View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13068_high_4 (Length: 373)
Name: NF13068_high_4
Description: NF13068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13068_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 363
Target Start/End: Original strand, 37871334 - 37871696
Alignment:
| Q |
1 |
ttagtggagctaaattcagggatttatgattgaataaacaaatcatgtatagaatcatatatgttcactcagcattgtctttttctcattccacagcctg |
100 |
Q |
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| T |
37871334 |
ttagtggagctaaattcagggctttctgattgaataaacaaatcatgtatagaatcatatatgttcactcagcattgtctttttctcattccacagcctg |
37871433 |
T |
|
| Q |
101 |
ctgctaatgcacttccttctgagagagttgaacaacaagcttccaatgaaaacataaatccaatggaagtgttagaatctgagctgggaaatccacaccc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
37871434 |
ctgctaatgcacttccttctgagagagttgaacaacaagcttccaatgaaaacataaatccaatggaggtgttagaatctgagctgggaaatccacaccc |
37871533 |
T |
|
| Q |
201 |
tatgtcttccccactgaaaaagcatctgaatttgtcagtagctggagtggaaacaagtgctgtaggaaaagaaccacaagaacaaaccactccggtaagt |
300 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
37871534 |
tatgtcttccccactgaaaaagcatctgaattcgtcagtagctggagtggaaacaggtgctgtaggaaaagaaccacaagaacaaaccactctggtaagt |
37871633 |
T |
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| Q |
301 |
aaacatcaaaagaagtatgctacattggctnnnnnnntgtccaaataccgtaatggatctgtg |
363 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
37871634 |
aaacatcaaaagaagtatgctacattggctaaaaaaatgtccaaataccgtaatggatctgtg |
37871696 |
T |
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