View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13069_high_6 (Length: 354)
Name: NF13069_high_6
Description: NF13069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13069_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 48754130 - 48753791
Alignment:
| Q |
1 |
aaataaaaacaaactatcaaaacgaaaataaagttcatcctatgctaatacccttggcacattgacattgttgttttaacttgcaatgggttgtgcaatg |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
48754130 |
aaataaaaacaaactatcaaaacaaaaataaagttcatcctatgctaatacccttggcacattgccattgttgttttaacttgcaatgggttgtgcaatg |
48754031 |
T |
|
| Q |
101 |
acttttttgacagcttcagcatatgtctt-gtgctgataggtaagtgtggattcaagcaggtcttcaagtgaagtctttggattccatccaagctgcttg |
199 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48754030 |
acttttttgacagcttcagcatatgtctttgtgctgataggtaagtgtggattcaagcaggtcttcaagtgaagtctttggattccatccaagctgcttg |
48753931 |
T |
|
| Q |
200 |
ttgatgattgtcatgtcaggaattctcttgtcactatcatcatatccctcaccgtaaaattctttcgagctcacatcaactgtaggtgtttcaagaggtt |
299 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48753930 |
ttgatgatggtcatgtcaggaattctcttgtcactatcatcatatccctcaccgtaaaattctttcgagctcacatcaactgtaggtgtttcaagaggtt |
48753831 |
T |
|
| Q |
300 |
gatcaccacttacctttgaataaaccttgatcatcatttc |
339 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
48753830 |
gatcaccacttacctttgaataaaccttgatcatcatttc |
48753791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 71 - 339
Target Start/End: Complemental strand, 49052694 - 49052426
Alignment:
| Q |
71 |
ttgttttaacttgcaatgggttgtgcaatgacttttttgacagcttcagcatatgtcttgtgctgataggtaagtgtggattcaagcaggtcttcaagtg |
170 |
Q |
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||||||||||||||||||| ||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
49052694 |
ttgttttaacttgcaatggtttgtgcaatgactttcttaatagcttcagcatatgtcttgtgctgataggtaagtgtggattcaagcaggtcctcaagtg |
49052595 |
T |
|
| Q |
171 |
aagtctttggattccatccaagctgcttgttgatgattgtcatgtcaggaattctcttgtcactatcatcatatccctcaccgtaaaattctttcgagct |
270 |
Q |
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||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49052594 |
aagtcttcggattccatccaagctgcttgttgatgatggtcatatcaggaattctcttgtcactatcatcatatccctcaccgtaaaattctttcgagct |
49052495 |
T |
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| Q |
271 |
cacatcaactgtaggtgtttcaagaggttgatcaccacttacctttgaataaaccttgatcatcatttc |
339 |
Q |
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|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49052494 |
cacatcaattgtaggagtttcaagaggttgatcaccacttacctttgaataaaccttgatcatcatttc |
49052426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 3e-42; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 191 - 326
Target Start/End: Original strand, 20488359 - 20488494
Alignment:
| Q |
191 |
agctgcttgttgatgattgtcatgtcaggaattctcttgtcactatcatcatatccctcaccgtaaaattctttcgagctcacatcaactgtaggtgttt |
290 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |
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| T |
20488359 |
agctgcttgttgattatggtcatgtcaggaattctcttgtcactatcatcatatccctcaccataaaattctttcgagctcacatcaatcgtaggtgttt |
20488458 |
T |
|
| Q |
291 |
caagaggttgatcaccacttacctttgaataaacct |
326 |
Q |
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|| | |||||| ||||| ||||||||||| |||| |
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| T |
20488459 |
caggtggttgagttccactaacctttgaatagacct |
20488494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 74 - 187
Target Start/End: Original strand, 20488155 - 20488268
Alignment:
| Q |
74 |
ttttaacttgcaatgggttgtgcaatgacttttttgacagcttcagcatatgtcttgtgctgataggtaagtgtggattcaagcaggtcttcaagtgaag |
173 |
Q |
| |
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|||||||||||||| ||||| ||||||||||| || | ||||| || |||||| |||||||||||||||||||||||||||||||||| |||||||| |
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| T |
20488155 |
ttttaacttgcaattggttgagcaatgactttcttaatggcttcggcgtatgtcctgtgctgataggtaagtgtggattcaagcaggtcccaaagtgaag |
20488254 |
T |
|
| Q |
174 |
tctttggattccat |
187 |
Q |
| |
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|||||||||||||| |
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| T |
20488255 |
tctttggattccat |
20488268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 94 - 162
Target Start/End: Complemental strand, 35914211 - 35914143
Alignment:
| Q |
94 |
tgcaatgacttttttgacagcttcagcatatgtcttgtgctgataggtaagtgtggattcaagcaggtc |
162 |
Q |
| |
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||||||||||| ||| | ||||| |||||| |||| ||||| ||||||||||||||||||||||||||| |
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| T |
35914211 |
tgcaatgacttctttaatagcttaagcataagtctcgtgcttataggtaagtgtggattcaagcaggtc |
35914143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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