View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13068_low_1 (Length: 716)

Name: NF13068_low_1
Description: NF13068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13068_low_1
NF13068_low_1
[»] chr7 (8 HSPs)
chr7 (341-707)||(14756667-14757033)
chr7 (19-311)||(14756345-14756637)
chr7 (367-707)||(14709113-14709466)
chr7 (406-647)||(14749528-14749782)
chr7 (149-311)||(14709505-14709668)
chr7 (406-580)||(14764577-14764751)
chr7 (164-264)||(14721685-14721786)
chr7 (75-152)||(14710317-14710394)
[»] chr5 (9 HSPs)
chr5 (367-707)||(17571516-17571869)
chr5 (75-292)||(17581654-17581871)
chr5 (149-311)||(17571908-17572070)
chr5 (406-580)||(17563848-17564022)
chr5 (164-264)||(17602405-17602506)
chr5 (75-152)||(17572720-17572797)
chr5 (26-74)||(17580226-17580274)
chr5 (75-142)||(17619915-17619982)
chr5 (406-499)||(17621590-17621682)
[»] chr1 (2 HSPs)
chr1 (406-577)||(15195023-15195194)
chr1 (406-577)||(15215441-15215612)
[»] chr8 (1 HSPs)
chr8 (406-580)||(24394997-24395171)
[»] chr6 (2 HSPs)
chr6 (76-142)||(12613434-12613500)
chr6 (152-248)||(12614179-12614275)


Alignment Details
Target: chr7 (Bit Score: 363; Significance: 0; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 341 - 707
Target Start/End: Original strand, 14756667 - 14757033
Alignment:
Q  341 ggtattattacctctccagttccagtaagtaaagtgaaagaaggatcttggtaatctaggatcggaatacatctcaaacatgtctttttcttgcaggtat 440  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14756667 ggtattattacctctccagttccagtaagtaaagtgaaagaaggatcttggtaatctaggatcggaatacatctcaaacatgtctttttcttgcaggtat 14756766  T
Q  441 cggaatagtctcatcaccttttcaagagtaatctctagatcatcctcgctaactccctttagttactttctaagcttatcgtctacaaatagtgaaatgt 540  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14756767 cggaatagtctcatcaccttttcaagagtaatctctagatcatcctcgctaactccctttagttactttctaagcttatcgtctacaaatagtgaaatgt 14756866  T
Q  541 actctggagtacaagggttcaagttaatgaaaaattcaaagcattttggaacaaattgttatttctaaatttcaagtttataattttctcgtattcatat 640  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14756867 actctggagtacaagggttcaagttaatgaaaaattcaaagcattttggaacaaattgttatttctaaatttcaagtttataattttctcgtattcatat 14756966  T
Q  641 ttctcattaacaccagaaatcgtcccagttacaaaatggaattatgacctaacacattgatattctt 707  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  14756967 ttctcattaacaccagaaatcgtcccagttacaaaatggaattatgacctaacacattgattttctt 14757033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 19 - 311
Target Start/End: Original strand, 14756345 - 14756637
Alignment:
Q  19 gttcgtctgattttctccatgatagaatcaaaagaagaggaaaaaaggtagtactacttaaatggcttaaatccaagaaatagaattctgttctctatgt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14756345 gttcgtctgattttctccatgatagaatcaaaagaagaggaaaaaaggtagtactacttaaatggcttaaatccaagaaatagaattctgttctctatgt 14756444  T
Q  119 aagttttggcagctagaacaagtttacaacatcttggaactctggagggtgtgtttttgtttacaatcaaggagttgacttgttgcaaaatgaaatgact 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14756445 aagttttggcagctagaacaagtttacaacatcttggaactctggagggtgtgtttttgtttacaatcaaggagttgacttgttgcaaaatgaaatgact 14756544  T
Q  219 tcaagtttattcgattcggtatttgatgtctaaaaaccatgtaaacttaatgatgttatgttgtactgtcttcattcattttgaaaacagata 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  14756545 tcaagtttattcgattcggtatttgatgtctaaaaaccatgtaaacttaatgatgttatgttgtactgtcttcattcattttcaaaacagata 14756637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 367 - 707
Target Start/End: Complemental strand, 14709466 - 14709113
Alignment:
Q  367 aagtaaagtgaaagaaggatcttggtaatctaggatcggaatacatctcaaacatgtctttttcttgcaggtatcggaatagtctcatcaccttttcaag 466  Q
    ||||||||||||||||||||||| |||||||||||| ||||| | |||||||||||||||||||||||| ||||||||||||  || |||||||||||||    
T  14709466 aagtaaagtgaaagaaggatcttagtaatctaggattggaattcttctcaaacatgtctttttcttgcaagtatcggaatagcgtcgtcaccttttcaag 14709367  T
Q  467 agtaatctctagatcatcctcgctaactccctttagttactttctaagcttatcgtctacaaatagtgaaatgtactctggagtacaagggttcaagtta 566  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  14709366 agtaatctctagatcatcttcgctaactccctttagttcctttctaagcttatcgtctacaaatagtgaaatgtactctggagaacaagggtttaagtta 14709267  T
Q  567 atgaaaa-------------attcaaagcattttggaacaaattgttatttctaaatttcaagtttataattttctcgtattcatatttctcattaacac 653  Q
    |||||||             |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  14709266 atgaaaaattcgaacgaggaattcaaagcattttggaacaaattgttatttctaaattccaagtttataattttctcgtattcatatttctcattaacac 14709167  T
Q  654 cagaaatcgtcccagttacaaaatggaattatgacctaacacattgatattctt 707  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||| |||||    
T  14709166 cagaaatcgtcctagttacaaaatggaactatgacctaacacattgattttctt 14709113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 406 - 647
Target Start/End: Original strand, 14749528 - 14749782
Alignment:
Q  406 aatacatctcaaacatgtctttttcttgcaggtatcggaatagtctcatcaccttttcaagagtaatctctagatcatcctcgctaactccctttagtta 505  Q
    ||||| ||||||||| ||||||||||||||||||||||||||   ||||||||||||||||||||| ||||| |||||||||||||||||| |||||       
T  14749528 aatacttctcaaacacgtctttttcttgcaggtatcggaataacatcatcaccttttcaagagtaacctctaaatcatcctcgctaactccatttagacc 14749627  T
Q  506 ctttctaagcttatcgtctacaaatagtgaaatgtactctggagtacaagggttcaagttaatgaaaaattcaaagca-------------ttttggaac 592  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||             |||||||||    
T  14749628 ctttctaagcttatcgtctacaaatagtgaaatgtactctggagaacaagggttcaagttaatgaaaaattcaaaccaggaattcaaaacattttggaac 14749727  T
Q  593 aaattgttatttctaaatttcaagtttataattttctcgtattcatatttctcat 647  Q
    | |||||| || ||||||| |||||||||||| || ||||||| || ||||||||    
T  14749728 atattgttgttactaaattccaagtttataatcttgtcgtatttatctttctcat 14749782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 149 - 311
Target Start/End: Complemental strand, 14709668 - 14709505
Alignment:
Q  149 atcttggaactctggagggtgtgtttttgtttacaatcaaggagttgacttgttgcaaaatgaaatgacttc-aagtttattcgattcggtatttgatgt 247  Q
    ||||| ||||| ||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||    
T  14709668 atcttcgaactttggagggtgggttttggtttacactcaaggagttgacttgttgcaaaatgaaatgacttccaagtttatttgattcgggatttgatgt 14709569  T
Q  248 ctaaaaaccatgtaaacttaatgatgttatgttgtactgtcttcattcattttgaaaacagata 311  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  14709568 ctaaaaaccatgtaaacttaatgatgttatgttgtactttcttcattcattttgaaaaaagata 14709505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 406 - 580
Target Start/End: Original strand, 14764577 - 14764751
Alignment:
Q  406 aatacatctcaaacatgtctttttcttgcaggtatcggaatagtctcatcaccttttcaagagtaatctctagatcatcctcgctaactccctttagtta 505  Q
    ||||| |||||||||  |||||||| ||||  || ||||||||   ||| ||||| |||||  |||| |||| | ||||||| ||||||||||||||       
T  14764577 aatacttctcaaacacatctttttcctgcaaataccggaatagaaccataaccttgtcaaggttaatttctacaacatcctcactaactccctttagacc 14764676  T
Q  506 ctttctaagcttatcgtctacaaatagtgaaatgtactctggagtacaagggttcaagttaatgaaaaattcaaa 580  Q
     |||| |||||||||||||||||| |||||||||||||||||| ||| ||| |||||||| ||||||||||||||    
T  14764677 ttttcgaagcttatcgtctacaaagagtgaaatgtactctggaatacgaggattcaagttcatgaaaaattcaaa 14764751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 164 - 264
Target Start/End: Complemental strand, 14721786 - 14721685
Alignment:
Q  164 agggtgtgtttttgtttacaatcaaggagttgacttgttgcaaaatgaaat-gacttcaagtttattcgattcggtatttgatgtctaaaaaccatgtaa 262  Q
    ||||||| |||||| |||||||||||||||| |||||||||||| |||||| ||||||| |||||||||||| || || |||||||||||||||||||||    
T  14721786 agggtgtatttttgcttacaatcaaggagttaacttgttgcaaattgaaattgacttcaggtttattcgatttgggatctgatgtctaaaaaccatgtaa 14721687  T
Q  263 ac 264  Q
    ||    
T  14721686 ac 14721685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 75 - 152
Target Start/End: Complemental strand, 14710394 - 14710317
Alignment:
Q  75 cttaaatggcttaaatccaagaaatagaattctgttctctatgtaagttttggcagctagaacaagtttacaacatct 152  Q
    |||||||||||||| || |||||| ||||||||||||||||| |||||||||||||||  ||||||||  ||||||||    
T  14710394 cttaaatggcttaactctaagaaagagaattctgttctctatctaagttttggcagcttaaacaagttcccaacatct 14710317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 367 - 707
Target Start/End: Complemental strand, 17571869 - 17571516
Alignment:
Q  367 aagtaaagtgaaagaaggatcttggtaatctaggatcggaatacatctcaaacatgtctttttcttgcaggtatcggaatagtctcatcaccttttcaag 466  Q
    ||||||||||||||||||||||| |||||||||||| ||||| | |||||||||||||||||||||||| ||||||||||||  || |||| ||||||||    
T  17571869 aagtaaagtgaaagaaggatcttagtaatctaggattggaattcttctcaaacatgtctttttcttgcaagtatcggaatagcgtcgtcacattttcaag 17571770  T
Q  467 agtaatctctagatcatcctcgctaactccctttagttactttctaagcttatcgtctacaaatagtgaaatgtactctggagtacaagggttcaagtta 566  Q
    ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  17571769 agtaatctctacatcatcctcgctaactccctttagttcctttctaagcttatcgtctacaaatagtgaaatgtactctggagaacaagggttcaagtta 17571670  T
Q  567 atgaaaa-------------attcaaagcattttggaacaaattgttatttctaaatttcaagtttataattttctcgtattcatatttctcattaacac 653  Q
    |||||||             |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  17571669 atgaaaaattcgaacgaggaattcaaagcattttggaagaaattgttatttctaaattccaagtttataattttctcgtattcatatttctcattaacac 17571570  T
Q  654 cagaaatcgtcccagttacaaaatggaattatgacctaacacattgatattctt 707  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||| |||||    
T  17571569 cagaaatcgtcctagttacaaaatggaactatgacctaacacattgattttctt 17571516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 75 - 292
Target Start/End: Complemental strand, 17581871 - 17581654
Alignment:
Q  75 cttaaatggcttaaatccaagaaatagaattctgttctctatgtaagttttggcagctagaacaagtttacaacatcttggaactctggagggtgtgttt 174  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||| ||||||||||||||| ||||||||||||||    
T  17581871 cttaaatggcttaaatccaagaaatagaattttgttctctatgtaagttttggcagcttaaacaagtttccaacatcttggaactttggagggtgtgttt 17581772  T
Q  175 ttgtttacaatcaaggagttgacttgttgcaaaatgaaatgacttcaagtttattcgattcggtatttgatgtctaaaaaccatgtaaacttaatgatgt 274  Q
    ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| ||||||||||    
T  17581771 ttgtttacactcaaggagttgagttgttgcaaaatgaaatgacttcaagtttattcgattcgggttttgatgtctaaaaaccatgtaaatttaatgatgt 17581672  T
Q  275 tatgttgtactgtcttca 292  Q
    ||||||||| ||||||||    
T  17581671 tatgttgtattgtcttca 17581654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 149 - 311
Target Start/End: Complemental strand, 17572070 - 17571908
Alignment:
Q  149 atcttggaactctggagggtgtgtttttgtttacaatcaaggagttgacttgttgcaaaatgaaatgacttcaagtttattcgattcggtatttgatgtc 248  Q
    ||||||||||| ||||||||| ||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||    
T  17572070 atcttggaactttggagggtgggttttggtttacactcaaggagtcgacttgttgcaaaatgaaatgacttcaagtttattcgattcgggatttgatatc 17571971  T
Q  249 taaaaaccatgtaaacttaatgatgttatgttgtactgtcttcattcattttgaaaacagata 311  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  17571970 taaaaaccatgtaaacttaatgatgttatgttgtactttcttcattcattttgaaaaaagata 17571908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 406 - 580
Target Start/End: Complemental strand, 17564022 - 17563848
Alignment:
Q  406 aatacatctcaaacatgtctttttcttgcaggtatcggaatagtctcatcaccttttcaagagtaatctctagatcatcctcgctaactccctttagtta 505  Q
    ||||| |||||||||  |||||||| ||||  || ||||||||   ||| ||||| |||||  ||||||||| | ||||||| ||||||||||||||       
T  17564022 aatacttctcaaacacatctttttcctgcaaataccggaatagaaccataaccttgtcaaggataatctctacaacatcctcactaactccctttagacc 17563923  T
Q  506 ctttctaagcttatcgtctacaaatagtgaaatgtactctggagtacaagggttcaagttaatgaaaaattcaaa 580  Q
     |||| |||||||||||||||||| |||||||||||||||||| ||| ||| |||||||| ||||||||||||||    
T  17563922 ttttcgaagcttatcgtctacaaagagtgaaatgtactctggaatacgaggattcaagttcatgaaaaattcaaa 17563848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 164 - 264
Target Start/End: Original strand, 17602405 - 17602506
Alignment:
Q  164 agggtgtgtttttgtttacaatcaaggagttgacttgttgcaaaatgaaat-gacttcaagtttattcgattcggtatttgatgtctaaaaaccatgtaa 262  Q
    ||||||| |||||| |||||||||||||||| |||||||||||| |||||| ||||||| |||||||||||| || ||||||||||||||||||||||||    
T  17602405 agggtgtatttttgcttacaatcaaggagttaacttgttgcaaattgaaattgacttcaggtttattcgatttgggatttgatgtctaaaaaccatgtaa 17602504  T
Q  263 ac 264  Q
    ||    
T  17602505 ac 17602506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 75 - 152
Target Start/End: Complemental strand, 17572797 - 17572720
Alignment:
Q  75 cttaaatggcttaaatccaagaaatagaattctgttctctatgtaagttttggcagctagaacaagtttacaacatct 152  Q
    ||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||  ||||||||  ||||||||    
T  17572797 cttaaatggctaaactccaagaaagagaattctgttctctatgtaagttttggcagcttaaacaagttcccaacatct 17572720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 26 - 74
Target Start/End: Complemental strand, 17580274 - 17580226
Alignment:
Q  26 tgattttctccatgatagaatcaaaagaagaggaaaaaaggtagtacta 74  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  17580274 tgattttctccatgatataatcaaaagaagagaaaaaaaggtagtacta 17580226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 75 - 142
Target Start/End: Original strand, 17619915 - 17619982
Alignment:
Q  75 cttaaatggcttaaatccaagaaatagaattctgttctctatgtaagttttggcagctagaacaagtt 142  Q
    |||||||||||  | ||||||||| ||||||||||| |||||||||||||||||||||  ||||||||    
T  17619915 cttaaatggctgcactccaagaaagagaattctgttatctatgtaagttttggcagcttaaacaagtt 17619982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 406 - 499
Target Start/End: Original strand, 17621590 - 17621682
Alignment:
Q  406 aatacatctcaaacatgtctttttcttgcaggtatcggaatagtctcatcaccttttcaagagtaatctctagatcatcctcgctaactccctt 499  Q
    ||||| ||||||||| ||||||| |||||| |||| |||||||  |||||||||| |||||||||||| | | ||||||||||| ||| |||||    
T  17621590 aatacttctcaaacaagtctttt-cttgcaagtattggaatagcatcatcaccttgtcaagagtaatcaccaaatcatcctcgcaaaccccctt 17621682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 406 - 577
Target Start/End: Original strand, 15195023 - 15195194
Alignment:
Q  406 aatacatctcaaacatgtctttttcttgcaggtatcggaatagtctcatcaccttttcaagagtaatctctagatcatcctcgctaactccctttagtta 505  Q
    ||||| |||||||||  |||||||| ||||  || |||||||    ||| ||||| | |||||||||||||| | ||||||| |||| |||||||||       
T  15195023 aatacttctcaaacacatctttttcctgcaaataacggaataaaaacataaccttgttaagagtaatctctacaacatcctcactaattccctttagacc 15195122  T
Q  506 ctttctaagcttatcgtctacaaatagtgaaatgtactctggagtacaagggttcaagttaatgaaaaattc 577  Q
     |||  ||||||||||| || ||||||||||||||||||||||| || ||| ||||||||||||| ||||||    
T  15195123 attttgaagcttatcgtttaaaaatagtgaaatgtactctggagaacgaggattcaagttaatgataaattc 15195194  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 406 - 577
Target Start/End: Original strand, 15215441 - 15215612
Alignment:
Q  406 aatacatctcaaacatgtctttttcttgcaggtatcggaatagtctcatcaccttttcaagagtaatctctagatcatcctcgctaactccctttagtta 505  Q
    ||||| |||||||||  |||||||| ||||  || |||||||    ||| ||||| | |||||||||||||| | ||||||| |||| |||||||||       
T  15215441 aatacttctcaaacacatctttttcctgcaaataacggaataaaaacataaccttgttaagagtaatctctacaacatcctcactaattccctttagacc 15215540  T
Q  506 ctttctaagcttatcgtctacaaatagtgaaatgtactctggagtacaagggttcaagttaatgaaaaattc 577  Q
     |||  ||||||||||| || ||||||||||||||||||||||| || ||| ||||||||||||| ||||||    
T  15215541 attttgaagcttatcgtttaaaaatagtgaaatgtactctggagaacgaggattcaagttaatgataaattc 15215612  T

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Target: chr8 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 406 - 580
Target Start/End: Original strand, 24394997 - 24395171
Alignment:
Q  406 aatacatctcaaacatgtctttttcttgcaggtatcggaatagtctcatcaccttttcaagagtaatctctagatcatcctcgctaactccctttagtta 505  Q
    ||||| ||||||| |  ||||||||||||| ||||||||| ||  |||||||||| || |||||||  |||| ||| |||||| | || || || ||       
T  24394997 aatacttctcaaaaacatctttttcttgcaagtatcggaacagcatcatcaccttgtccagagtaacttctacatcgtcctcgttgacccctttcagacc 24395096  T
Q  506 ctttctaagcttatcgtctacaaatagtgaaatgtactctggagtacaagggttcaagttaatgaaaaattcaaa 580  Q
    ||| | ||| ||||| |||||||||||||||||| ||||||||| ||  || ||||||||||||||| |||||||    
T  24395097 cttacgaagtttatcatctacaaatagtgaaatgaactctggagaacggggattcaagttaatgaaatattcaaa 24395171  T

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Target: chr6 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 76 - 142
Target Start/End: Original strand, 12613434 - 12613500
Alignment:
Q  76 ttaaatggcttaaatccaagaaatagaattctgttctctatgtaagttttggcagctagaacaagtt 142  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||  |||||||||    
T  12613434 ttaaatggcttaattccaagaaagagaattctgttctctatgtaagttttggtagcatgaacaagtt 12613500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 152 - 248
Target Start/End: Original strand, 12614179 - 12614275
Alignment:
Q  152 ttggaactctggagggtgtgtttttgtttacaatcaaggagttgacttgttgcaaaatgaaatgacttcaagtttattcgattcggtatttgatgtc 248  Q
    |||||||| |||||  ||| ||||| ||| |||| |||  |||||||||||||||||| |||||| |||||||||  | |||| || ||||||||||    
T  12614179 ttggaactttggagtttgtatttttattttcaatgaagaggttgacttgttgcaaaatcaaatgaattcaagttttcttgatttggaatttgatgtc 12614275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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