View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13069_low_6 (Length: 362)
Name: NF13069_low_6
Description: NF13069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13069_low_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 318; Significance: 1e-179; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 18 - 351
Target Start/End: Original strand, 7329615 - 7329948
Alignment:
| Q |
18 |
agttgtgcatctggtatgatatgattttatcttatgagttagaatctgtttgtttaggatgtattgacacttctctagaaaaggtttgctttagtagcga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7329615 |
agttgtgcatctggtatgatatgattttatcttatgagttagaatctgtttgtttaggatgtattgacacttctctagaaaaggtttgctttagtagcga |
7329714 |
T |
|
| Q |
118 |
caatagcgatgcaacacaacaatattctataaatctgatcacaaagtctgatgcatccagttctgatttaaggtcatgtaactaatgaatctgaaatgaa |
217 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7329715 |
caatagcaatgcaacacaacaatattctataaatctgatcacaaagtctgatgcatccagttctgatttaaggtcatgtaactaatgaatctgaaatgaa |
7329814 |
T |
|
| Q |
218 |
tgaaatgagctttggaaacttgagaatgaggaaaactctattatgaaattaccactgcagtacatatctgatagttccaagcactacagtttgcaacttg |
317 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7329815 |
tgaaatgaactttggaaacttgagaatgaggaaaactctattaggaaattaccactgcagtacatatctgatagttccaagcactacagtttgcaacttg |
7329914 |
T |
|
| Q |
318 |
ttggcatgttataagatgctataaacttgagaat |
351 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |
|
|
| T |
7329915 |
ttggcatattataagatgctataaacttgagaat |
7329948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 46 - 267
Target Start/End: Complemental strand, 7310334 - 7310115
Alignment:
| Q |
46 |
atcttatgagttagaatctgtttgtttaggatgtattgacacttctctagaaaaggtttgctttagtagcgacaatagcgatgcaacacaacaatattct |
145 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
7310334 |
atcttctgagttagaatctgtttgtttaggatgtattgacacttatctcgaaaagttttgctttagttgcgacaatagcgatgca---caacaatattct |
7310238 |
T |
|
| Q |
146 |
ataaatctgatcacaaagtctgatgcatccagttctgatttaaggtcatgtaactaatgaatctg-aaatgaatgaaatgagctttggaaacttgagaat |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||| ||||| |||||||| | | || ||| ||||||||||||| |
|
|
| T |
7310237 |
ataaatctgatcacaaagtctgatgcatccagttctgatttagggtcatgttactgatgcatctgaaaatgaattagaagaacttcggaaacttgagaaa |
7310138 |
T |
|
| Q |
245 |
gaggaaaactctattatgaaatt |
267 |
Q |
| |
|
| |||||||| |||||| ||||| |
|
|
| T |
7310137 |
ggggaaaactttattatcaaatt |
7310115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 133 - 213
Target Start/End: Complemental strand, 7300924 - 7300846
Alignment:
| Q |
133 |
acaacaatattctataaatctgatcacaaagtctgatgcatccagttctgatttaaggtcatgtaactaatgaatctgaaa |
213 |
Q |
| |
|
||||||| ||||| ||||| ||||| || ||||||||||||||||||||||||| |||||||| ||||||| ||| |||| |
|
|
| T |
7300924 |
acaacaacattctgtaaatttgatcgca--gtctgatgcatccagttctgatttagggtcatgttactaatgcatccgaaa |
7300846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 217 - 264
Target Start/End: Complemental strand, 22482321 - 22482274
Alignment:
| Q |
217 |
atgaaatgagctttggaaacttgagaatgaggaaaactctattatgaa |
264 |
Q |
| |
|
||||||||||||||||||| || ||||| |||||||||||||||||| |
|
|
| T |
22482321 |
atgaaatgagctttggaaagttaagaatcgggaaaactctattatgaa |
22482274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 323
Target Start/End: Complemental strand, 7310079 - 7310039
Alignment:
| Q |
283 |
atctgatagttccaagcactacagtttgcaacttgttggca |
323 |
Q |
| |
|
||||||| ||||||||||||||| |||| |||||||||||| |
|
|
| T |
7310079 |
atctgattgttccaagcactacattttgtaacttgttggca |
7310039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University