View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1306_high_15 (Length: 323)

Name: NF1306_high_15
Description: NF1306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1306_high_15
NF1306_high_15
[»] chr3 (3 HSPs)
chr3 (1-274)||(19766508-19766781)
chr3 (30-204)||(17682304-17682480)
chr3 (235-271)||(17682269-17682305)
[»] chr4 (4 HSPs)
chr4 (30-128)||(22292105-22292201)
chr4 (131-204)||(22292289-22292362)
chr4 (192-271)||(29862905-29862984)
chr4 (57-114)||(29862802-29862857)
[»] chr6 (6 HSPs)
chr6 (30-128)||(15434131-15434227)
chr6 (57-128)||(10093072-10093141)
chr6 (57-128)||(33044884-33044953)
chr6 (131-210)||(15434298-15434377)
chr6 (188-271)||(33044986-33045069)
chr6 (227-271)||(10092970-10093014)
[»] scaffold0045 (1 HSPs)
scaffold0045 (57-128)||(11072-11141)
[»] chr8 (6 HSPs)
chr8 (57-128)||(5658370-5658439)
chr8 (57-128)||(14677460-14677529)
chr8 (57-128)||(31100310-31100379)
chr8 (190-271)||(14677564-14677645)
chr8 (188-271)||(5658254-5658337)
chr8 (188-271)||(31100412-31100495)
[»] scaffold0035 (2 HSPs)
scaffold0035 (57-127)||(35676-35744)
scaffold0035 (188-271)||(35559-35642)


Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 19766781 - 19766508
Alignment:
Q  1 gagacctaaatctgattatgttgtgaacctaatgaatggaattgaagaaacaactgagaggtggagagtgtgattaaactcaaaacacaattcatttcat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19766781 gagacctaaatctgattatgttgtgaacctaatgaatggaattgaagaaacaactgagaggtggagagtgtgattaaactcaaaacacaattcatttcat 19766682  T
Q  101 agaaagggaaaagcgattaccttgagagcattgttgatgaatggagagagcaacgacaggagcttccaatcgagattgcaaatttccatggcttctttct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19766681 agaaagggaaaagcgattaccttgagagcattgttgatgaatggagagagcaacgacaggagcttccaatcgagattgcaaatttccatggcttctttct 19766582  T
Q  201 ctttattcggggtggcatgtttttgttggaaaaattgtgcggttctttttgcttgtctagctgatacgatgatg 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19766581 ctttattcggggtggcatgtttttgttggaaaaattgtgcggttctttttgcttgtctagctgatacgatgatg 19766508  T

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Target: chr3; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 30 - 204
Target Start/End: Complemental strand, 17682480 - 17682304
Alignment:
Q  30 taatgaatggaattgaagaaacaac----tgagaggtggagagtgtgattaaactcaaaacacaattcatttcatagaaagggaaaagcgattaccttga 125  Q
    ||||||||||||||||||||||||     ||||||||||||||||  ||||| |||||||||||||||| ||||||||||||||||| ||||||||||||    
T  17682480 taatgaatggaattgaagaaacaatatattgagaggtggagagtg--attaatctcaaaacacaattcaattcatagaaagggaaaaacgattaccttga 17682383  T
Q  126 gagcattgttgatgaatggagagagcaacgacaggagcttccaatcgagattgcaaatttccatggcttctttctcttt 204  Q
    |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  17682382 gagcattgttgatgaagggagagagcaacgacgggagcttccaatcgagattgcaaatttccatggcttctttctcttt 17682304  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 271
Target Start/End: Complemental strand, 17682305 - 17682269
Alignment:
Q  235 ttgtgcggttctttttgcttgtctagctgatacgatg 271  Q
    |||||||||||||||||||||||| ||||||||||||    
T  17682305 ttgtgcggttctttttgcttgtctggctgatacgatg 17682269  T

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Target: chr4 (Bit Score: 64; Significance: 6e-28; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 30 - 128
Target Start/End: Original strand, 22292105 - 22292201
Alignment:
Q  30 taatgaatggaattgaagaaacaactgagaggtggagagtgtgattaaactcaaaacacaattcatttcatagaaagggaaaagcgattaccttgagag 128  Q
    ||||||||| ||||||||||||||||||||||||||||||   |||| ||| ||||||||||||| | |||||||||||||||||||||||||||||||    
T  22292105 taatgaatgcaattgaagaaacaactgagaggtggagagta--attagactaaaaacacaattcaatacatagaaagggaaaagcgattaccttgagag 22292201  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 131 - 204
Target Start/End: Original strand, 22292289 - 22292362
Alignment:
Q  131 ttgttgatgaatggagagagcaacgacaggagcttccaatcgagattgcaaatttccatggcttctttctcttt 204  Q
    ||||||||||| ||||||||||||||  ||||| |||| | ||||||||||||||||||||||| |||||||||    
T  22292289 ttgttgatgaacggagagagcaacgatgggagcctccacttgagattgcaaatttccatggcttatttctcttt 22292362  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 271
Target Start/End: Original strand, 29862905 - 29862984
Alignment:
Q  192 cttctttctctttattcggggtggcatgtttttgttggaaaaattgtgcggttctttttgcttgtctagctgatacgatg 271  Q
    |||||||||||||||  || |||||| ||||| | |||||||||||||  |||||||||| ||| || ||||||||||||    
T  29862905 cttctttctctttatatggagtggcaggttttaggtggaaaaattgtgttgttctttttgtttgcctggctgatacgatg 29862984  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 114
Target Start/End: Original strand, 29862802 - 29862857
Alignment:
Q  57 agaggtggagagtgtgattaaactcaaaacacaattcatttcatagaaagggaaaagc 114  Q
    ||||||||||||||  |||| ||||| ||||||||||| ||||||||||| |||||||    
T  29862802 agaggtggagagtg--attagactcataacacaattcaattcatagaaagagaaaagc 29862857  T

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Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 30 - 128
Target Start/End: Original strand, 15434131 - 15434227
Alignment:
Q  30 taatgaatggaattgaagaaacaactgagaggtggagagtgtgattaaactcaaaacacaattcatttcatagaaagggaaaagcgattaccttgagag 128  Q
    ||||||||||||||||||||||||||||||||||  ||| ||||||| ||| ||||||||||||| | | ||||||||||||||||||||| |||||||    
T  15434131 taatgaatggaattgaagaaacaactgagaggtg--gagggtgattagactaaaaacacaattcaatacgtagaaagggaaaagcgattacgttgagag 15434227  T

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Target: chr6; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 57 - 128
Target Start/End: Complemental strand, 10093141 - 10093072
Alignment:
Q  57 agaggtggagagtgtgattaaactcaaaacacaattcatttcatagaaagggaaaagcgattaccttgagag 128  Q
    ||||||||||||||  |||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  10093141 agaggtggagagtg--attagactcaaaacacaattcaattcatagaaagggaaaagctattaccttgagag 10093072  T

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Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 57 - 128
Target Start/End: Original strand, 33044884 - 33044953
Alignment:
Q  57 agaggtggagagtgtgattaaactcaaaacacaattcatttcatagaaagggaaaagcgattaccttgagag 128  Q
    ||||||||||||||  |||| ||||||||||||||||| |||||||||| |||||||| |||||||||||||    
T  33044884 agaggtggagagtg--attagactcaaaacacaattcaattcatagaaaaggaaaagctattaccttgagag 33044953  T

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Target: chr6; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 131 - 210
Target Start/End: Original strand, 15434298 - 15434377
Alignment:
Q  131 ttgttgatgaatggagagagcaacgacaggagcttccaatcgagattgcaaatttccatggcttctttctctttattcgg 210  Q
    ||||||||||| ||||||||||||||  |||||  ||| | ||||||||||||||||||||||| ||||||||| |||||    
T  15434298 ttgttgatgaagggagagagcaacgatgggagcccccacttgagattgcaaatttccatggcttatttctcttttttcgg 15434377  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 271
Target Start/End: Original strand, 33044986 - 33045069
Alignment:
Q  188 atggcttctttctctttattcggggtggcatgtttttgttggaaaaattgtgcggttctttttgcttgtctagctgatacgatg 271  Q
    |||||||||||||||||||  || |||||| ||||| | |||||||||||||  |||||||||| ||| || | ||||||||||    
T  33044986 atggcttctttctctttatctggagtggcaggttttaggtggaaaaattgtgttgttctttttgtttgcctggatgatacgatg 33045069  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 271
Target Start/End: Complemental strand, 10093014 - 10092970
Alignment:
Q  227 tggaaaaattgtgcggttctttttgcttgtctagctgatacgatg 271  Q
    |||||||||||||| |||||||||| ||| || ||||||||||||    
T  10093014 tggaaaaattgtgctgttctttttgtttgcctggctgatacgatg 10092970  T

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Target: scaffold0045 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 57 - 128
Target Start/End: Original strand, 11072 - 11141
Alignment:
Q  57 agaggtggagagtgtgattaaactcaaaacacaattcatttcatagaaagggaaaagcgattaccttgagag 128  Q
    ||||||||||||||  |||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  11072 agaggtggagagtg--attagactcaaaacacaattcaattcatagaaagggaaaagctattaccttgagag 11141  T

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Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 57 - 128
Target Start/End: Complemental strand, 5658439 - 5658370
Alignment:
Q  57 agaggtggagagtgtgattaaactcaaaacacaattcatttcatagaaagggaaaagcgattaccttgagag 128  Q
    ||||||||||||||  |||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  5658439 agaggtggagagtg--attagactcaaaacacaattcaattcatagaaagggaaaagctattaccttgagag 5658370  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 57 - 128
Target Start/End: Original strand, 14677460 - 14677529
Alignment:
Q  57 agaggtggagagtgtgattaaactcaaaacacaattcatttcatagaaagggaaaagcgattaccttgagag 128  Q
    ||||||||||||||  |||  ||||| ||||||||||| ||||||||||||||||||| |||||||||||||    
T  14677460 agaggtggagagtg--attggactcagaacacaattcaattcatagaaagggaaaagctattaccttgagag 14677529  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 57 - 128
Target Start/End: Original strand, 31100310 - 31100379
Alignment:
Q  57 agaggtggagagtgtgattaaactcaaaacacaattcatttcatagaaagggaaaagcgattaccttgagag 128  Q
    ||||||||||||||  |||| ||||||||||||||||| |||||||||| | |||||| |||||||||||||    
T  31100310 agaggtggagagtg--attagactcaaaacacaattcaattcatagaaaagaaaaagctattaccttgagag 31100379  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 271
Target Start/End: Original strand, 14677564 - 14677645
Alignment:
Q  190 ggcttctttctctttattcggggtggcatgtttttgttggaaaaattgtgcggttctttttgcttgtctagctgatacgatg 271  Q
    |||||||||||||||||  || |||||| ||||| | |||||||||||||  |||||||||| ||| || ||||||||||||    
T  14677564 ggcttctttctctttatatggagtggcaggttttaggtggaaaaattgtgttgttctttttgtttgcctggctgatacgatg 14677645  T

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Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 271
Target Start/End: Complemental strand, 5658337 - 5658254
Alignment:
Q  188 atggcttctttctctttattcggggtggcatgtttttgttggaaaaattgtgcggttctttttgcttgtctagctgatacgatg 271  Q
    |||||||||||||||||||  || |||||| ||||| | ||||||| |||||  |||||||||| |||||| | ||||||||||    
T  5658337 atggcttctttctctttatctggagtggcaggttttaggtggaaaagttgtgttgttctttttgtttgtctggatgatacgatg 5658254  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 188 - 271
Target Start/End: Original strand, 31100412 - 31100495
Alignment:
Q  188 atggcttctttctctttattcggggtggcatgtttttgttggaaaaattgtgcggttctttttgcttgtctagctgatacgatg 271  Q
    |||||||||||||||||||  || ||||||  |||| | |||||||||||||  |||||||||| ||| || | ||||||||||    
T  31100412 atggcttctttctctttatctggagtggcagattttaggtggaaaaattgtgttgttctttttgtttgcctggatgatacgatg 31100495  T

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Target: scaffold0035 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 57 - 127
Target Start/End: Complemental strand, 35744 - 35676
Alignment:
Q  57 agaggtggagagtgtgattaaactcaaaacacaattcatttcatagaaagggaaaagcgattaccttgaga 127  Q
    ||||||||||||||  |||| ||||| ||||||||||| ||||||||||||||||||| ||||||||||||    
T  35744 agaggtggagagtg--attagactcagaacacaattcaattcatagaaagggaaaagctattaccttgaga 35676  T

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Target: scaffold0035; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 188 - 271
Target Start/End: Complemental strand, 35642 - 35559
Alignment:
Q  188 atggcttctttctctttattcggggtggcatgtttttgttggaaaaattgtgcggttctttttgcttgtctagctgatacgatg 271  Q
    |||||||||||||||||||  || |||||| ||||| | |||||||||||||  |||||||||| ||| || ||||||||||||    
T  35642 atggcttctttctctttatatggagtggcaggttttaggtggaaaaattgtgttgttctttttgtttgcctggctgatacgatg 35559  T

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