View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13068_low_6 (Length: 317)
Name: NF13068_low_6
Description: NF13068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13068_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 19 - 307
Target Start/End: Complemental strand, 190676 - 190384
Alignment:
| Q |
19 |
tgaagtggatatgaaaatcccaccaactttcattttcaaatttatttattgatttgtaaatctaaatattttagtgacatagaagaggaaaagtaaacct |
118 |
Q |
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| T |
190676 |
tgaagtggatatggaaatcccaccaactttcattttcaaatttatttattgatttgtaaatctaaatattttagtgacatagaagaggaaaagtaaacct |
190577 |
T |
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| Q |
119 |
tttcctccccttc----aatggaacttaaccaatatatacaataactgataattttattagagagagaaatatggttgaaaatttgaatgctcgactaca |
214 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
190576 |
tttcctccccttccttcaatggaacttaaccaatatatacaataactgataattttattagagagagaaatatggttgaaaatttgaatgctcgactaca |
190477 |
T |
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| Q |
215 |
tgttagtttatttatttataataaggaattggttgcatgtagttttgaggaaggggaaccattaattaattggttcatcattgtgagcctatg |
307 |
Q |
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| T |
190476 |
tgttagtttatttatttataataaggaattggttgcatgtagttttgaggaaggggaaccattaattaattggttcatcattgtgagcctatg |
190384 |
T |
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