatgaaataaatgatatg |
6443848 |
T |
|
| Q |
301 |
tttctaacagccacaattttttccgttcaaaatcttagtaactgatttgattcttctctctcatatgtg |
369 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6443847 |
tttctaacagccacaattttttccgttcaaaatcttagtaactgatttgattcttctctctcatatgtg |
6443779 |
T |
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