View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13068_low_3 (Length: 373)
Name: NF13068_low_3
Description: NF13068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13068_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 2899843 - 2899489
Alignment:
| Q |
1 |
gatgtctgcacaagaactgttcattttgtaactcttcctaggatggattgtttccttctggacagtttcaatctccaaagcgtccaactcttgatccaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2899843 |
gatgtctgcacaagaactgttcattttgtaactcttcctaggatggattgtttccttctggacagtttcaatctccaaagcgtccaactcttgatccaat |
2899744 |
T |
|
| Q |
101 |
acctgacaaagatccatgacaacactctcatggatcttctgccacaagtgagctctgaatatctgaataagagatatcttcaaagttggaattttcccat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2899743 |
acctgacaaagatccatgacaacactctcatggatcttctgccacaagtgagctctgaatatctgaataagagatatcttcaaagttggaattttcccat |
2899644 |
T |
|
| Q |
201 |
gcatgaaaataccagtcagatctagctgcacctggaaaccaacataaacattggctcggttaatggttggtgaccaccaaagcgtaaatctacggttggg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2899643 |
gcatgaaaataccagtcagatctagctgcacctggaaaccaacataaacattggctcggttaatggttggtgaccaccaaagcgtaaatctacggttggg |
2899544 |
T |
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| Q |
301 |
tatctggttgagaccagatctttgtgcattggtgagcttcttatacttcatagat |
355 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2899543 |
tatctggttgagaccagatctttgtgcattggtgagcttcttatacttcatagat |
2899489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 44778146 - 44778500
Alignment:
| Q |
1 |
gatgtctgcacaagaactgttcattttgtaactcttcctaggatggattgtttccttctggacagtttcaatctccaaagcgtccaactcttgatccaat |
100 |
Q |
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|||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
44778146 |
gatgtcggcacaagaactgttcattttgtaacttttcctaggatggattgtttccttctggacagtctcaatctccaaagcgtccaactcttgatccaaa |
44778245 |
T |
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| Q |
101 |
acctgacaaagatccatgacaacactctcatggatcttctgccacaagtgagctctgaatatctgaataagagatatcttcaaagttggaattttcccat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
44778246 |
acctgacaaagatccatgacaacactctcatggatcttctgccacaagtgagctctgaatatctggataagagatatcttcaaagttggaattttcccat |
44778345 |
T |
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| Q |
201 |
gcatgaaaataccagtcagatctagctgcacctggaaaccaacataaacattggctcggttaatggttggtgaccaccaaagcgtaaatctacggttggg |
300 |
Q |
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|||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
44778346 |
gcatgaaaataccagtcagatcaagttgcacttggaaaccaacataaacattggctcggttaatggttggtgaccaccacagtgtaaatctacggttggg |
44778445 |
T |
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| Q |
301 |
tatctggttgagaccagatctttgtgcattggtgagcttcttatacttcatagat |
355 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
44778446 |
tatctggttgagaccagatctctgtgcattggtgagcttcttatacttcatagat |
44778500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 39875000 - 39875352
Alignment:
| Q |
1 |
gatgtctgcacaagaactgttcattttgtaactcttcctaggatggattgtttccttctggacagtttcaatctccaaagcgtccaactcttgatccaat |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
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| T |
39875000 |
gatgtccgcacaagaactgttcattttgtaactcttcctaggatggattgtttccttctgaacagtctcaatctccaaagcgtccaactcttgatccaaa |
39875099 |
T |
|
| Q |
101 |
acctgacaaagatccatgacaacactctcatggatcttctgccacaagtgagctctgaatatctgaataagagatatcttcaaagttggaattttcccat |
200 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
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| T |
39875100 |
acctgacaaagatccatgacaacactc--atggatcttctgccacaagtgagctctgaatatctggatcagagatatcttcaaagttggaattttcccat |
39875197 |
T |
|
| Q |
201 |
gcatgaaaataccagtcagatctagctgcacctggaaaccaacataaacattggctcggttaatggttggtgaccaccaaagcgtaaatctacggttggg |
300 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
39875198 |
gcatgaaaataccagtcagatctagctgcacttggaaaccaacataaacattggctcggttaatggttggtgaccaccacagtgtaaatctacggttggg |
39875297 |
T |
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| Q |
301 |
tatctggttgagaccagatctttgtgcattggtgagcttcttatacttcatagat |
355 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
39875298 |
tatctggttgagaccagatctctgtgcattggtgagcttcttatacttcatagat |
39875352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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