View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1306_high_19 (Length: 293)
Name: NF1306_high_19
Description: NF1306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1306_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 43 - 233
Target Start/End: Complemental strand, 39672388 - 39672198
Alignment:
| Q |
43 |
tagctgttgcccacataagaagccataacaaagaatacccagcaatggcaccagcttgtaggtctccttctaagttccctggatccaaaaacgctatact |
142 |
Q |
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| T |
39672388 |
tagctgtggcccacataagaagccataacaaagaatacccagcaatggcaccagcttgtaggtctccttctaagttccctggatccaaaaacgctatact |
39672289 |
T |
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| Q |
143 |
cattagaaaaccaggtccagtgaatagccatagcttcttccatgaaaatggtggcaccgaggtaccccagtttgtggattcgtctattcct |
233 |
Q |
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| T |
39672288 |
cattagaaaaccaggtccagtgaatagccatagcttcttccatgaaaatggtggcaccgaggtaccccagtttgtggattcgtctattcct |
39672198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 51 - 190
Target Start/End: Original strand, 9562381 - 9562520
Alignment:
| Q |
51 |
gcccacataagaagccataacaaagaatacccagcaatggcaccagcttgtaggtctccttctaagttccctggatccaaaaacgctatactcattagaa |
150 |
Q |
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| T |
9562381 |
gcccacataagaagtcataacaatgaatacccagaaattgtaccagattaaagatcttcttccaagtttccaagatccaaaaatgctatactcattagaa |
9562480 |
T |
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| Q |
151 |
aaccaggtccagtgaatagccatagcttcttccatgaaaa |
190 |
Q |
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| T |
9562481 |
aacccggtccactgaataagggtagtttcttccatgaaaa |
9562520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 51 - 196
Target Start/End: Original strand, 5805471 - 5805616
Alignment:
| Q |
51 |
gcccacataagaagccataacaaagaatacccagcaatggcaccagcttgtaggtctccttctaagttccctggatccaaaaacgctatactcattagaa |
150 |
Q |
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| T |
5805471 |
gcccacataagaagccataacaatgaatacccagcaattgcaccagattgaagatctccttccaagtttccaggatccaaaaatgctatactcattagaa |
5805570 |
T |
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| Q |
151 |
aaccaggtccagtgaatagccatagcttcttccatgaaaatggtgg |
196 |
Q |
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| T |
5805571 |
aacctggtccactgaataaccagagtttcttccatgaaaacggtgg |
5805616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 53 - 196
Target Start/End: Complemental strand, 10388189 - 10388046
Alignment:
| Q |
53 |
ccacataagaagccataacaaagaatacccagcaatggcaccagcttgtaggtctccttctaagttccctggatccaaaaacgctatactcattagaaaa |
152 |
Q |
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| T |
10388189 |
ccacattaaaagccaaagcaacgagtaccctgcaatcgcaccggcttgcaagtctccttctatgtttcctggatccaaaaatgccacactcattagaagc |
10388090 |
T |
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| Q |
153 |
ccaggtccagtgaatagccatagcttcttccatgaaaatggtgg |
196 |
Q |
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| T |
10388089 |
cctggccccgtgaagagccagagcttcttccatgaaaatggtgg |
10388046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 51 - 190
Target Start/End: Original strand, 21016811 - 21016950
Alignment:
| Q |
51 |
gcccacataagaagccataacaaagaatacccagcaatggcaccagcttgtaggtctccttctaagttccctggatccaaaaacgctatactcattagaa |
150 |
Q |
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| T |
21016811 |
gcccacataagaagtcataacaacgaataccaagaaattacaccagattgaagatctccttccaagtttccaggatccaaaaatgttatactcattagaa |
21016910 |
T |
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| Q |
151 |
aaccaggtccagtgaatagccatagcttcttccatgaaaa |
190 |
Q |
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| T |
21016911 |
aacctagcccactgaataaccgttgtttcttccatgaaaa |
21016950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 65 - 196
Target Start/End: Complemental strand, 47290208 - 47290077
Alignment:
| Q |
65 |
ccataacaaagaatacccagcaatggcaccagcttgtaggtctccttctaagttccctggatccaaaaacgctatactcattagaaaaccaggtccagtg |
164 |
Q |
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| T |
47290208 |
ccatagcaatgaataccctgcaatcgctcctgcttgtagatcaccttccaaattcccaggatccaaaaatgctatactcatcaagaatcctggtcctgtg |
47290109 |
T |
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| Q |
165 |
aatagccatagcttcttccatgaaaatggtgg |
196 |
Q |
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| T |
47290108 |
aacatccatagcttcttccatgaaaaaggtgg |
47290077 |
T |
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