View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13068_high_5 (Length: 348)

Name: NF13068_high_5
Description: NF13068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13068_high_5
NF13068_high_5
[»] chr7 (1 HSPs)
chr7 (2-333)||(45622093-45622424)
[»] chr8 (1 HSPs)
chr8 (1-333)||(22603614-22603945)
[»] chr1 (2 HSPs)
chr1 (1-333)||(20188421-20188734)
chr1 (282-327)||(51091743-51091788)
[»] chr3 (2 HSPs)
chr3 (2-333)||(15213972-15214284)
chr3 (2-333)||(15253191-15253503)
[»] chr6 (2 HSPs)
chr6 (202-313)||(22845740-22845850)
chr6 (73-142)||(24630537-24630606)


Alignment Details
Target: chr7 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 2 - 333
Target Start/End: Complemental strand, 45622424 - 45622093
Alignment:
Q  2 agaaaagtgaacgaaaagctaattaagaaacctgttatgagcactaactgtttaaggaaccattctttgtggatgacaaaagtcaacaacaacatttaat 101  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45622424 agaaaagtgagcgaaaagctaattaagaaacctgttatgagcactaactgtttaaggaaccattctttgtggatgacaaaagtcaacaacaacatttaat 45622325  T
Q  102 tgctcaaaagaaacaacatttctctaggaattccaatcatcggtcaccaaatcctttctgaagtgtgttgtacataaaaacccgacatgcaagcactgaa 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||| |||    
T  45622324 tgctcaaaagaaacaacatttctctaggaattccaatcatcggtcaccaaatcctttctgaagtgtgtcgtacataaaaacccgacctacaagcaccgaa 45622225  T
Q  202 gttggtgtttgtattttacctgttgcacattaccctagaaaaagaatgcgacgcgatgtccctggttccctatctcactatctaggccacgcctccccta 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  45622224 gttggtgtttgtattttacctgttgcacattaccctagaaaaagaatgcgacccgatgtccctggttccctatctcactatctaggccacgcctccccta 45622125  T
Q  302 caataatgaaggcaaaaattgaagaacaaatt 333  Q
    ||||||||||||||||||||||||||||||||    
T  45622124 caataatgaaggcaaaaattgaagaacaaatt 45622093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 22603945 - 22603614
Alignment:
Q  1 aagaaaagtgaacgaaaagctaattaagaaacctgttatgagcactaactgtttaaggaaccattctttgtggatgacaaaagtcaacaacaacatttaa 100  Q
    ||||||| |||  ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  22603945 aagaaaattgagtgaaaagctaattaagaaacctgttatgagcactaattgtttaaggaaccattcattgtggaagacaaaagtcaacaacaacatttaa 22603846  T
Q  101 ttgctcaaaagaaacaacatttctctaggaattccaatcatcggtcaccaaatcctttctgaagtgtgttgtacataaaaacccgacatgcaagcactga 200  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  22603845 ttgctcaaaagaaacaacatttctctagggattccaatcatcggtcaccaaatcctttctgaagtgtgtcgtacataaaaacccgacctgcaagcactga 22603746  T
Q  201 agttggtgtttgtattttacctgttgcacattaccctagaaaaagaatgcgacgcgatgtccctggttccctatctcactatctaggccacgcctcccct 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  22603745 agttggtgtttgtattttacctgttgcacattaccctagaaaaagaatgtgacacgatgtccctggttccctatctcactatctaggccacgcctcccct 22603646  T
Q  301 acaataatgaaggcaaaaattgaagaacaaatt 333  Q
    |||||||||||||| ||||||||||||||||||    
T  22603645 acaataatgaaggc-aaaattgaagaacaaatt 22603614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 20188734 - 20188421
Alignment:
Q  1 aagaaaagtgaacgaaaagctaattaagaaacctgttatgagcactaactgtttaaggaaccattctttgtggatgacaaaagtcaacaacaacatttaa 100  Q
    |||||||||||  |||||||||||||||||||||||||||| ||||||||||||||||            ||||  |||||||||||||||| |||||||    
T  20188734 aagaaaagtgagtgaaaagctaattaagaaacctgttatgaacactaactgtttaagg------------tggaaaacaaaagtcaacaacatcatttaa 20188647  T
Q  101 ttgctcaaaagaaacaacatttctctaggaattccaatcatcggtcaccaaatcctttctgaagtgtgttgtacataaaaacccgacatgcaagcactga 200  Q
    ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||  ||||||||||||    
T  20188646 ttgatcaaaagaaacaacatttctctaggaatttcaatcatcggtcaccaaatcctttctgaagtgtgtcgtacataaaaacccgatctgcaagcactga 20188547  T
Q  201 agttggtgtttgtattttacctgttgcacattaccctagaaaaagaatgcgacgcgatgtccctggttccctatctcactatctaggccacgcctcccct 300  Q
    |||||       ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  20188546 agttg-------tattttacctgttgcacattaccctagaaaaagaatgcagcgcgatgtccctggttccctatctcactatctaggccactcctcccct 20188454  T
Q  301 acaataatgaaggcaaaaattgaagaacaaatt 333  Q
    |||||||||||||||||||||||||||||||||    
T  20188453 acaataatgaaggcaaaaattgaagaacaaatt 20188421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 327
Target Start/End: Complemental strand, 51091788 - 51091743
Alignment:
Q  282 tctaggccacgcctcccctacaataatgaaggcaaaaattgaagaa 327  Q
    |||||| ||| ||||||| |||||||||||||||||| ||||||||    
T  51091788 tctaggtcactcctcccccacaataatgaaggcaaaatttgaagaa 51091743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 2 - 333
Target Start/End: Original strand, 15213972 - 15214284
Alignment:
Q  2 agaaaagtgaacgaaaagctaattaagaaacctgttatgagcactaactgtttaaggaaccattctttgtggatgacaaaagtcaacaacaacatttaat 101  Q
    |||||||||| | |||||||||||||||||| |||||||||||||||||||||||||            |||| ||||||||||||||||| ||||| ||    
T  15213972 agaaaagtgagcaaaaagctaattaagaaacatgttatgagcactaactgtttaagg------------tggaagacaaaagtcaacaacatcatttcat 15214059  T
Q  102 tgctcaaaagaaacaacatttctctaggaattccaatcatcggtcaccaaatcctttctgaagtgtgttgtacataaaaacccgacatgcaagcactgaa 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||| |||||||||    
T  15214060 tgctcaaaagaaacaacatttctctaggaattccaatcatcggtcaccaaatcctttctgaagtgtgtcgttcataaaaacccgacctgctagcactgaa 15214159  T
Q  202 gttggtgtttgtattttacctgttgcacattaccctagaaaaagaatgcgacgcgatgtccctggttccctatctcactatctaggccacgcctccccta 301  Q
    |       |||||||||||||||||||| ||||||||||||||||||| | | ||||||||||||||||||||||||||||| ||||||| |||||||||    
T  15214160 g-------ttgtattttacctgttgcacgttaccctagaaaaagaatgtggcacgatgtccctggttccctatctcactatccaggccactcctccccta 15214252  T
Q  302 caataatgaaggcaaaaattgaagaacaaatt 333  Q
    ||||||||||||||||||||||||||||||||    
T  15214253 caataatgaaggcaaaaattgaagaacaaatt 15214284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 2 - 333
Target Start/End: Original strand, 15253191 - 15253503
Alignment:
Q  2 agaaaagtgaacgaaaagctaattaagaaacctgttatgagcactaactgtttaaggaaccattctttgtggatgacaaaagtcaacaacaacatttaat 101  Q
    |||||||||| | |||||||||||||||||| |||||||||||||||||||||||||            |||| ||||||||||||||||| ||||| ||    
T  15253191 agaaaagtgagcaaaaagctaattaagaaacatgttatgagcactaactgtttaagg------------tggaagacaaaagtcaacaacatcatttcat 15253278  T
Q  102 tgctcaaaagaaacaacatttctctaggaattccaatcatcggtcaccaaatcctttctgaagtgtgttgtacataaaaacccgacatgcaagcactgaa 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||| |||||||||    
T  15253279 tgctcaaaagaaacaacatttctctaggaattccaatcatcggtcaccaaatcctttctgaagtgtgtcgttcataaaaacccgacctgctagcactgaa 15253378  T
Q  202 gttggtgtttgtattttacctgttgcacattaccctagaaaaagaatgcgacgcgatgtccctggttccctatctcactatctaggccacgcctccccta 301  Q
    |       |||||||||||||||||||| ||||||||||||||||||| | | ||||||||||||||||||||||||||||| ||||||| |||||||||    
T  15253379 g-------ttgtattttacctgttgcacgttaccctagaaaaagaatgtggcacgatgtccctggttccctatctcactatccaggccactcctccccta 15253471  T
Q  302 caataatgaaggcaaaaattgaagaacaaatt 333  Q
    ||||||||||||||||||||||||||||||||    
T  15253472 caataatgaaggcaaaaattgaagaacaaatt 15253503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 202 - 313
Target Start/End: Original strand, 22845740 - 22845850
Alignment:
Q  202 gttggtgtttgtattttacctgttgcacattaccctagaaaaagaatgcgacgcgatgtccctggttccctatctcactatctaggccacgcctccccta 301  Q
    ||||||||||||||||||| |||||||| ||||||||| |||| ||| ||  | |||||| || ||||||||||||||| |||||| ||| ||||||| |    
T  22845740 gttggtgtttgtattttacttgttgcaccttaccctagtaaaaaaat-cggtgtgatgtctcttgttccctatctcactgtctaggtcactcctccccga 22845838  T
Q  302 caataatgaagg 313  Q
     |||||||||||    
T  22845839 taataatgaagg 22845850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 73 - 142
Target Start/End: Complemental strand, 24630606 - 24630537
Alignment:
Q  73 gatgacaaaagtcaacaacaacatttaattgctcaaaagaaacaacatttctctaggaattccaatcatc 142  Q
    |||| |||||||||  | ||||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  24630606 gatgccaaaagtcagaaccaacattgaattgctcaaaagaaacaacatttatctaggaattccaatcatc 24630537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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