View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13069_high_1 (Length: 914)
Name: NF13069_high_1
Description: NF13069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13069_high_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 731; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 731; E-Value: 0
Query Start/End: Original strand, 19 - 905
Target Start/End: Original strand, 1742822 - 1743708
Alignment:
| Q |
19 |
cttctaccccgatatacgttctctccattttgatctcatgtagcaagggacaatttcttgtgagtatgaaaaaggttgagttcgttagctggcaacaacc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1742822 |
cttctaccccgatatacgttctctccattttgatctcaagtagcaagggacaatttcttgtgagtatgaaaaaggttgagttcgttagctggcaacaacc |
1742921 |
T |
|
| Q |
119 |
actaaggtttatagaggtcaagttatgaagaaatatcgataacttgttgatacattgatcagttagaaagtcagcttttcgaagatctaagaattgaaca |
218 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||| |
|
|
| T |
1742922 |
actaaggtttatagaggtcaagttaataagaaatatcgataacttgttgatacattgatcagttagaaagtcggctttacgaagatctaaggattgaaca |
1743021 |
T |
|
| Q |
219 |
tattgacatttggataaaacataaaagattcctgaaaatgtaaagttgcaacagtcttgcaagacaagttttttcagacaatcagcagaagcgtttgcga |
318 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||| ||| | ||| | ||| ||||| |
|
|
| T |
1743022 |
tattgacatttggataaaacataaaatattcctgaaaatgtaaagttgcaacagtcttgaaggacaagttttttcagaaaattaacagcaccgtctgcga |
1743121 |
T |
|
| Q |
319 |
ctgagataagaaactcatctgatataaaagaatttgacaaatcaatagcatttaatctgttcaagctcacgaatgagtcaatcaaatccaagttaatagg |
418 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
1743122 |
ctgagataagaaactcatccgatataaaagaatttgataaatcaatagcatttaatcttttcaagctcacgaatgaatcgatcaaatccaagttaatagg |
1743221 |
T |
|
| Q |
419 |
taggggtgtcaaaccaggtccatgtattcttttcttttcaatgttaaaagaaatggaagacaaacttggcctcattcggatagcaaaagcaattccagct |
518 |
Q |
| |
|
|| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |
|
|
| T |
1743222 |
taagggagtcaaaccaggtccatgtattcttttcttttcgatgttaaaagaaatggaagacaaacttggcctcattcggatagcagaagcaattccatct |
1743321 |
T |
|
| Q |
519 |
tgggatatcttgaaacattggaagaatgaaatttcttccaatgatctgcagttctggcatagagacaaaagtgatttatcagttatcaagtgattaccgg |
618 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| | |
|
|
| T |
1743322 |
tgggatatcttgaagcattggaagaatgaaatttcttccaatgatctgcagttctggcatagagacaaaagagatttatcagtgatcaagtgattaccag |
1743421 |
T |
|
| Q |
619 |
aaagatcgatcctgcgcagattctcaagcatggaagatagccttagtaatccaaaatcagatgcttgagaatccaaaggaaagctaatatcaagctcttc |
718 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
1743422 |
aaagatcgatcttgcacagattctcaagcatggaagacagccttagtaatccaaaatcagatgcttgagaatccaaaggaaagctaatgtcaagctcttc |
1743521 |
T |
|
| Q |
719 |
aagaaatgggaaacaataagctatcactaccagatggctatcgcgaagagagccaatgtttgagcaaatcaaaaccctcaagtttatcatctttgtaccg |
818 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1743522 |
aagaaatggaaagcaataagctatcactaccagatggctatcgcgaagagatccaacgttcgagcaaatcaaaaccctcaagtttatcatctttgtaccg |
1743621 |
T |
|
| Q |
819 |
agttctcgcaatccatcaacaggaagtgttctttggttggaaagattaatcaaatctaggtccaacccagattgtgaaatttgatga |
905 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
1743622 |
agttctcgcaatccatcaacaggaagtgttctttggttggaaagattaatcaaatcaaggtccaacccagattgtgaaatttgatga |
1743708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 631; E-Value: 0
Query Start/End: Original strand, 19 - 905
Target Start/End: Complemental strand, 2007560 - 2006674
Alignment:
| Q |
19 |
cttctaccccgatatacgttctctccattttgatctcatgtagcaagggacaatttcttgtgagtatgaaaaaggttgagttcgttagctggcaacaacc |
118 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
2007560 |
cttctactccgatatacgttctctccattttgatctcacttagtaagggacaatttctcgtgagtatgaaaaaggttgagtttgttagctggcaacaacc |
2007461 |
T |
|
| Q |
119 |
actaaggtttatagaggtcaagttatgaagaaatatcgataacttgttgatacattgatcagttagaaagtcagcttttcgaagatctaagaattgaaca |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
2007460 |
gctaaggtttatagaggtcaagttatgaagaaatattgaaaacttgttgatacattgatcagttagaaagtcagcttttcgaaaatctaagcattgaaca |
2007361 |
T |
|
| Q |
219 |
tattgacatttggataaaacataaaagattcctgaaaatgtaaagttgcaacagtcttgcaagacaagttttttcagacaatcagcagaagcgtttgcga |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||| | | ||||| | |
|
|
| T |
2007360 |
tattgacatttggataaaacataaaagattcctgaaaatgtaaagttgcaacagtcttgcaggacaagttttttcagacactcaacagcaccctttgcaa |
2007261 |
T |
|
| Q |
319 |
ctgagataagaaactcatctgatataaaagaatttgacaaatcaatagcatttaatctgttcaagctcacgaatgagtcaatcaaatccaagttaatagg |
418 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||| ||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
2007260 |
ctgagataagaaactcatccgatataaaggaatttgacaaatcaatagcttttaatctcttcaagctcacgaatgaatcgatcaaatccaagttaatagg |
2007161 |
T |
|
| Q |
419 |
taggggtgtcaaaccaggtccatgtattcttttcttttcaatgttaaaagaaatggaagacaaacttggcctcattcggatagcaaaagcaattccagct |
518 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||| || || |||| |||||||||| |||||||||| ||| ||||||||||| || |
|
|
| T |
2007160 |
taggggtgtcaaaccaggtccatgtcttcttttcttttcaatgttaaaggatatcgaagccaaacttggcatcattcggatcgcagaagcaattccaact |
2007061 |
T |
|
| Q |
519 |
tgggatatcttgaaacattggaagaatgaaatttcttccaatgatctgcagttctggcatagagacaaaagtgatttatcagttatcaagtgattaccgg |
618 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||| |||||||| || | ||||||||||| | |
|
|
| T |
2007060 |
tgggatattttgaaacattggaagaataaaatttcttccagtgatctacagttctggcatagagacaaaagggatttatcggtggttaagtgattaccag |
2006961 |
T |
|
| Q |
619 |
aaagatcgatcctgcgcagattctcaagcatggaagatagccttagtaatccaaaatcagatgcttgagaatccaaaggaaagctaatatcaagctcttc |
718 |
Q |
| |
|
||||||| || ||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
2006960 |
aaagatcaattttgcgcagattctcgagcatggaagattaccttattaatccaaaatcagatgcttgagaatccaaaggaaagctaatgtcaagctcttc |
2006861 |
T |
|
| Q |
719 |
aagaaatgggaaacaataagctatcactaccagatggctatcgcgaagagagccaatgtttgagcaaatcaaaaccctcaagtttatcatctttgtaccg |
818 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
2006860 |
aagaaatggaaagcaataagctatcactaccagatggctatcgcaaagagagccaatgtttgagcaaatcaaaaccctcaggtttatcatctttgaaccg |
2006761 |
T |
|
| Q |
819 |
agttctcgcaatccatcaacaggaagtgttctttggttggaaagattaatcaaatctaggtccaacccagattgtgaaatttgatga |
905 |
Q |
| |
|
|| |||||||||||||||||||||| |||||| |||||||||||||||| ||||| ||||||| |||||||||||||| ||||||| |
|
|
| T |
2006760 |
agctctcgcaatccatcaacaggaactgttctctggttggaaagattaacgaaatcaaggtccagcccagattgtgaaacttgatga |
2006674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 236 - 552
Target Start/End: Complemental strand, 1498791 - 1498475
Alignment:
| Q |
236 |
aacataaaagattcctgaaaatgtaaagttgcaacagtcttgcaagacaagttttttcagacaatcagcagaagcgtttgcgactgagataagaaactca |
335 |
Q |
| |
|
|||||||| ||||||||||||| ||||||| || |||| ||| | ||| | | |||| ||| ||||| | | || ||| |||||||||||||| || |
|
|
| T |
1498791 |
aacataaatgattcctgaaaatttaaagttacaccagtattggaggaccaatattttaagaaaatcacgaccatggtctgcaactgagataagaaaacca |
1498692 |
T |
|
| Q |
336 |
tctgatataaaagaatttgacaaatcaatagcatttaatctgttcaagctcacgaatgagtcaatcaaatccaagttaataggtaggggtgtcaaaccag |
435 |
Q |
| |
|
| || |||||||| ||||| ||| ||||||| ||||||| || || || ||||||||||| |||||||||| ||||||||||||||| |||| |||| |
|
|
| T |
1498691 |
ttcgagataaaagagtttgagaaaccaatagcttttaatcattttaaactagcgaatgagtcagtcaaatccaatttaataggtaggggtttcaatccag |
1498592 |
T |
|
| Q |
436 |
gtccatgtattcttttcttttcaatgttaaaagaaatggaagacaaacttggcctcattcggatagcaaaagcaattccagcttgggatatcttgaaaca |
535 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||||||||| |||||| || | ||| ||| ||| || ||| ||| |||||| |||||| ||||| |
|
|
| T |
1498591 |
gtccatgtagtcttttcttttcaacgttaaaagaaatggaacccaaactaggaattattttgattgcacaaacaaggccaacttgggttatcttaaaaca |
1498492 |
T |
|
| Q |
536 |
ttggaagaatgaaattt |
552 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
1498491 |
tgtgaagaatgaaattt |
1498475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 116
Target Start/End: Complemental strand, 374193 - 374107
Alignment:
| Q |
30 |
atatacgttctctccattttgatctcatgtagcaagggacaatttcttgtgagtatgaaaaaggttgagttcgttagctggcaacaa |
116 |
Q |
| |
|
||||| |||||||||||||| |||||| | || || || | |||||| ||| ||||||||||| ||||||| |||||||| ||||| |
|
|
| T |
374193 |
atatatgttctctccattttaatctcacggagtaaagggtagtttcttttgattatgaaaaaggatgagttcattagctggaaacaa |
374107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 358 - 415
Target Start/End: Complemental strand, 374024 - 373967
Alignment:
| Q |
358 |
aatcaatagcatttaatctgttcaagctcacgaatgagtcaatcaaatccaagttaat |
415 |
Q |
| |
|
|||||||| |||||||||| || |||||||||||||| | ||||||| ||||||||| |
|
|
| T |
374024 |
aatcaataacatttaatcttttgaagctcacgaatgaaacgatcaaattcaagttaat |
373967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University