View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13069_high_3 (Length: 390)
Name: NF13069_high_3
Description: NF13069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13069_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 5 - 374
Target Start/End: Complemental strand, 37307912 - 37307543
Alignment:
| Q |
5 |
tccataaggtcctccaaacagtgtgacaagtgtacgagctgaagcttaaataaggcaatccaactaaatatatttaaattccactaactaaactattatg |
104 |
Q |
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| T |
37307912 |
tccataaggtcttccaaacagtttgacaagtgtacaagctgaagcttaaataaggaaatccaactaaatatatttgaattccactaactaaacaattatg |
37307813 |
T |
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| Q |
105 |
aatgaatttgattgttttagaattgaattttcgaaataaagagaagaagaaagaaagagttacagaatcaggagtgatgacaagttgaggaggaacaaag |
204 |
Q |
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| T |
37307812 |
aatgaatttgattgttttagaattgaattttcgaaataaagagaagaagaaagaaagagttacagaatcaggagtgatgacaagttgaggaggaacaaag |
37307713 |
T |
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| Q |
205 |
agaagcttctctcctttcctaatattgttcaaagcaacaagacctctctcacctacatcaactttatcaatggacatcttctgagaaggaagaccagact |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37307712 |
agaagcttctctcctttcctaatattgttcaaagcaacaagacctctctcacctacatcaactttatcaatggacatcttctgagaaggaagaccagact |
37307613 |
T |
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| Q |
305 |
gagacagccatttctgaagagaagatgaattttcaattgaatcattctcacatccccaaggaatagtttc |
374 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37307612 |
gagacaaccatttctgaagagaagatgaattttcaattgaatcattctcacatccccaaggaatagtttc |
37307543 |
T |
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