View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13068_low_7 (Length: 281)

Name: NF13068_low_7
Description: NF13068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13068_low_7
NF13068_low_7
[»] chr7 (4 HSPs)
chr7 (19-274)||(14756345-14756600)
chr7 (149-274)||(14709542-14709668)
chr7 (164-264)||(14721685-14721786)
chr7 (75-152)||(14710317-14710394)
[»] chr5 (6 HSPs)
chr5 (75-274)||(17581672-17581871)
chr5 (149-274)||(17571945-17572070)
chr5 (164-264)||(17602405-17602506)
chr5 (75-152)||(17572720-17572797)
chr5 (26-74)||(17580226-17580274)
chr5 (75-142)||(17619915-17619982)
[»] chr6 (2 HSPs)
chr6 (76-142)||(12613434-12613500)
chr6 (152-248)||(12614179-12614275)


Alignment Details
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 19 - 274
Target Start/End: Original strand, 14756345 - 14756600
Alignment:
Q  19 gttcgtctgattttctccatgatagaatcaaaagaagaggaaaaaaggtagtactacttaaatggcttaaatccaagaaatagaattctgttctctatgt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14756345 gttcgtctgattttctccatgatagaatcaaaagaagaggaaaaaaggtagtactacttaaatggcttaaatccaagaaatagaattctgttctctatgt 14756444  T
Q  119 aagttttggcagctagaacaagtttacaacatcttggaactctggagggtgtgtttttgtttacaatcaaggagttgacttgttgcaaaatgaaatgact 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14756445 aagttttggcagctagaacaagtttacaacatcttggaactctggagggtgtgtttttgtttacaatcaaggagttgacttgttgcaaaatgaaatgact 14756544  T
Q  219 tcaagtttattcgattcggtatttgatgtctaaaaaccatgtaaacttgatgatgt 274  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  14756545 tcaagtttattcgattcggtatttgatgtctaaaaaccatgtaaacttaatgatgt 14756600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 149 - 274
Target Start/End: Complemental strand, 14709668 - 14709542
Alignment:
Q  149 atcttggaactctggagggtgtgtttttgtttacaatcaaggagttgacttgttgcaaaatgaaatgactt-caagtttattcgattcggtatttgatgt 247  Q
    ||||| ||||| ||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||    
T  14709668 atcttcgaactttggagggtgggttttggtttacactcaaggagttgacttgttgcaaaatgaaatgacttccaagtttatttgattcgggatttgatgt 14709569  T
Q  248 ctaaaaaccatgtaaacttgatgatgt 274  Q
    ||||||||||||||||||| |||||||    
T  14709568 ctaaaaaccatgtaaacttaatgatgt 14709542  T

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Target: chr7; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 164 - 264
Target Start/End: Complemental strand, 14721786 - 14721685
Alignment:
Q  164 agggtgtgtttttgtttacaatcaaggagttgacttgttgcaaaatgaaat-gacttcaagtttattcgattcggtatttgatgtctaaaaaccatgtaa 262  Q
    ||||||| |||||| |||||||||||||||| |||||||||||| |||||| ||||||| |||||||||||| || || |||||||||||||||||||||    
T  14721786 agggtgtatttttgcttacaatcaaggagttaacttgttgcaaattgaaattgacttcaggtttattcgatttgggatctgatgtctaaaaaccatgtaa 14721687  T
Q  263 ac 264  Q
    ||    
T  14721686 ac 14721685  T

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Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 75 - 152
Target Start/End: Complemental strand, 14710394 - 14710317
Alignment:
Q  75 cttaaatggcttaaatccaagaaatagaattctgttctctatgtaagttttggcagctagaacaagtttacaacatct 152  Q
    |||||||||||||| || |||||| ||||||||||||||||| |||||||||||||||  ||||||||  ||||||||    
T  14710394 cttaaatggcttaactctaagaaagagaattctgttctctatctaagttttggcagcttaaacaagttcccaacatct 14710317  T

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Target: chr5 (Bit Score: 156; Significance: 6e-83; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 75 - 274
Target Start/End: Complemental strand, 17581871 - 17581672
Alignment:
Q  75 cttaaatggcttaaatccaagaaatagaattctgttctctatgtaagttttggcagctagaacaagtttacaacatcttggaactctggagggtgtgttt 174  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||| ||||||||||||||| ||||||||||||||    
T  17581871 cttaaatggcttaaatccaagaaatagaattttgttctctatgtaagttttggcagcttaaacaagtttccaacatcttggaactttggagggtgtgttt 17581772  T
Q  175 ttgtttacaatcaaggagttgacttgttgcaaaatgaaatgacttcaagtttattcgattcggtatttgatgtctaaaaaccatgtaaacttgatgatgt 274  Q
    ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| || |||||||    
T  17581771 ttgtttacactcaaggagttgagttgttgcaaaatgaaatgacttcaagtttattcgattcgggttttgatgtctaaaaaccatgtaaatttaatgatgt 17581672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 149 - 274
Target Start/End: Complemental strand, 17572070 - 17571945
Alignment:
Q  149 atcttggaactctggagggtgtgtttttgtttacaatcaaggagttgacttgttgcaaaatgaaatgacttcaagtttattcgattcggtatttgatgtc 248  Q
    ||||||||||| ||||||||| ||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||    
T  17572070 atcttggaactttggagggtgggttttggtttacactcaaggagtcgacttgttgcaaaatgaaatgacttcaagtttattcgattcgggatttgatatc 17571971  T
Q  249 taaaaaccatgtaaacttgatgatgt 274  Q
    |||||||||||||||||| |||||||    
T  17571970 taaaaaccatgtaaacttaatgatgt 17571945  T

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Target: chr5; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 164 - 264
Target Start/End: Original strand, 17602405 - 17602506
Alignment:
Q  164 agggtgtgtttttgtttacaatcaaggagttgacttgttgcaaaatgaaat-gacttcaagtttattcgattcggtatttgatgtctaaaaaccatgtaa 262  Q
    ||||||| |||||| |||||||||||||||| |||||||||||| |||||| ||||||| |||||||||||| || ||||||||||||||||||||||||    
T  17602405 agggtgtatttttgcttacaatcaaggagttaacttgttgcaaattgaaattgacttcaggtttattcgatttgggatttgatgtctaaaaaccatgtaa 17602504  T
Q  263 ac 264  Q
    ||    
T  17602505 ac 17602506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 75 - 152
Target Start/End: Complemental strand, 17572797 - 17572720
Alignment:
Q  75 cttaaatggcttaaatccaagaaatagaattctgttctctatgtaagttttggcagctagaacaagtttacaacatct 152  Q
    ||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||  ||||||||  ||||||||    
T  17572797 cttaaatggctaaactccaagaaagagaattctgttctctatgtaagttttggcagcttaaacaagttcccaacatct 17572720  T

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Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 74
Target Start/End: Complemental strand, 17580274 - 17580226
Alignment:
Q  26 tgattttctccatgatagaatcaaaagaagaggaaaaaaggtagtacta 74  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  17580274 tgattttctccatgatataatcaaaagaagagaaaaaaaggtagtacta 17580226  T

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Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 75 - 142
Target Start/End: Original strand, 17619915 - 17619982
Alignment:
Q  75 cttaaatggcttaaatccaagaaatagaattctgttctctatgtaagttttggcagctagaacaagtt 142  Q
    |||||||||||  | ||||||||| ||||||||||| |||||||||||||||||||||  ||||||||    
T  17619915 cttaaatggctgcactccaagaaagagaattctgttatctatgtaagttttggcagcttaaacaagtt 17619982  T

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Target: chr6 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 76 - 142
Target Start/End: Original strand, 12613434 - 12613500
Alignment:
Q  76 ttaaatggcttaaatccaagaaatagaattctgttctctatgtaagttttggcagctagaacaagtt 142  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||  |||||||||    
T  12613434 ttaaatggcttaattccaagaaagagaattctgttctctatgtaagttttggtagcatgaacaagtt 12613500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 248
Target Start/End: Original strand, 12614179 - 12614275
Alignment:
Q  152 ttggaactctggagggtgtgtttttgtttacaatcaaggagttgacttgttgcaaaatgaaatgacttcaagtttattcgattcggtatttgatgtc 248  Q
    |||||||| |||||  ||| ||||| ||| |||| |||  |||||||||||||||||| |||||| |||||||||  | |||| || ||||||||||    
T  12614179 ttggaactttggagtttgtatttttattttcaatgaagaggttgacttgttgcaaaatcaaatgaattcaagttttcttgatttggaatttgatgtc 12614275  T

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