View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1306_high_27 (Length: 248)
Name: NF1306_high_27
Description: NF1306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1306_high_27 |
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Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 29946574 - 29946814
Alignment:
| Q |
1 |
acttgagttcaaaatatacatgtataacgataataaaacaacacagtcataatgacttatcaattagagaagaaaagattctaacttttgcaacccattt |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29946574 |
acttgaattcaaaatatacatgtataacgataataatacaacacagtcataatgacttatcaattagagaagaaaagattctaacttttgcaacccattt |
29946673 |
T |
|
| Q |
101 |
tccatgtgtgcatccagcgacgatattactctcggcaactgctccaaaacctgtacaacaaaaccgaaaccattacacacacttcaaacgtttgctcaca |
200 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
29946674 |
tccatgtgtgcatccagagacgatattactctcggcaactgctctaaaacctgtacaacaaaaccaaaaccattacacacacttcaaacgtttgctcaca |
29946773 |
T |
|
| Q |
201 |
ctcaacaacaacattacatcaattcaattacctgctctgtg |
241 |
Q |
| |
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||||||||||||||| |||||||||||||||||||| |||| |
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| T |
29946774 |
ctcaacaacaacatttcatcaattcaattacctgctgtgtg |
29946814 |
T |
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