View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13068_low_9 (Length: 238)
Name: NF13068_low_9
Description: NF13068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13068_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 8 - 113
Target Start/End: Complemental strand, 19909330 - 19909225
Alignment:
| Q |
8 |
tccactaaaaccaaaatatcatttgaggagcaacctcaacaaagaatcataaaaggaagtaacgaggataccttataaattttaagaagttttaatctca |
107 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19909330 |
tccactaaaaccaaaatatcatttgatgagcaacctcaacaaagaatcataacaggaagtaacgaggataccttataaattttaagaagttttaatctca |
19909231 |
T |
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| Q |
108 |
tgcatt |
113 |
Q |
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|||||| |
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| T |
19909230 |
tgcatt |
19909225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 119 - 204
Target Start/End: Complemental strand, 19909189 - 19909104
Alignment:
| Q |
119 |
gtcatagatgtaagccaacaattgaaaagctaattaattgaagaatgaatgtgagacacacatctaccactacgttataaaacttt |
204 |
Q |
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| T |
19909189 |
gtcatagatataagccaacaattgaaaagctaattaattgaagaatgaatgtgagtcacacatctaccactacgttataaaacttt |
19909104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 4 - 114
Target Start/End: Original strand, 54681294 - 54681403
Alignment:
| Q |
4 |
atcatccactaaaaccaaaatatcatttgaggagcaacctcaacaaagaatcataaaaggaagtaacgaggataccttataaattttaagaagttttaat |
103 |
Q |
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|||||||||||||| |||| |||||||||| ||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
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| T |
54681294 |
atcatccactaaaatcaaa-tatcatttgatgagcaacctcagcaaagaatcataaaaggaagtaacaagaataccttataaattttaagaagttttaat |
54681392 |
T |
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| Q |
104 |
ctcatgcattt |
114 |
Q |
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||||||||||| |
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| T |
54681393 |
ctcatgcattt |
54681403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 115 - 209
Target Start/End: Original strand, 54681464 - 54681557
Alignment:
| Q |
115 |
ttaggtcatagatgtaagccaacaattgaaaagctaattaattgaagaatgaatgtgagacacacatctaccactacgttataaaacttttaaga |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
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| T |
54681464 |
ttaggtcatagatgtaagccaacaattgaaaagctaattaattgaagaatgaatgtgagtcacacatctaccactacgttataaaa-ttttaaga |
54681557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 4 - 92
Target Start/End: Complemental strand, 26992874 - 26992787
Alignment:
| Q |
4 |
atcatccactaaaaccaaaatatcatttgaggagcaacctcaacaaagaatcataaaaggaagtaacgaggataccttataaattttaa |
92 |
Q |
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||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
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| T |
26992874 |
atcatccactaaaaccaaa-tatcatttgatgagcaacctcaacaaagaatcataaaaggaagtaaccagaataccttataaattttaa |
26992787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 52310756 - 52310801
Alignment:
| Q |
21 |
aaatatcatttgaggagcaacctcaacaaagaatcataaaaggaag |
66 |
Q |
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||||||||||||| ||||||||||||||||| ||||||||| |||| |
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| T |
52310756 |
aaatatcatttgatgagcaacctcaacaaagcatcataaaaagaag |
52310801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 113
Target Start/End: Original strand, 54681404 - 54681432
Alignment:
| Q |
85 |
aattttaagaagttttaatctcatgcatt |
113 |
Q |
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| T |
54681404 |
aattttaagaagttttaatctcatgcatt |
54681432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 6 - 113
Target Start/End: Complemental strand, 10734851 - 10734745
Alignment:
| Q |
6 |
catccactaaaaccaaaatatcatttgaggagcaacctcaacaaagaatcataaaaggaagtaacgaggataccttataaattttaagaagttttaatct |
105 |
Q |
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|||||||||||| |||| |||||||||| ||||||||||||||||| | ||||||||||||||| ||| |||||||||||| || ||||||||||||||| |
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| T |
10734851 |
catccactaaaatcaaa-tatcatttgatgagcaacctcaacaaagcaccataaaaggaagtaaagagaataccttataaacttaaagaagttttaatct |
10734753 |
T |
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| Q |
106 |
catgcatt |
113 |
Q |
| |
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|||||||| |
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| T |
10734752 |
catgcatt |
10734745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 120 - 204
Target Start/End: Complemental strand, 10734716 - 10734635
Alignment:
| Q |
120 |
tcatagatgtaagccaacaattgaaaagctaattaattgaagaatgaatgtgagacacacatctaccactacgttataaaacttt |
204 |
Q |
| |
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|||||||||||| ||||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||||||| |
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| T |
10734716 |
tcatagatgtaatccaacaattgaaaagctaa---attgaagaatgaatgtgactcatacatctaccactacgttataaaacttt |
10734635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 21143338 - 21143270
Alignment:
| Q |
4 |
atcatccactaaaaccaaaatatcatttgaggagcaacctcaacaaagaatcataaaaggaagtaacgag |
73 |
Q |
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||||||||||||||||||| |||||||||| |||||| ||||||||| ||||||||| ||||||||||| |
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| T |
21143338 |
atcatccactaaaaccaaa-tatcatttgatgagcaatctcaacaaaacatcataaaaagaagtaacgag |
21143270 |
T |
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