View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1306_low_1 (Length: 674)
Name: NF1306_low_1
Description: NF1306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1306_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 285; Significance: 1e-159; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 97 - 389
Target Start/End: Original strand, 24555178 - 24555470
Alignment:
| Q |
97 |
cttatagggttggattttgtttggatacaacaggtgattgtgcttatcttggattacaagagtttaattctggtgaaggtggatcacgtttgattttgac |
196 |
Q |
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| T |
24555178 |
cttatagggttggattttgtttggatacaacaggtgattgtgcttatcttggattacaagagtttaattctggtgaaggtggatcacgtttgattttgac |
24555277 |
T |
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| Q |
197 |
tgcaattgatgcttattctgttgtatttgttgatgctgcttctattaaatctggaaatagtgcaaatagtgcattacctatttagtatgggttttaatga |
296 |
Q |
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| T |
24555278 |
tgcaattaatgcttattctgttgtatttgttgatgctgcttctattaaatctggaaatagtgcaaatagtgcattacctatttagtatgggttttaatga |
24555377 |
T |
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| Q |
297 |
ataagtggagtaattgtatttattcctttcttatgatgaataattctacttgttttgatcaaagaagttgatcttgtattccattatcctatc |
389 |
Q |
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| T |
24555378 |
ataagtggagtaattgtatttattcctttcttatgatgaataattgtacttgttttgatcaaagaagttgatcttgtattccattatcctatc |
24555470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 420 - 629
Target Start/End: Original strand, 24555528 - 24555736
Alignment:
| Q |
420 |
aattaagactttgtccatgatttatgacataaagtgataaagttcgactttataactttaaagatattatttgaatcagcaatgctatatgtggcgagat |
519 |
Q |
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| T |
24555528 |
aattaagactttgtccatgatttatgacataaagtgataaagttcgactttataactttaaagatattatttgaatcagcaatgctata--tggcgagtt |
24555625 |
T |
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| Q |
520 |
aattcctcgcgaatcctcacgaatgaccatacagcttgtgctgtatgatttga-tcacaacatgtttaatctatcaaagacatagattaagtattaatca |
618 |
Q |
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| T |
24555626 |
aattcctcgtgaatccacacgaatgaccatacagtttgtgctatatgatcggattgacaacatgtttaatctatcaaagacatacattaagtataaatca |
24555725 |
T |
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| Q |
619 |
tatgcttgatc |
629 |
Q |
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||||||||||| |
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| T |
24555726 |
tatgcttgatc |
24555736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 98 - 233
Target Start/End: Original strand, 2917200 - 2917335
Alignment:
| Q |
98 |
ttatagggttggattttgtttggatacaacaggtgattgtgcttatcttggattacaagagtttaattctggtgaaggtggatcacgtttgattttgact |
197 |
Q |
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||||||| ||||||||||||||||| ||| |||||||||| |||| ||||| | ||| ||| ||||||| |||||||||||||||||| |||||||| |
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| T |
2917200 |
ttataggcttggattttgtttggatgtaactggtgattgtggttatattggacttcaaatgttcaattctgaagaaggtggatcacgtttgtttttgact |
2917299 |
T |
|
| Q |
198 |
gcaattgatgcttattctgttgtatttgttgatgct |
233 |
Q |
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||| |||||||||||||||||||||||||||||||| |
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| T |
2917300 |
gcagttgatgcttattctgttgtatttgttgatgct |
2917335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 97 - 249
Target Start/End: Original strand, 24566887 - 24567039
Alignment:
| Q |
97 |
cttatagggttggattttgtttggatacaacaggtgattgtgcttatcttggattacaagagtttaattctggtgaaggtggatcacgtttgattttgac |
196 |
Q |
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|||||||| |||||||||||||||||||||| || ||||||| || | ||| ||| || || ||||| | || |||||| ||||||||||||| || |
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| T |
24566887 |
cttataggattggattttgtttggatacaactggagattgtggttttattgcattggaatttttcaattccgaagatggtggaccacgtttgatttttac |
24566986 |
T |
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| Q |
197 |
tgcaattgatgcttattctgttgtatttgttgatgctgcttctattaaatctg |
249 |
Q |
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|| | |||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
24566987 |
tgtgaatgatgcttattctgttgtttttgttgatgctgcttctattaaatctg |
24567039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 98 - 229
Target Start/End: Original strand, 2930788 - 2930919
Alignment:
| Q |
98 |
ttatagggttggattttgtttggatacaacaggtgattgtgcttatcttggattacaagagtttaattctggtgaaggtggatcacgtttgattttgact |
197 |
Q |
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||||||| ||||||||||||||||| ||| || |||||| ||| ||||| | ||| ||| ||||||| |||||||||||||||||| |||||||| |
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| T |
2930788 |
ttataggcttggattttgtttggatgtaactggaaattgtggctatattggacttcaaatgttcaattctgaagaaggtggatcacgtttgtttttgact |
2930887 |
T |
|
| Q |
198 |
gcaattgatgcttattctgttgtatttgttga |
229 |
Q |
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|||||||||| |||||||||| |||||||||| |
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| T |
2930888 |
gcaattgatgtttattctgttctatttgttga |
2930919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 307
Target Start/End: Original strand, 24567047 - 24567088
Alignment:
| Q |
266 |
tgcattacctatttagtatgggttttaatgaataagtggagt |
307 |
Q |
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|||||| ||||||||||||| ||| ||||||||||||||||| |
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| T |
24567047 |
tgcattgcctatttagtatgagttgtaatgaataagtggagt |
24567088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 403 - 431
Target Start/End: Original strand, 24555485 - 24555513
Alignment:
| Q |
403 |
gttgatcttgcatatttaattaagacttt |
431 |
Q |
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| T |
24555485 |
gttgatcttgcatatttaattaagacttt |
24555513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 504 - 557
Target Start/End: Complemental strand, 7998982 - 7998929
Alignment:
| Q |
504 |
ctatatgtggcgagataattcctcgcgaatcctcacgaatgaccatacagcttg |
557 |
Q |
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|||||||| |||||| |||||||| ||||||||||||||||| |||| ||||| |
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| T |
7998982 |
ctatatgtcgcgagaatattcctcgtgaatcctcacgaatgacaatacggcttg |
7998929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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